CcUC09G183330 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC09G183330
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description40S ribosomal protein S23
LocationCicolChr09: 34682836 .. 34686633 (-)
RNA-Seq ExpressionCcUC09G183330
SyntenyCcUC09G183330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATAAATTTTGGGATGTGTTTTAGATAATTTTTATCAAAAAATTAAAATAAAAATGAATTTTTTGAAAAATATTTTTTCTCAAGTTAATCTAAATGGGCCCTAGATGAAGGGGTAAATTACATCATTACAAAGTATAATTACATATTTAGACTTAGGGATATTGCTAAATTGCTGATAGTTAATCTTGAACTCGAAGGGTAATTACGTAATTATGTAGACAAAAGAGCTCAATTCACCAGTATGCGGTATATATATAATATCCGTCCCGCAATTCCATTGCGATTAGGGTTTGAGTTACCGCCAATCACAGTCAGTCTCCACACTCTGCTTTCGAATTTGGGCGTTTCTTGAAGAAGTTGCAGCATCTTCCTTAATCCGCCATCATGGGGTATGCATTTCTCTCTTCTCTGCATCGTCTTTTCTTTCATGGCGTTTTTATCTTCTTCATCTTCATCCAATTATGTTCTCTCTCTCTCAAAGTTGTTCATATTGTTCGTTGAAATTTTATGAACAAACAAACGGAAGTGGAGCTACTTTAAACAAGTGTTATTTCGTTCAGATCCTTGATTTTAAACTGGCTGCTTGTTTAGGATATTAAACTGGAAATTGTAAATCAGGAGAATGGTATTTCGAGGACTATTTTTTTAACTAAAAGATACAATCGATTGTTGAGCCCTTAGTTGAATATCTCTTGTCGAGCTTAATGTCTTGGTTTAAAAGATGTACTGATACTTTGTAGTTGGTTTATCGATTAACCGATAGGTTTGGAGTTATGGATAATCTGTTTTTTTCTGATTCCTTCGTTGCATGTGCATATGGTTGGACGAATTTATTCATATAATATCGGTGGAAACAGCTTTCGAAGTTCATATTCTAAGCTTAAATACTGTTGTTGATAGTCTCTCTGCCAAATTTCGAGAATTTATTTTGTTCCCCCCATTTCGATCAAGTTCTGATTCAGTTTTATGGTGCTGATTGCATACAATTTTCACATGCTAATGTCATTAAGGATGAAGCATTGTCAATATGCTACTTTTTTTTAATTTCCAACTTTTCTTAATTTTCAGTTTATTTTCAATTTAAAACTTCCATTTTCAAAGAAATTGAATTTGAAAAAACCACAAAAAATCTATTTTTTATGTTTAACCTAATTCAAGCTTTTTCTATTAAACTTTTACATCATTTCACCTCAAAATATTTTTGAATTCTATGTTATATTGTAATTAATTTTCAATTATTTTTTTAAAAAAATTGTTCTCGCATCGACAGTTGTACATCTAAATGTTATCTTACTTTATTGAAATGATGAGTAAAAATAGTCAATTTAGTCTAATTAAACCTCAATCTAAGTTTCATTAACTAATTGTAACAATTTTCATTAATTTTCATAAAGTTTCTCGAAATTTCCATCAATATTTCCAAAAGATTAGGACCTATTTCCATGGACATTGATATTTCGAACCTTGTTTGAGTTTTGTTGACACCAAAATGTTGTAGGGTTAGAGGGTTGTCCCATAAGATTAGTCAAGGTGCGCGTAAGCTGCCTTGGATACTCATGAATATAAAAAACGAATTTTGAACATTGTTTACAACCTCCATACCTAATTTCTTGGGGGAGAGCTCTTGAGCTTAGATTTCTCATACTCAATCTCAATATGTAGATGCTGTGCTTCACTTTGGCTGGGTAGCCTTTCTTTCTCCGATTATCTATTTTGTTGTGAATTATATTTGGATAGTAAGAGCGGAAATACCTTTCTAAGTTCATATACTAAGCTTGGATGATGGATATTATTGTTTGACAGTTTCTATATGTAATTCTTAGGAGGAGACATGAACATAGGTTCTTCTTCCTCGTTGAGTTTCATATGCATGCTTTATATCTTAATATGGAGATTACATCATTTTTCTTCACATATGCTGATAGTCTTTATCTCCATTCAAATTCTTGAAGGATACATTCTTAGCGTAGCTGATTTACTCTTACTTTGTTCTTTAATTGTACAAATATATTCAACTCATAATTAGTTAGGATTTTTCCCAAACCCTGCTATAGTAATGACTGAATTTATTTTGTTTGCATATCTTGCAGGAAGACTCGGGGAATGGGAGCTGGTCGTAAGTTGAAGTCGCACCGTAGAAGGCAGAGGTGGGCAGATAAGTCATATAAGAAATCTCATCTTGGTAATGAGTGGAAAAAGCCATTTGCAGGGTCATCTCATGCAAAAGGGATTGTGCTTGAAAAGATGTAAGGCTATTGATTCTTATGCTATTGTAGATTAATTTTGTTAATATTTATTAGTCTTGTGACAGTTGAATTTGCTAATACAGTGGAATTGAAGCCAAGCAGCCAAATTCTGCTATTAGAAAATGTGCTCGTGTTCAACTGATTAAAAATGGGAAGAAAATTGCTGCTTTTGTACCCAATGATGGCTGCCTAAATTATATTGAGGAAAATGTAAGTTGATCTAGTTTGCTTATGCTTTGAATTTTTAGTAACGTTTATGTTATTTTGTTGACCCAAATGTGTAAGGCTAGTTGTCCTACTTGATTTGTCAAGTGGGAATAAGCTGATCCAAACATATAAAAGCATAAATTAAACCAAAAATGGGTTTCTCACATACTGGCAGTTGTAAAACTGTTACTGTTTTATTATTTTTTATTATTTTATTATTTTTTACTTTTTCTTAAATACTTTTTTGGACTTTCATTTTTGTATAACTAGGTATTTGGACTTCCATTTTGTAGGAGTGTTTCTAAAATTACTAGTAAGCAAACTACTCGAGGTTTTCACAAATAGTTTCGAGGTTTCTCATATTTAAGTTTTGGGGATTGTATCAATTTAAACCCTGAACTTTCACAAGTGTCAATTTAAACTCCCAAACTAACAATTGTATCAAATAAAATCCTAAACTTACACAATTATATCAATTTAAACCTTTCATTATATTTTATTTGGATGCACATGAAAGTTTAGGATTTAACTTTATATACCCACCTTAAGGTTTTAATTGATACAATTAGTAGTTTAGGGTTTAAATCGATACAACCTCAAAGTTTAGAGTTTAAATTGATACAATTATTAATTTGGAATTTAAATTGATAGAGCCTCCAAAATTTAAAGGTATAAATTGACCATTCTCTCATATCGATCAAGGTTCTTCCCCAATGACTTCTATTTCGGTCCAACTTCTTTCTCAAAAATCTTAAATTTCTTTAGTTGAAGATGTTACAACTTTTCATTCTTTGTTGTGTTGGAAATTAAATTTGAATTGAAGAACTATTATACTATATTTAAAAAAGTTATTTTATTTTTGGAATTGTTGTGTGTTACAGGACGAGGTATTGATCGCGGGGTTCGGACGTAAGGGTCATGCTGTAGGAGATATTCCTGGTGTTAGGTTCAAGGTTGTTAAGGTTTCTGGTGTTTCTCTTCTGGCTCTCTTCAAAGAGAAGAAAGAAAAGCCAAGATCCTAGACATGTTTTTTTCTTACCTTTATATCAAATTTGATACAATCTCTTAATTTTTATTTCCAACGACAGCACTGCCTTGTTATTTTTCATTCACATGACATTATTGATTCTCCTTCCAACAGCTTCACTTATGGGTGTGTAACTGTCGGTTGGAGTTGGTTTTTTTTTTTTTTTTTTTTGACTAAACTGCCACCCTATGGTTGGTTTAATAAGTGTTCAAACCAATTTCAACAGTCAAGGAGTGAAAACCATCTTGAAGAAGTATGGTAGTAGTTGTAGTTACACCTTCAACTTTCAATTGTAAAAAATAAATTTTGAACTTTCG

mRNA sequence

AAATAAATTTTGGGATGTGTTTTAGATAATTTTTATCAAAAAATTAAAATAAAAATGAATTTTTTGAAAAATATTTTTTCTCAAGTTAATCTAAATGGGCCCTAGATGAAGGGGTAAATTACATCATTACAAAGTATAATTACATATTTAGACTTAGGGATATTGCTAAATTGCTGATAGTTAATCTTGAACTCGAAGGGTAATTACGTAATTATGTAGACAAAAGAGCTCAATTCACCAGTATGCGGTATATATATAATATCCGTCCCGCAATTCCATTGCGATTAGGGTTTGAGTTACCGCCAATCACAGTCAGTCTCCACACTCTGCTTTCGAATTTGGGCGTTTCTTGAAGAAGTTGCAGCATCTTCCTTAATCCGCCATCATGGGGTATGCATTTCTCTCTTCTCTGCATCGTCTTTTCTTTCATGGCGTTTTTATCTTCTTCATCTTCATCCAATTATGTTCTCTCTCTCTCAAAGTTGTTCATATTGTTCGTTGAAATTTTATGAACAAACAAACGGAAGTGGAGCTACTTTAAACAAGTGTTATTTCGTTCAGATCCTTGATTTTAAACTGGCTGCTTGTTTAGGATATTAAACTGGAAATTGTAAATCAGGAGAATGGTATTTCGAGGACTATTTTTTTAACTAAAAGATACAATCGATTGTTGAGCCCTTAGTTGAATATCTCTTGTCGAGCTTAATGTCTTGGTTTAAAAGATGTACTGATACTTTGTAGTTGGTTTATCGATTAACCGATAGGTTTGGAGTTATGGATAATCTGTTTTTTTCTGATTCCTTCGTTGCATGTGCATATGGTTGGACGAATTTATTCATATAATATCGGTGGAAACAGCTTTCGAAGTTCATATTCTAAGCTTAAATACTGTTGTTGATAGTCTCTCTGCCAAATTTCGAGAATTTATTTTGTTCCCCCCATTTCGATCAAGTTCTGATTCAGTTTTATGGTGCTGATTGCATACAATTTTCACATGCTAATGTCATTAAGGATGAAGCATTGTCAATATGCTACTTTTTTTTAATTTCCAACTTTTCTTAATTTTCAGTTTATTTTCAATTTAAAACTTCCATTTTCAAAGAAATTGAATTTGAAAAAACCACAAAAAATCTATTTTTTATGTTTAACCTAATTCAAGCTTTTTCTATTAAACTTTTACATCATTTCACCTCAAAATATTTTTGAATTCTATGTTATATTGTAATTAATTTTCAATTATTTTTTTAAAAAAATTGTTCTCGCATCGACAGTTGTACATCTAAATGTTATCTTACTTTATTGAAATGATGAGTAAAAATAGTCAATTTAGTCTAATTAAACCTCAATCTAAGTTTCATTAACTAATTGTAACAATTTTCATTAATTTTCATAAAGTTTCTCGAAATTTCCATCAATATTTCCAAAAGATTAGGACCTATTTCCATGGACATTGATATTTCGAACCTTGTTTGAGTTTTGTTGACACCAAAATGTTGTAGGGTTAGAGGGTTGTCCCATAAGATTAGTCAAGGTGCGCGTAAGCTGCCTTGGATACTCATGAATATAAAAAACGAATTTTGAACATTGTTTACAACCTCCATACCTAATTTCTTGGGGGAGAGCTCTTGAGCTTAGATTTCTCATACTCAATCTCAATATGTAGATGCTGTGCTTCACTTTGGCTGGGAAGACTCGGGGAATGGGAGCTGGTCGTAAGTTGAAGTCGCACCGTAGAAGGCAGAGGTGGGCAGATAAGTCATATAAGAAATCTCATCTTGGTAATGAGTGGAAAAAGCCATTTGCAGGGTCATCTCATGCAAAAGGGATTGTGCTTGAAAAGATTGGAATTGAAGCCAAGCAGCCAAATTCTGCTATTAGAAAATGTGCTCGTGTTCAACTGATTAAAAATGGGAAGAAAATTGCTGCTTTTGTACCCAATGATGGCTGCCTAAATTATATTGAGGAAAATGACGAGGTATTGATCGCGGGGTTCGGACGTAAGGGTCATGCTGTAGGAGATATTCCTGGTGTTAGGTTCAAGGTTGTTAAGGTTTCTGGTGTTTCTCTTCTGGCTCTCTTCAAAGAGAAGAAAGAAAAGCCAAGATCCTAGACATGTTTTTTTCTTACCTTTATATCAAATTTGATACAATCTCTTAATTTTTATTTCCAACGACAGCACTGCCTTGTTATTTTTCATTCACATGACATTATTGATTCTCCTTCCAACAGCTTCACTTATGGGTGTGTAACTGTCGGTTGGAGTTGGTTTTTTTTTTTTTTTTTTTTGACTAAACTGCCACCCTATGGTTGGTTTAATAAGTGTTCAAACCAATTTCAACAGTCAAGGAGTGAAAACCATCTTGAAGAAGTATGGTAGTAGTTGTAGTTACACCTTCAACTTTCAATTGTAAAAAATAAATTTTGAACTTTCG

Coding sequence (CDS)

ATGCTGTGCTTCACTTTGGCTGGGAAGACTCGGGGAATGGGAGCTGGTCGTAAGTTGAAGTCGCACCGTAGAAGGCAGAGGTGGGCAGATAAGTCATATAAGAAATCTCATCTTGGTAATGAGTGGAAAAAGCCATTTGCAGGGTCATCTCATGCAAAAGGGATTGTGCTTGAAAAGATTGGAATTGAAGCCAAGCAGCCAAATTCTGCTATTAGAAAATGTGCTCGTGTTCAACTGATTAAAAATGGGAAGAAAATTGCTGCTTTTGTACCCAATGATGGCTGCCTAAATTATATTGAGGAAAATGACGAGGTATTGATCGCGGGGTTCGGACGTAAGGGTCATGCTGTAGGAGATATTCCTGGTGTTAGGTTCAAGGTTGTTAAGGTTTCTGGTGTTTCTCTTCTGGCTCTCTTCAAAGAGAAGAAAGAAAAGCCAAGATCCTAG

Protein sequence

MLCFTLAGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Homology
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BLAST of CcUC09G183330 vs. NCBI nr
Match: OVA09919.1 (Ribosomal protein S12/S23 [Macleaya cordata])

HSP 1 Score: 284.3 bits (726), Expect = 6.2e-73
Identity = 142/147 (96.60%), Postives = 143/147 (97.28%), Query Frame = 0 

Query: 2   LCFTLAGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIG 61
           L   + GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIG
Sbjct: 645 LLTVIMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIG 704

Query: 62  IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIP 121
           IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIP
Sbjct: 705 IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIP 764

Query: 122 GVRFKVVKVSGVSLLALFKEKKEKPRS 149
           GVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 765 GVRFKVVKVSGVSLLALFKEKKEKPRS 791

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BLAST of CcUC09G183330 vs. NCBI nr
Match: PIA25887.1 (hypothetical protein AQUCO_10500021v1, partial [Aquilegia coerulea])

HSP 1 Score: 283.9 bits (725), Expect = 8.1e-73
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 0 

Query: 5   TLAGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA 64
           ++ GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA
Sbjct: 39  SIMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA 98

Query: 65  KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR 124
           KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR
Sbjct: 99  KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR 158

Query: 125 FKVVKVSGVSLLALFKEKKEKPRS 149
           FKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 159 FKVVKVSGVSLLALFKEKKEKPRS 182

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BLAST of CcUC09G183330 vs. NCBI nr
Match: PHU06613.1 (40S ribosomal protein S23 [Capsicum chinense])

HSP 1 Score: 283.9 bits (725), Expect = 8.1e-73
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 0 

Query: 1   MLCFTLAGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKI 60
           M+  +  GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKI
Sbjct: 6   MMDLSGCGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKI 65

Query: 61  GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDI 120
           GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDI
Sbjct: 66  GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDI 125

Query: 121 PGVRFKVVKVSGVSLLALFKEKKEKPRS 149
           PGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 126 PGVRFKVVKVSGVSLLALFKEKKEKPRS 153

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BLAST of CcUC09G183330 vs. NCBI nr
Match: CDP06706.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 283.5 bits (724), Expect = 1.1e-72
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 6   LAGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAK 65
           + GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAK
Sbjct: 41  IMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAK 100

Query: 66  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 125
           QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF
Sbjct: 101 QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 160

Query: 126 KVVKVSGVSLLALFKEKKEKPRS 149
           KVVKVSGVSLLALFKEKKEKPRS
Sbjct: 161 KVVKVSGVSLLALFKEKKEKPRS 183

[Close]
BLAST of CcUC09G183330 vs. NCBI nr
Match: PIA38663.1 (hypothetical protein AQUCO_02700115v1, partial [Aquilegia coerulea])

HSP 1 Score: 283.5 bits (724), Expect = 1.1e-72
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 6   LAGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAK 65
           + GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAK
Sbjct: 34  IMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAK 93

Query: 66  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 125
           QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF
Sbjct: 94  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 153

Query: 126 KVVKVSGVSLLALFKEKKEKPRS 149
           KVVKVSGVSLLALFKEKKEKPRS
Sbjct: 154 KVVKVSGVSLLALFKEKKEKPRS 176

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BLAST of CcUC09G183330 vs. ExPASy Swiss-Prot
Match: P46297 (40S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 2.6e-74
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0 

Query: 8   GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 67
           GKTRGMGA RKLK+HRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP
Sbjct: 2   GKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 61

Query: 68  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 127
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 62  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 121

Query: 128 VKVSGVSLLALFKEKKEKPRS 149
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142

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BLAST of CcUC09G183330 vs. ExPASy Swiss-Prot
Match: Q9M5Z9 (40S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 2.2e-73
Identity = 138/141 (97.87%), Postives = 138/141 (97.87%), Query Frame = 0 

Query: 8   GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 67
           GKT GMGA RKLKSHRR QRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP
Sbjct: 2   GKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 61

Query: 68  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 127
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 62  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 121

Query: 128 VKVSGVSLLALFKEKKEKPRS 149
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of CcUC09G183330 vs. ExPASy Swiss-Prot
Match: P49201 (40S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2)

HSP 1 Score: 270.0 bits (689), Expect = 1.6e-71
Identity = 136/141 (96.45%), Postives = 136/141 (96.45%), Query Frame = 0 

Query: 8   GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 67
           GKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP
Sbjct: 2   GKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 61

Query: 68  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 127
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 62  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 121

Query: 128 VKVSGVSLLALFKEKKEKPRS 149
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of CcUC09G183330 vs. ExPASy Swiss-Prot
Match: Q9SF35 (40S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2)

HSP 1 Score: 261.2 bits (666), Expect = 7.3e-69
Identity = 133/141 (94.33%), Postives = 134/141 (95.04%), Query Frame = 0 

Query: 8   GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 67
           GKTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQP
Sbjct: 2   GKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQP 61

Query: 68  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 127
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 62  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 121

Query: 128 VKVSGVSLLALFKEKKEKPRS 149
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of CcUC09G183330 vs. ExPASy Swiss-Prot
Match: Q9GRJ3 (40S ribosomal protein S23 OS=Lumbricus rubellus OX=35632 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.5e-61
Identity = 115/142 (80.99%), Postives = 126/142 (88.73%), Query Frame = 0 

Query: 8   GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQ 67
           GK RG+   RKLK+HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAKQ
Sbjct: 2   GKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQ 61

Query: 68  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 127
           PNSAIRKC RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFK
Sbjct: 62  PNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 121

Query: 128 VVKVSGVSLLALFKEKKEKPRS 149
           VVKV+ VSLLAL+K+KKE+PRS
Sbjct: 122 VVKVASVSLLALYKQKKERPRS 143

[Close]
BLAST of CcUC09G183330 vs. ExPASy TrEMBL
Match: A0A200QHJ3 (Ribosomal protein S12/S23 OS=Macleaya cordata OX=56857 GN=BVC80_1751g75 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.0e-73
Identity = 142/147 (96.60%), Postives = 143/147 (97.28%), Query Frame = 0 

Query: 2   LCFTLAGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIG 61
           L   + GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIG
Sbjct: 645 LLTVIMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIG 704

Query: 62  IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIP 121
           IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIP
Sbjct: 705 IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIP 764

Query: 122 GVRFKVVKVSGVSLLALFKEKKEKPRS 149
           GVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 765 GVRFKVVKVSGVSLLALFKEKKEKPRS 791

[Close]
BLAST of CcUC09G183330 vs. ExPASy TrEMBL
Match: A0A2G5C510 (Uncharacterized protein (Fragment) OS=Aquilegia coerulea OX=218851 GN=AQUCO_10500021v1 PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 3.9e-73
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 0 

Query: 5   TLAGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA 64
           ++ GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA
Sbjct: 39  SIMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA 98

Query: 65  KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR 124
           KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR
Sbjct: 99  KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR 158

Query: 125 FKVVKVSGVSLLALFKEKKEKPRS 149
           FKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 159 FKVVKVSGVSLLALFKEKKEKPRS 182

[Close]
BLAST of CcUC09G183330 vs. ExPASy TrEMBL
Match: A0A2G3BJI2 (40S ribosomal protein S23 OS=Capsicum chinense OX=80379 GN=BC332_23102 PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 3.9e-73
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 0 

Query: 1   MLCFTLAGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKI 60
           M+  +  GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKI
Sbjct: 6   MMDLSGCGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKI 65

Query: 61  GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDI 120
           GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDI
Sbjct: 66  GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDI 125

Query: 121 PGVRFKVVKVSGVSLLALFKEKKEKPRS 149
           PGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 126 PGVRFKVVKVSGVSLLALFKEKKEKPRS 153

[Close]
BLAST of CcUC09G183330 vs. ExPASy TrEMBL
Match: A0A068UE32 (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00023642001 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.1e-73
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 6   LAGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAK 65
           + GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAK
Sbjct: 41  IMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAK 100

Query: 66  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 125
           QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF
Sbjct: 101 QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 160

Query: 126 KVVKVSGVSLLALFKEKKEKPRS 149
           KVVKVSGVSLLALFKEKKEKPRS
Sbjct: 161 KVVKVSGVSLLALFKEKKEKPRS 183

[Close]
BLAST of CcUC09G183330 vs. ExPASy TrEMBL
Match: A0A2G5D591 (Uncharacterized protein (Fragment) OS=Aquilegia coerulea OX=218851 GN=AQUCO_02700115v1 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.1e-73
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 6   LAGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAK 65
           + GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAK
Sbjct: 34  IMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAK 93

Query: 66  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 125
           QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF
Sbjct: 94  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 153

Query: 126 KVVKVSGVSLLALFKEKKEKPRS 149
           KVVKVSGVSLLALFKEKKEKPRS
Sbjct: 154 KVVKVSGVSLLALFKEKKEKPRS 176

[Close]
BLAST of CcUC09G183330 vs. TAIR 10
Match: AT5G02960.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 270.0 bits (689), Expect = 1.1e-72
Identity = 136/141 (96.45%), Postives = 136/141 (96.45%), Query Frame = 0 

Query: 8   GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 67
           GKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP
Sbjct: 2   GKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 61

Query: 68  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 127
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 62  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 121

Query: 128 VKVSGVSLLALFKEKKEKPRS 149
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of CcUC09G183330 vs. TAIR 10
Match: AT3G09680.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 261.2 bits (666), Expect = 5.2e-70
Identity = 133/141 (94.33%), Postives = 134/141 (95.04%), Query Frame = 0 

Query: 8   GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 67
           GKTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQP
Sbjct: 2   GKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQP 61

Query: 68  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 127
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 62  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 121

Query: 128 VKVSGVSLLALFKEKKEKPRS 149
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of CcUC09G183330 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 48.9 bits (115), Expect = 4.1e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0 

Query: 40  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 99
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 100 IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 130
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]
BLAST of CcUC09G183330 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 48.9 bits (115), Expect = 4.1e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0 

Query: 40  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 99
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 100 IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 130
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]
BLAST of CcUC09G183330 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 48.9 bits (115), Expect = 4.1e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0 

Query: 40  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 99
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 100 IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 130
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

The following BLAST results are available for this feature:
BLAST of CcUC09G183330 vs. NCBI nr
Match NameE-valueIdentityDescription
OVA09919.16.2e-7396.60Ribosomal protein S12/S23 [Macleaya cordata][more]
PIA25887.18.1e-7397.92hypothetical protein AQUCO_10500021v1, partial [Aquilegia coerulea][more]
PHU06613.18.1e-7395.9540S ribosomal protein S23 [Capsicum chinense][more]
CDP06706.11.1e-7298.60unnamed protein product [Coffea canephora][more]
PIA38663.11.1e-7298.60hypothetical protein AQUCO_02700115v1, partial [Aquilegia coerulea][more]
BLAST of CcUC09G183330 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P462972.6e-7498.5840S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1[more]
Q9M5Z92.2e-7397.8740S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1[more]
P492011.6e-7196.4540S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2[more]
Q9SF357.3e-6994.3340S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2[more]
Q9GRJ31.5e-6180.9940S ribosomal protein S23 OS=Lumbricus rubellus OX=35632 GN=RPS23 PE=2 SV=1[more]
BLAST of CcUC09G183330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A200QHJ33.0e-7396.60Ribosomal protein S12/S23 OS=Macleaya cordata OX=56857 GN=BVC80_1751g75 PE=3 SV=... [more]
A0A2G5C5103.9e-7397.92Uncharacterized protein (Fragment) OS=Aquilegia coerulea OX=218851 GN=AQUCO_1050... [more]
A0A2G3BJI23.9e-7395.9540S ribosomal protein S23 OS=Capsicum chinense OX=80379 GN=BC332_23102 PE=3 SV=1[more]
A0A068UE325.1e-7398.60Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00023642001 PE=3 ... [more]
A0A2G5D5915.1e-7398.60Uncharacterized protein (Fragment) OS=Aquilegia coerulea OX=218851 GN=AQUCO_0270... [more]
BLAST of CcUC09G183330 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G02960.11.1e-7296.45Ribosomal protein S12/S23 family protein [more]
AT3G09680.15.2e-7094.33Ribosomal protein S12/S23 family protein [more]
ATCG00065.14.1e-0636.26ribosomal protein S12A [more]
ATCG01230.14.1e-0636.26ribosomal protein S12B [more]
ATCG00905.14.1e-0636.26ribosomal protein S12C [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 37..147
e-value: 7.7E-50
score: 167.3
IPR006032Ribosomal protein S12/S23PIRSFPIRSF002133RPS12p_RPS12a_RPS23e_RPS12ocoord: 22..148
e-value: 5.1E-33
score: 111.2
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 4..148
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 65..72
IPR005680Ribosomal protein S23, eukaryotic/archaealTIGRFAMTIGR00982TIGR00982coord: 12..147
e-value: 5.9E-53
score: 176.3
IPR005680Ribosomal protein S23, eukaryotic/archaealCDDcd03367Ribosomal_S23coord: 32..145
e-value: 2.46837E-75
score: 217.907
NoneNo IPR availableGENE3D2.40.50.140coord: 31..148
e-value: 4.0E-47
score: 160.6
NoneNo IPR availablePANTHERPTHR11652:SF59BNACNNG03140D PROTEINcoord: 4..148
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 26..146

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC09G183330.1CcUC09G183330.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome