Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCGCCAATTGCTTCTCCTCGCTCTTCTCTTCGCCGCCGTCGTCGCCATTGTCTCCGCCGCCGAGGCTCCCACCGCCTCCCCTGCTTCCTCACCTAAGGCTGCTGACGTTGAAACCTCCGATGCCGAAACTCCCGCAGCTACTCCTTCAAAGTCTCCCGCCGCCCCCCCAATCGCCGCCACTCCCACCGCCGCCGGTGCTCCCAAAGGAGCTGCTTCTTCCCCCAAGGCTGAGGCTGGAGCGCCTGAGGCTGAAGCCCCTGCTGCCGGTGGCCCTGCTTCCGCCCCTGCCGGCGATGAGTCTTCTGCTGAGTCCCCCGCTGGAGCCCCCGAATCCGACGCTGACGTGTCATCTCCACCTTCCCCAACCGGACCTGCTGCCGGACCCGTGAGCGATGGGGAAGCTGCTGCTGATGCACCCACTGATTCACCGACTGATGCTCCGGCCAGTGGAGCTTCTTTCCTGAAAGTGTCGGTTGCCGCCGTTGCTGGGATTTCAGCCATTGCTGGATTCTTTGCCTTCTAA
mRNA sequence
ATGGCCCGCCAATTGCTTCTCCTCGCTCTTCTCTTCGCCGCCGTCGTCGCCATTGTCTCCGCCGCCGAGGCTCCCACCGCCTCCCCTGCTTCCTCACCTAAGGCTGCTGACGTTGAAACCTCCGATGCCGAAACTCCCGCAGCTACTCCTTCAAAGTCTCCCGCCGCCCCCCCAATCGCCGCCACTCCCACCGCCGCCGGTGCTCCCAAAGGAGCTGCTTCTTCCCCCAAGGCTGAGGCTGGAGCGCCTGAGGCTGAAGCCCCTGCTGCCGGTGGCCCTGCTTCCGCCCCTGCCGGCGATGAGTCTTCTGCTGAGTCCCCCGCTGGAGCCCCCGAATCCGACGCTGACGTGTCATCTCCACCTTCCCCAACCGGACCTGCTGCCGGACCCGTGAGCGATGGGGAAGCTGCTGCTGATGCACCCACTGATTCACCGACTGATGCTCCGGCCAGTGGAGCTTCTTTCCTGAAAGTGTCGGTTGCCGCCGTTGCTGGGATTTCAGCCATTGCTGGATTCTTTGCCTTCTAA
Coding sequence (CDS)
ATGGCCCGCCAATTGCTTCTCCTCGCTCTTCTCTTCGCCGCCGTCGTCGCCATTGTCTCCGCCGCCGAGGCTCCCACCGCCTCCCCTGCTTCCTCACCTAAGGCTGCTGACGTTGAAACCTCCGATGCCGAAACTCCCGCAGCTACTCCTTCAAAGTCTCCCGCCGCCCCCCCAATCGCCGCCACTCCCACCGCCGCCGGTGCTCCCAAAGGAGCTGCTTCTTCCCCCAAGGCTGAGGCTGGAGCGCCTGAGGCTGAAGCCCCTGCTGCCGGTGGCCCTGCTTCCGCCCCTGCCGGCGATGAGTCTTCTGCTGAGTCCCCCGCTGGAGCCCCCGAATCCGACGCTGACGTGTCATCTCCACCTTCCCCAACCGGACCTGCTGCCGGACCCGTGAGCGATGGGGAAGCTGCTGCTGATGCACCCACTGATTCACCGACTGATGCTCCGGCCAGTGGAGCTTCTTTCCTGAAAGTGTCGGTTGCCGCCGTTGCTGGGATTTCAGCCATTGCTGGATTCTTTGCCTTCTAA
Protein sequence
MARQLLLLALLFAAVVAIVSAAEAPTASPASSPKAADVETSDAETPAATPSKSPAAPPIAATPTAAGAPKGAASSPKAEAGAPEAEAPAAGGPASAPAGDESSAESPAGAPESDADVSSPPSPTGPAAGPVSDGEAAADAPTDSPTDAPASGASFLKVSVAAVAGISAIAGFFAF
Homology
BLAST of CcUC09G182390 vs. NCBI nr
Match:
XP_038889219.1 (classical arabinogalactan protein 11 [Benincasa hispida])
HSP 1 Score: 201.8 bits (512), Expect = 4.8e-48
Identity = 148/183 (80.87%), Postives = 156/183 (85.25%), Query Frame = 0
Query: 1 MARQLLLLALLFAAVVAIVSAAEAPTASPASSPKAADVETSDAE-TPAATPSKSPAA--- 60
MARQL+LLALLF AVV IVSAAEAPTASPASSP A D SDAE TPAA PSKSPAA
Sbjct: 1 MARQLVLLALLFTAVVGIVSAAEAPTASPASSPAADDHAVSDAEKTPAAAPSKSPAAATT 60
Query: 61 PPIAATPTAAGAPKGAASSPKAEAGAPEAEAPAAGGPASAPAGDESSAESPAGAPESDAD 120
PIAATP+AAGAP+GAASSP+A EAE+PAAGGPAS PAGDESS++SPAGAPESDAD
Sbjct: 61 APIAATPSAAGAPEGAASSPQA-----EAESPAAGGPASGPAGDESSSDSPAGAPESDAD 120
Query: 121 VSSPPSPTGPAA----GPVSDGEAAADAPTDSPTDAPASGASFLKVSVAAVAGISAIAGF 176
VSSPPSPTGPAA GP SDGEAAADAP DSPTDA ASG SFLKVSVAAVAGISA+AGF
Sbjct: 121 VSSPPSPTGPAAGPADGPASDGEAAADAPADSPTDA-ASGGSFLKVSVAAVAGISAVAGF 177
BLAST of CcUC09G182390 vs. NCBI nr
Match:
XP_008458926.1 (PREDICTED: skin secretory protein xP2 [Cucumis melo])
HSP 1 Score: 174.1 bits (440), Expect = 1.1e-39
Identity = 135/190 (71.05%), Postives = 151/190 (79.47%), Query Frame = 0
Query: 1 MARQLLLLALLF-AAVVAIVSAAEAPTA----SPASSPKAADVETS-DAETPAATPSKSP 60
MARQ +LLALLF AAV+ IVSAAEAP A SPASSPKAAD+E S D +TPAA PSK+P
Sbjct: 1 MARQFILLALLFSAAVIGIVSAAEAPAASPASSPASSPKAADLEPSDDGKTPAAAPSKAP 60
Query: 61 AA---PPIAATPTAAGAPKGAASSPKAEAGAPEAEAPAAGGPASAPAGDESS-----AES 120
AA PIA TP+AAGAPKGAAS+P A+ GAPEA++P AGGPAS+PAGDESS A +
Sbjct: 61 AAAADAPIAVTPSAAGAPKGAASAPAAKGGAPEADSPVAGGPASSPAGDESSSTVAPAGA 120
Query: 121 PAGAPESDADVSSPPSPTGPAAGPVSDGEAAADAPTDSPTDAPA-SGASFLKVSVAAVAG 176
PAGAP SDA+VSSPPSPTGPAAGP SD AAADAP DSP D+PA SG S +KVSVAAVAG
Sbjct: 121 PAGAPASDAEVSSPPSPTGPAAGPASD--AAADAPADSPADSPAPSGGSLVKVSVAAVAG 180
BLAST of CcUC09G182390 vs. NCBI nr
Match:
XP_031741751.1 (lysine-rich arabinogalactan protein 17 [Cucumis sativus])
HSP 1 Score: 172.6 bits (436), Expect = 3.1e-39
Identity = 135/195 (69.23%), Postives = 153/195 (78.46%), Query Frame = 0
Query: 1 MARQLLLLALLF-AAVVAIVSAAEA--------PTASPASSPKAADVETSD-AETPAATP 60
MARQ LLALLF AAVV IVSAAEA P +SPASSPKAADVE SD A+TPAA P
Sbjct: 1 MARQFALLALLFSAAVVGIVSAAEAPATSPASSPASSPASSPKAADVEPSDGAKTPAAAP 60
Query: 61 SKSPAA---PPIAATPTAAGAPKGAASSPKAEAGAPEAEAPAAGGPASAPAGDESSAE-S 120
SKSPAA PIAATP+AAGAPKGAAS+P A+AGAPEA+ P AGGPAS+PAGDESS+ +
Sbjct: 61 SKSPAAAADAPIAATPSAAGAPKGAASAPSAKAGAPEADTPVAGGPASSPAGDESSSTVA 120
Query: 121 PAGAPESDADVSSPPSPTGPAAGPVSD------GEAAADAPTDSPTDAPASGASFLKVSV 176
PAGAPE ADVSSPPSPTGPAAGP SD +++AD+P D+P+D+PA+G S +KVSV
Sbjct: 121 PAGAPE--ADVSSPPSPTGPAAGPTSDAVADAPADSSADSPADTPSDSPANGGSLVKVSV 180
BLAST of CcUC09G182390 vs. NCBI nr
Match:
TYK09358.1 (skin secretory protein xP2 [Cucumis melo var. makuwa])
HSP 1 Score: 142.1 bits (357), Expect = 4.5e-30
Identity = 106/152 (69.74%), Postives = 121/152 (79.61%), Query Frame = 0
Query: 34 KAADVETS-DAETPAATPSKSPAA---PPIAATPTAAGAPKGAASSPKAEAGAPEAEAPA 93
+AAD+E S D +TPAA PSK+PAA PIA TP+AAGAPKGAAS+P A+ GAPEA++P
Sbjct: 3 QAADLEPSDDGKTPAAAPSKAPAAAVDAPIAVTPSAAGAPKGAASAPAAKGGAPEADSPV 62
Query: 94 AGGPASAPAGDESS-----AESPAGAPESDADVSSPPSPTGPAAGPVSDGEAAADAPTDS 153
AGGPAS+PAGDESS A +PAGAP SDA+VSSPPSPTGPAAGP SD AAADAP DS
Sbjct: 63 AGGPASSPAGDESSSTVAPAGAPAGAPASDAEVSSPPSPTGPAAGPASD--AAADAPADS 122
Query: 154 PTDAPA-SGASFLKVSVAAVAGISAIAGFFAF 176
P D+PA SG S +KVSVAAVAGIS + G F F
Sbjct: 123 PADSPAPSGGSLVKVSVAAVAGISGVVGLFVF 152
BLAST of CcUC09G182390 vs. NCBI nr
Match:
XP_022938389.1 (skin secretory protein xP2-like [Cucurbita moschata])
HSP 1 Score: 117.5 bits (293), Expect = 1.2e-22
Identity = 116/225 (51.56%), Postives = 132/225 (58.67%), Query Frame = 0
Query: 1 MARQLLLLALLFAAVVAIVSAAE------------------APTASP---------ASSP 60
MARQLLLLAL+FA VV IVSAA A A+P ASSP
Sbjct: 76 MARQLLLLALVFAVVVGIVSAASPKADDHKPSDAKSAENKTAAAAAPSPAHAHKGAASSP 135
Query: 61 KA------ADVETSDA------------ETPAATPSKSPAAPPI-AATPTA-AGAPKGAA 120
KA AD +A E A P AP A P A AGAPK A
Sbjct: 136 KADAGAPKADAGAPEADAGAPKADAGAPEADAGAPKADAGAPKADAGAPEADAGAPKADA 195
Query: 121 SSPKAEAGAPEAEAPA---AGGPASAPAGDESSAESPAGAPESDADVSSPPSPTGPAAGP 176
+P+AEAGAP+A +PA A GPAS PAG+E SA+SPAG+PESDAD SSPPSP+GPAAGP
Sbjct: 196 GAPEAEAGAPKASSPADGPASGPASGPAGNEGSADSPAGSPESDADASSPPSPSGPAAGP 255
BLAST of CcUC09G182390 vs. ExPASy TrEMBL
Match:
A0A1S3CA92 (skin secretory protein xP2 OS=Cucumis melo OX=3656 GN=LOC103498187 PE=4 SV=1)
HSP 1 Score: 174.1 bits (440), Expect = 5.1e-40
Identity = 135/190 (71.05%), Postives = 151/190 (79.47%), Query Frame = 0
Query: 1 MARQLLLLALLF-AAVVAIVSAAEAPTA----SPASSPKAADVETS-DAETPAATPSKSP 60
MARQ +LLALLF AAV+ IVSAAEAP A SPASSPKAAD+E S D +TPAA PSK+P
Sbjct: 1 MARQFILLALLFSAAVIGIVSAAEAPAASPASSPASSPKAADLEPSDDGKTPAAAPSKAP 60
Query: 61 AA---PPIAATPTAAGAPKGAASSPKAEAGAPEAEAPAAGGPASAPAGDESS-----AES 120
AA PIA TP+AAGAPKGAAS+P A+ GAPEA++P AGGPAS+PAGDESS A +
Sbjct: 61 AAAADAPIAVTPSAAGAPKGAASAPAAKGGAPEADSPVAGGPASSPAGDESSSTVAPAGA 120
Query: 121 PAGAPESDADVSSPPSPTGPAAGPVSDGEAAADAPTDSPTDAPA-SGASFLKVSVAAVAG 176
PAGAP SDA+VSSPPSPTGPAAGP SD AAADAP DSP D+PA SG S +KVSVAAVAG
Sbjct: 121 PAGAPASDAEVSSPPSPTGPAAGPASD--AAADAPADSPADSPAPSGGSLVKVSVAAVAG 180
BLAST of CcUC09G182390 vs. ExPASy TrEMBL
Match:
A0A0A0KUB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517830 PE=4 SV=1)
HSP 1 Score: 158.7 bits (400), Expect = 2.2e-35
Identity = 115/165 (69.70%), Postives = 134/165 (81.21%), Query Frame = 0
Query: 22 AEAPTASPASSPKAADVETSD-AETPAATPSKSPAA---PPIAATPTAAGAPKGAASSPK 81
A +P +SPASSPKAADVE SD A+TPAA PSKSPAA PIAATP+AAGAPKGAAS+P
Sbjct: 84 ASSPASSPASSPKAADVEPSDGAKTPAAAPSKSPAAAADAPIAATPSAAGAPKGAASAPS 143
Query: 82 AEAGAPEAEAPAAGGPASAPAGDESSAE-SPAGAPESDADVSSPPSPTGPAAGPVSD--- 141
A+AGAPEA+ P AGGPAS+PAGDESS+ +PAGAPE ADVSSPPSPTGPAAGP SD
Sbjct: 144 AKAGAPEADTPVAGGPASSPAGDESSSTVAPAGAPE--ADVSSPPSPTGPAAGPTSDAVA 203
Query: 142 ---GEAAADAPTDSPTDAPASGASFLKVSVAAVAGISAIAGFFAF 176
+++AD+P D+P+D+PA+G S +KVSVAAVAGIS I G F F
Sbjct: 204 DAPADSSADSPADTPSDSPANGGSLVKVSVAAVAGISGIVGLFVF 246
BLAST of CcUC09G182390 vs. ExPASy TrEMBL
Match:
A0A5D3CDS4 (Skin secretory protein xP2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold249G00550 PE=4 SV=1)
HSP 1 Score: 142.1 bits (357), Expect = 2.2e-30
Identity = 106/152 (69.74%), Postives = 121/152 (79.61%), Query Frame = 0
Query: 34 KAADVETS-DAETPAATPSKSPAA---PPIAATPTAAGAPKGAASSPKAEAGAPEAEAPA 93
+AAD+E S D +TPAA PSK+PAA PIA TP+AAGAPKGAAS+P A+ GAPEA++P
Sbjct: 3 QAADLEPSDDGKTPAAAPSKAPAAAVDAPIAVTPSAAGAPKGAASAPAAKGGAPEADSPV 62
Query: 94 AGGPASAPAGDESS-----AESPAGAPESDADVSSPPSPTGPAAGPVSDGEAAADAPTDS 153
AGGPAS+PAGDESS A +PAGAP SDA+VSSPPSPTGPAAGP SD AAADAP DS
Sbjct: 63 AGGPASSPAGDESSSTVAPAGAPAGAPASDAEVSSPPSPTGPAAGPASD--AAADAPADS 122
Query: 154 PTDAPA-SGASFLKVSVAAVAGISAIAGFFAF 176
P D+PA SG S +KVSVAAVAGIS + G F F
Sbjct: 123 PADSPAPSGGSLVKVSVAAVAGISGVVGLFVF 152
BLAST of CcUC09G182390 vs. ExPASy TrEMBL
Match:
A0A6J1FDY2 (skin secretory protein xP2-like OS=Cucurbita moschata OX=3662 GN=LOC111444655 PE=4 SV=1)
HSP 1 Score: 117.5 bits (293), Expect = 5.7e-23
Identity = 116/225 (51.56%), Postives = 132/225 (58.67%), Query Frame = 0
Query: 1 MARQLLLLALLFAAVVAIVSAAE------------------APTASP---------ASSP 60
MARQLLLLAL+FA VV IVSAA A A+P ASSP
Sbjct: 76 MARQLLLLALVFAVVVGIVSAASPKADDHKPSDAKSAENKTAAAAAPSPAHAHKGAASSP 135
Query: 61 KA------ADVETSDA------------ETPAATPSKSPAAPPI-AATPTA-AGAPKGAA 120
KA AD +A E A P AP A P A AGAPK A
Sbjct: 136 KADAGAPKADAGAPEADAGAPKADAGAPEADAGAPKADAGAPKADAGAPEADAGAPKADA 195
Query: 121 SSPKAEAGAPEAEAPA---AGGPASAPAGDESSAESPAGAPESDADVSSPPSPTGPAAGP 176
+P+AEAGAP+A +PA A GPAS PAG+E SA+SPAG+PESDAD SSPPSP+GPAAGP
Sbjct: 196 GAPEAEAGAPKASSPADGPASGPASGPAGNEGSADSPAGSPESDADASSPPSPSGPAAGP 255
BLAST of CcUC09G182390 vs. ExPASy TrEMBL
Match:
A0A6J1BWF7 (brain acid soluble protein 1 OS=Momordica charantia OX=3673 GN=LOC111006138 PE=4 SV=1)
HSP 1 Score: 113.6 bits (283), Expect = 8.3e-22
Identity = 112/200 (56.00%), Postives = 137/200 (68.50%), Query Frame = 0
Query: 1 MARQLLLLALLFAAVVAIVSAAEAPTASPASSP--------KAADVETSDAETPAATPSK 60
MARQL++LALLFAAVV +VSAA+AP+ +PA++P K + S A PAA PSK
Sbjct: 1 MARQLVVLALLFAAVVGVVSAAKAPSTAPAAAPSKSNSTEAKDSPASKSPASAPAAAPSK 60
Query: 61 S-----PAA----PPIAATPTAAGAPKGAASSPKAEA-GAPEAEAPAAGGPASAPAGD-E 120
S PAA P +ATP AA APKGAASSP A+A +AE+ AG PAS+PA D
Sbjct: 61 SNSSSAPAAAESDAPSSATP-AADAPKGAASSPAADAPKGTKAESAPAGSPASSPAADGP 120
Query: 121 SSAESPAGAPESDADVSSPPSPTGPAAGPVSDGEAAADAPT------DSPTDAPASGASF 176
+S ESPA +P++ ADVSSPPSP+GPAA +A ADAP D+PTDAPASGASF
Sbjct: 121 ASDESPAASPDA-ADVSSPPSPSGPAADS-DAADADADAPAAGGPAGDAPTDAPASGASF 180
BLAST of CcUC09G182390 vs. TAIR 10
Match:
AT5G14380.1 (arabinogalactan protein 6 )
HSP 1 Score: 42.0 bits (97), Expect = 5.9e-04
Identity = 70/179 (39.11%), Postives = 96/179 (53.63%), Query Frame = 0
Query: 1 MARQLLLLALLFAAVVAIVSAAEAPTASPASSPKAADVETSDAETPAATPSKSPAA---P 60
MARQ ++L LL +A AA+AP+ASP SP +P A P+K+P A
Sbjct: 1 MARQFVVLVLL-TLTIATAFAADAPSASPKKSP-----------SPTAAPTKAPTATTKA 60
Query: 61 PIAATPTAAGAPKGAASSPKAEAGAPEAEAPAAGGPASAPAGDESSAESPAGAPESDADV 120
P A T A APK +++S +P+A +PAA GP D+ SA SP+ + E+ V
Sbjct: 61 PSAPTKAPAAAPKSSSAS------SPKASSPAAEGPVPE---DDYSASSPSDSAEAPT-V 120
Query: 121 SSPPSPTGPAAGPVSDGEAAADAPTDSPT-DAPASGASFLKVSVAAVAGISAIAGFFAF 176
SSPP+PT D +AAD P+D PT ++P SGA + + +V G A GFF F
Sbjct: 121 SSPPAPT-------PDSTSAADGPSDGPTAESPKSGA--VTTAKFSVVGTVATVGFFFF 148
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A1S3CA92 | 5.1e-40 | 71.05 | skin secretory protein xP2 OS=Cucumis melo OX=3656 GN=LOC103498187 PE=4 SV=1 | [more] |
| A0A0A0KUB8 | 2.2e-35 | 69.70 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517830 PE=4 SV=1 | [more] |
| A0A5D3CDS4 | 2.2e-30 | 69.74 | Skin secretory protein xP2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... | [more] |
| A0A6J1FDY2 | 5.7e-23 | 51.56 | skin secretory protein xP2-like OS=Cucurbita moschata OX=3662 GN=LOC111444655 PE... | [more] |
| A0A6J1BWF7 | 8.3e-22 | 56.00 | brain acid soluble protein 1 OS=Momordica charantia OX=3673 GN=LOC111006138 PE=4... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G14380.1 | 5.9e-04 | 39.11 | arabinogalactan protein 6 | [more] |
