CcUC09G177030 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC09G177030
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionPhotosystem II CP47 reaction center protein
LocationCicolChr09: 20261252 .. 20266156 (-)
RNA-Seq ExpressionCcUC09G177030
SyntenyCcUC09G177030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCGATACGAAGCTTTTGTAGATGTGTTTTTGGGTATTCCTTTAGCATTTCGTCCAAGAGAAAGAGTTCCTCTAATTCCTCGCTTTCCCCCCTTTCCTCCGTTTCTGAGGTTTCTTTCAGTTTCTTAGTAACAATGGGTGACGGTATTCTGCCTAAATAGTAGACACAGGTAATAAATAAGAGAATACTAAAGATTCGAGCCACAGAATTTCTCAATTCTGACACAAGGTACTTATTAGATCTAATAAGTACATTAGATCTAATAGAATTATTTTGCTGTATCCAGACTAATATCAATCCAACCCATTTCATGAATAAAATGTGACCAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGAAAGGGAGATGGTTCCATGTGCTCTGATTCATTCTTTTGATTCGAATCTCGGAGCACTACCAAAGTGTTTCAAAGAAGGGTTATCCTGACGTAGGTATGCTTCTGACCTAGATCAACTTAAGCGGCAGCTGCACGAGCCCTTCCTGCATGCCATAAATGACCTACGAATAGGAAGAATCCTAGAACAAAATCCGATATTCAAGCCTGGATCAATATTGAGGCTGACACGAACAGTAATAAAACTACCAAAACGGGGGTTAATAATTTTCAACTAATTGAAAAAATCGATAAGAAAGATTTTTTTATCTCACAATTAATCAAGATCAAGAAAGCAACCCATCCAACAATAAAAAACAAATCTTTTTTGATTGGATGAGAATGAATGAAGAAATACTAAGTCGTTCCACATCGAATCTCGAACTTTGGTTCTTTTCAGAATTTTTGATACTTTATAATGCATATAAGATTAATCCGTGGATCATACCAATAAAATCACTTCTTTTAAATTGGAATGGAAATGAAATTTTTAGTAAAAATCAAAAACTCATTGGAAAGAAAAAAGGTCGTTTGCTTTCTGTTCATATAATGCATACAGCTCTAGTTGCTGGTTGGGCCGGTTCAATGGCCCTATACGAATTAGCAGTTTTTGATCCCTCTGATATAGCAATTTCTCTGGGATTTATCAGTCTAAGCAGGAGACAATATACTTTGATGTTATTGATCATTCTTTTATTTAAGGAATCATCCCATCTCAATTGAAAACGCAAATATCTTTTTAGGAAGAAATCAAGCTCCGCTTCCGTGTTTTTCTTGTATTGCTTTTTATTTATACGTTTTTTCACATCTGCTCCAGCAGAATCGTCTTGAAGATATTTTTTGTGGTTTGAGAGAACTGAGTCAAGATCCTCTTTGGCCACGGATTCCTTTTCTCCTTTATTTCCATTTTCTAATTCAAGAGTTTTTTCCTTCGCTGATATAAAAAGAGATCCTTTTTTCTTTCCAATGAGTTTTTGATTTTTACTAAAAATTTCATTTCCATTCCAATTTAAAAGAAGTGATTTTATTGGTATTATCCACGGATTAATCTTATATGCATTATAAAGTATCAAAAATTCTGGAAAGAACCAAAGTTCGAGATTCGATATGGAATGACTTAGTATTTCTTCAATCCTAACCGGATGATTATGAATTACTTCTATATTCGATATTAATAATTAATAGGATTAATAGTAATAGAAAATATGATATTAACCCCCGGTATAAAGTCCATCTTGTTGCTATAGAAATGAACAAGAAGAAATAAGTTTTCGCTAATGTAATAAAGGTACTAATTATTATTCCAAAGCGTTTTCTTGACTTTTTGGGCTATATTTCAAGTGTGCGATTAAATTTTTCAGTGGTATGGAGTCAAATGTTAGAAAATTCATTTCTAATAGATAATGCTACGAAGAAACTCAATACACTAGTTCCTATTATTACTCTGCTTGGATCATTGGCTAAAGCGAAATTTTGTAACGTGTTCGAGCATCCCATTAGTAAGCCGACCTGGATCGATTCGTCGGATTTTGATATTATTGATCGATTTGTATAGGAACTTCTGTACCAGAAACAATGGTATCTCCAATTATAGCCTCTCTGGGATGTAAAATATATCTTTTCTCACCATCCCATTTTCGAACACCTCATAGTATTTTCACGGCCTTCGAGTCTATCATTTCTGTATGATTTCTACTGTCCCTTCTTTCTAATGGGTTTCGAATATAAAAATCATTTTTTGGTTGATCCATAACCTGACCTAGATCAATATTATGAACTCAATACGGTAAATGAAAGTATCGTTCTCGTCTATATTTGAATTTTTCATTTTTAGGACTTATATTGCATTTTAATGTGTCTCACAATTCGAAAGAATTAGGCGAGGGTCGTTTCATTTTTGTATCGAGAATGAAGAGGTTCAAGAGATAAGAGAATTAAGGATACCCACCAAAAAGACTAATCCAATCCATAATGATGTACCGGAAGTGGACTCTAGAAGTACTACTAATTGAAAAATCAAACTGTATTGTTTTTGGTTTATTTTATCTTTCTGCAAATTTTTTTTTTGAACATCGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCGGAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCGACATTCTCGCTTCCGCTTCGTCCACCACTGCTCGCGCAGGTGCTTCCCTTTAAGGCGGAACACTCCCCTACCGATGCATTTTTACATCCCACAGCTTCGGATCTTGTATTTCATAAAAATTGGGGGCAATATAATCCTTTAAGATCAAACAATTTGCACCTACTCGAAATTTCCGGGGGCATGTGAAAAACAATAATAGATCTCGTCGTTAATAATTAATATTATGAAAAAAAAAAGTGAATATAGATACCTACCGTTCATTACTAAGAGGTAAACCCTATGATAAAGAAGATAAAAAAGAATCGATATACGAGGGAAGTATACGCTTTAGGTCAACATATATGTATGTCCCCTCACAAAGCGCGAAGAGTAATTGATCAGATTCGTGGACGGATGAGTAATCATTAGTTATGTATCAATTTTGATTTATTTAGGTAAGGTATCCATTTTGGGATTGTTTTCTTATATCATTAGGGAAACCGAATTTTCAATTTCAATCCAACAATCATTTATGAATTCACAGTCAATAGTTAAAGTTAACGGTTCCCATCGCCCCAATAAACCAAAAAGTTTTTGTTTATTTTTGATTTTATTAGATATTTTATATATTATATATATAATATATAAATATAGAAGATCAAATAGTAAACTGAAACTCTGTATTAAAAATTTAATGAGACATTGAAACAATGACATTAGTTAATTAAGTTAAAACCTTCTTGTTTAATTCTATGAACCCTTAATTTCTTTTCTCGAAATCATTATTACTATGATATAATATATCCCGCCGAATATATAATGAAATTGGTTTGCAAAATCCTATAAAATAAAACTATTGTTCAATAAAGAAAATTTACACCTTAAATTATTATTGAAATAAATGAAATCTGATAAGATTTTTATTGGAAACGCTCAAGAATTGGATCCTCATTATCTAAACAAACCCAAAATATACCATTGGTAAGTGATTCCGTAATTAAACCTTAAGAACTCTTTTTTTGTTCTTTCATTCCAGATGAAACATCTTTCAAAGTATCAATTAATGAAGGGGGAGTGGTATTAGAAACCTACCTCTTCTCTTTTTTTTTTTACAAATAGGGAACTTCTGTGTATAATTCGAATATCATAAAGATTACCATATATAACACAAAATATACCATTGGTAAGTGATTCAATAATTAAACCTTCAGAACTCCTTTTTTGTTCTTTCATTCCAGATGAAACATCTTTCAAAGTATCAATTAATGAAAGGGGAGTGGTATTAGAAACCTACCTCTTCTTTTTTTTTTTTTTTTACAAATAGGGAAGTTCTGTGTATAATTCGAATATCATAAAGATTACTATATATAACAGAAAATTTCACTACTTATTTACGTGGGTGCTATAAATGTTTTAAGCATATTTGCTGTGATGTTCATGAAGGGTTCAGAATATTCCAACGATTTTAATCTTTGGACCGTTGGGAATCCTTAGTTAGAATGGGATTCCAACTCAGTACCTTTTGAGATTTTGAGAAGAGTTGCTCTTTGGAGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTTCCTTCTCCTTTCAGGGCCTACCCGAAAGAGAATCCAGTGTTTCTTGGTCGTGAATATCTGAATAGGACGAACCGCCCCGTGGTTTGCTTCGGAACAAAACAATTAGAATTAGGCTCGTTGAACTGGAATATTTGTGAATAAATGATTGTCTGATAATGAGCAAGGAATGTCCGTCTTTCTGCTAAACAGGATGTATTGAACTCATAATTCATTAGATACTTTTTATGAATGTCAACTAAGTATTATAAGTAAATTACTCCCGGTTGTTCAATCATTTGATAACCAGAGTCATTCTTTGATAAATGATCACTATGAGTCAGACTCAATAGAATTTGATCAATCCTTTTTTCTATTGTTAAGGTGGAGAACTGAACCAAGAATTCTCTTTCTTTATCATCAATCGAATCACTGTTCGAGACCCAGGATTCGATAAAATGAAATGGTTGAATAATTGAAAAATGAGATTATTCAGGAATACACATTGAATGCTAAGATTACGCATTGAGTTTCTGGTAGTAGATCCATAATCAAAAAAGTGTTTGTGATTGTTCCAGAAGAAATGAAACAAAAGATACGGTAGAGCTAGGAGAGTTATTGTATGAGGTCTACCCAATGCTAGATGCAGAGGCGCATAATAGATCGATA

mRNA sequence

TTCCGATACGAAGCTTTTGTAGATGTGTTTTTGGGTATTCCTTTAGCATTTCGTCCAAGAGAAAGAGTTCCTCTAATTCCTCGCTTTCCCCCCTTTCCTCCGTTTCTGAGTAAAAATCAAAAACTCATTGGAAAGAAAAAAGGTCGTTTGCTTTCTGTTCATATAATGCATACAGCTCTAGTTGCTGGTTGGGCCGGTTCAATGGCCCTATACGAATTAGCAGTTTTTGATCCCTCTGATATAGCAATTTCTCTGGGATTTATCAGTCTAAGCAGGAGACAATATACTTTGATGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCGACATTCTCGCTTCCGCTTCGTCCACCACTGCTCGCGCAGATGAAACATCTTTCAAAGTATCAATTAATGAAAGGGGAGTGGGAAGTTCTGTGTATAATTCGAATATCATAAAGATTACTATATATAACAGAAAATTTCACTACTTATTTACAAGAAATGAAACAAAAGATACGGTAGAGCTAGGAGAGTTATTGTATGAGGTCTACCCAATGCTAGATGCAGAGGCGCATAATAGATCGATA

Coding sequence (CDS)

TTCCGATACGAAGCTTTTGTAGATGTGTTTTTGGGTATTCCTTTAGCATTTCGTCCAAGAGAAAGAGTTCCTCTAATTCCTCGCTTTCCCCCCTTTCCTCCGTTTCTGAGTAAAAATCAAAAACTCATTGGAAAGAAAAAAGGTCGTTTGCTTTCTGTTCATATAATGCATACAGCTCTAGTTGCTGGTTGGGCCGGTTCAATGGCCCTATACGAATTAGCAGTTTTTGATCCCTCTGATATAGCAATTTCTCTGGGATTTATCAGTCTAAGCAGGAGACAATATACTTTGATGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCGACATTCTCGCTTCCGCTTCGTCCACCACTGCTCGCGCAGATGAAACATCTTTCAAAGTATCAATTAATGAAAGGGGAGTGGGAAGTTCTGTGTATAATTCGAATATCATAAAGATTACTATATATAACAGAAAATTTCACTACTTATTTACAAGAAATGAAACAAAAGATACGGTAGAGCTAGGAGAGTTATTGTATGAGGTCTACCCAATGCTAGATGCAGAGGCGCATAATAGATCGATA

Protein sequence

FRYEAFVDVFLGIPLAFRPRERVPLIPRFPPFPPFLSKNQKLIGKKKGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDIAISLGFISLSRRQYTLMFSGHWILTNVCVTQADILASASSTTARADETSFKVSINERGVGSSVYNSNIIKITIYNRKFHYLFTRNETKDTVELGELLYEVYPMLDAEAHNRSI
Homology
[Close]
BLAST of CcUC09G177030 vs. NCBI nr
Match: QIS91854.1 (photosystem II 47 kDa protein [Augusta austrocaledonica])

HSP 1 Score: 73.2 bits (178), Expect = 2.8e-09
Identity = 43/74 (58.11%), Postives = 46/74 (62.16%), Query Frame = 0 

Query: 48  GRLLSVHIMHTALVAGWAGSMALYELAVFDPSDIAI------SLGFISLSRRQYTLMFSG 107
           GRLLSVHIMHTALVAGWAGSMALYELAVFDPSD  +       +  I    R       G
Sbjct: 17  GRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWG 76

Query: 108 HWILTNVCVTQADI 116
            WI+T   VT A I
Sbjct: 77  GWIITGGTVTNAGI 90

[Close]
BLAST of CcUC09G177030 vs. NCBI nr
Match: QHF17046.1 (PsbB [Stahlianthus involucratus] >QWY25470.1 photosystem II CP47 chlorophyll apoprotein [Stahlianthus involucratus])

HSP 1 Score: 72.0 bits (175), Expect = 6.3e-09
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 48 GRLLSVHIMHTALVAGWAGSMALYELAVFDPSDIAI 84
          GRLLSVHIMHTALVAGWAGSMALYELAVFDPSD AI
Sbjct: 17 GRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPAI 52

[Close]
BLAST of CcUC09G177030 vs. NCBI nr
Match: QGA85733.1 (photosystem II CP47 chlorophyll apoprotein, partial [Newtonia hildebrandtii])

HSP 1 Score: 71.6 bits (174), Expect = 8.2e-09
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 48 GRLLSVHIMHTALVAGWAGSMALYELAVFDPSDIAI 84
          GRLLSVHIMHTALVAGWAGSMALYELAVFDPSD+ +
Sbjct: 17 GRLLSVHIMHTALVAGWAGSMALYELAVFDPSDLVL 52

[Close]
BLAST of CcUC09G177030 vs. NCBI nr
Match: KAG4171738.1 (hypothetical protein ERO13_A12G229100v2 [Gossypium hirsutum])

HSP 1 Score: 71.6 bits (174), Expect = 8.2e-09
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 48 GRLLSVHIMHTALVAGWAGSMALYELAVFDPSDIAI 84
          GRLLSVHIMHTALVAGWAGSMALYELAVFDPSD+ +
Sbjct: 17 GRLLSVHIMHTALVAGWAGSMALYELAVFDPSDLVL 52

[Close]
BLAST of CcUC09G177030 vs. NCBI nr
Match: YP_009553980.1 (PsbB [Kaempferia elegans] >QBA19282.1 PsbB [Kaempferia elegans])

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-08
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 48 GRLLSVHIMHTALVAGWAGSMALYELAVFDPSDIAI 84
          GRLLSVHIMHTALVAGWAGSMALYELAVFDPSD A+
Sbjct: 17 GRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPAL 52

[Close]
BLAST of CcUC09G177030 vs. ExPASy Swiss-Prot
Match: A0A361 (Photosystem II CP47 reaction center protein OS=Coffea arabica OX=13443 GN=psbB PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-11
Identity = 42/74 (56.76%), Postives = 45/74 (60.81%), Query Frame = 0 

Query: 48  GRLLSVHIMHTALVAGWAGSMALYELAVFDPSDIAI------SLGFISLSRRQYTLMFSG 107
           GRLLSVHIMHTALVAGWAGSMALYELAVFDPSD  +       +  I    R       G
Sbjct: 17  GRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWG 76

Query: 108 HWILTNVCVTQADI 116
            W +T   VT A I
Sbjct: 77  GWSITGGTVTNAGI 90

[Close]
BLAST of CcUC09G177030 vs. ExPASy Swiss-Prot
Match: A9LYC6 (Photosystem II CP47 reaction center protein OS=Acorus americanus OX=263995 GN=psbB PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.1e-11
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 48 GRLLSVHIMHTALVAGWAGSMALYELAVFDPSD 81
          GRLLSVHIMHTALVAGWAGSMALYELAVFDPSD
Sbjct: 17 GRLLSVHIMHTALVAGWAGSMALYELAVFDPSD 49

[Close]
BLAST of CcUC09G177030 vs. ExPASy Swiss-Prot
Match: Q3V508 (Photosystem II CP47 reaction center protein OS=Acorus calamus OX=4465 GN=psbB PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.1e-11
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 48 GRLLSVHIMHTALVAGWAGSMALYELAVFDPSD 81
          GRLLSVHIMHTALVAGWAGSMALYELAVFDPSD
Sbjct: 17 GRLLSVHIMHTALVAGWAGSMALYELAVFDPSD 49

[Close]
BLAST of CcUC09G177030 vs. ExPASy Swiss-Prot
Match: A4QJE1 (Photosystem II CP47 reaction center protein OS=Aethionema cordifolium OX=434059 GN=psbB PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.1e-11
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 48 GRLLSVHIMHTALVAGWAGSMALYELAVFDPSD 81
          GRLLSVHIMHTALVAGWAGSMALYELAVFDPSD
Sbjct: 17 GRLLSVHIMHTALVAGWAGSMALYELAVFDPSD 49

[Close]
BLAST of CcUC09G177030 vs. ExPASy Swiss-Prot
Match: A4QJM5 (Photosystem II CP47 reaction center protein OS=Aethionema grandiflorum OX=72657 GN=psbB PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.1e-11
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 48 GRLLSVHIMHTALVAGWAGSMALYELAVFDPSD 81
          GRLLSVHIMHTALVAGWAGSMALYELAVFDPSD
Sbjct: 17 GRLLSVHIMHTALVAGWAGSMALYELAVFDPSD 49

[Close]
BLAST of CcUC09G177030 vs. ExPASy TrEMBL
Match: A0A6H0DS41 (Photosystem II CP47 reaction center protein OS=Augusta austrocaledonica OX=440679 GN=psbB PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-09
Identity = 43/74 (58.11%), Postives = 46/74 (62.16%), Query Frame = 0 

Query: 48  GRLLSVHIMHTALVAGWAGSMALYELAVFDPSDIAI------SLGFISLSRRQYTLMFSG 107
           GRLLSVHIMHTALVAGWAGSMALYELAVFDPSD  +       +  I    R       G
Sbjct: 17  GRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWG 76

Query: 108 HWILTNVCVTQADI 116
            WI+T   VT A I
Sbjct: 77  GWIITGGTVTNAGI 90

[Close]
BLAST of CcUC09G177030 vs. ExPASy TrEMBL
Match: A0A6B9QKB8 (Photosystem II CP47 reaction center protein OS=Stahlianthus involucratus OX=97769 GN=psbB PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.1e-09
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 48 GRLLSVHIMHTALVAGWAGSMALYELAVFDPSDIAI 84
          GRLLSVHIMHTALVAGWAGSMALYELAVFDPSD AI
Sbjct: 17 GRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPAI 52

[Close]
BLAST of CcUC09G177030 vs. ExPASy TrEMBL
Match: A0A5Q0UW41 (Photosystem II CP47 reaction center protein (Fragment) OS=Newtonia hildebrandtii OX=148737 GN=psbB PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.0e-09
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 48 GRLLSVHIMHTALVAGWAGSMALYELAVFDPSDIAI 84
          GRLLSVHIMHTALVAGWAGSMALYELAVFDPSD+ +
Sbjct: 17 GRLLSVHIMHTALVAGWAGSMALYELAVFDPSDLVL 52

[Close]
BLAST of CcUC09G177030 vs. ExPASy TrEMBL
Match: A0A3G2Z3T0 (Photosystem II CP47 reaction center protein OS=Musa ornata OX=160690 GN=psbB PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.2e-09
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 48 GRLLSVHIMHTALVAGWAGSMALYELAVFDPSDIAI 84
          GRLLSVHIMHTALVAGWAGSMALYELAVFDPSD A+
Sbjct: 17 GRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPAL 52

[Close]
BLAST of CcUC09G177030 vs. ExPASy TrEMBL
Match: U6A5V8 (Photosystem II CP47 reaction center protein OS=Monocostus uniflorus OX=4634 GN=psbB PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.2e-09
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 48 GRLLSVHIMHTALVAGWAGSMALYELAVFDPSDIAI 84
          GRLLSVHIMHTALVAGWAGSMALYELAVFDPSD A+
Sbjct: 17 GRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPAL 52

[Close]
BLAST of CcUC09G177030 vs. TAIR 10
Match: ATCG00680.1 (photosystem II reaction center protein B )

HSP 1 Score: 68.9 bits (167), Expect = 5.0e-12
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 48 GRLLSVHIMHTALVAGWAGSMALYELAVFDPSD 81
          GRLL+VHIMHTALVAGWAGSMALYELAVFDPSD
Sbjct: 17 GRLLAVHIMHTALVAGWAGSMALYELAVFDPSD 49

The following BLAST results are available for this feature:
BLAST of CcUC09G177030 vs. NCBI nr
Match NameE-valueIdentityDescription
QIS91854.12.8e-0958.11photosystem II 47 kDa protein [Augusta austrocaledonica][more]
QHF17046.16.3e-0997.22PsbB [Stahlianthus involucratus] >QWY25470.1 photosystem II CP47 chlorophyll apo... [more]
QGA85733.18.2e-0991.67photosystem II CP47 chlorophyll apoprotein, partial [Newtonia hildebrandtii][more]
KAG4171738.18.2e-0991.67hypothetical protein ERO13_A12G229100v2 [Gossypium hirsutum][more]
YP_009553980.11.1e-0894.44PsbB [Kaempferia elegans] >QBA19282.1 PsbB [Kaempferia elegans][more]
BLAST of CcUC09G177030 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A0A3611.8e-1156.76Photosystem II CP47 reaction center protein OS=Coffea arabica OX=13443 GN=psbB P... [more]
A9LYC63.1e-11100.00Photosystem II CP47 reaction center protein OS=Acorus americanus OX=263995 GN=ps... [more]
Q3V5083.1e-11100.00Photosystem II CP47 reaction center protein OS=Acorus calamus OX=4465 GN=psbB PE... [more]
A4QJE13.1e-11100.00Photosystem II CP47 reaction center protein OS=Aethionema cordifolium OX=434059 ... [more]
A4QJM53.1e-11100.00Photosystem II CP47 reaction center protein OS=Aethionema grandiflorum OX=72657 ... [more]
BLAST of CcUC09G177030 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6H0DS411.4e-0958.11Photosystem II CP47 reaction center protein OS=Augusta austrocaledonica OX=44067... [more]
A0A6B9QKB83.1e-0997.22Photosystem II CP47 reaction center protein OS=Stahlianthus involucratus OX=9776... [more]
A0A5Q0UW414.0e-0991.67Photosystem II CP47 reaction center protein (Fragment) OS=Newtonia hildebrandtii... [more]
A0A3G2Z3T05.2e-0994.44Photosystem II CP47 reaction center protein OS=Musa ornata OX=160690 GN=psbB PE=... [more]
U6A5V85.2e-0994.44Photosystem II CP47 reaction center protein OS=Monocostus uniflorus OX=4634 GN=p... [more]
BLAST of CcUC09G177030 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00680.15.0e-1296.97photosystem II reaction center protein B [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000932Photosystem antenna protein-likePFAMPF00421PSIIcoord: 45..82
e-value: 1.5E-15
score: 56.9
IPR000932Photosystem antenna protein-likePANTHERPTHR33180PHOTOSYSTEM II CP43 REACTION CENTER PROTEINcoord: 45..84
NoneNo IPR availablePANTHERPTHR33180:SF14PHOTOSYSTEM II CP47 REACTION CENTER PROTEINcoord: 45..84
IPR036001Photosystem antenna protein-like superfamilySUPERFAMILY161077Photosystem II antenna protein-likecoord: 46..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC09G177030.1CcUC09G177030.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0009767 photosynthetic electron transport chain
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0016020 membrane
cellular_component GO:0009521 photosystem
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity