CcUC09G173740 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC09G173740
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUvrD-like Helicase, ATP-binding domain, P-loop containing nucleoside triphosphate hydrolase
LocationCicolChr09: 10245540 .. 10246296 (-)
RNA-Seq ExpressionCcUC09G173740
SyntenyCcUC09G173740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTAATTGGCACTTTTTGTAACTTATCTATTGAGCTATGTTTAGATCGATAAATTTTATACATTTAAACATTATTACTTCATTATAATTTTTGTCTAATATATGGTTTTATGACCACTTTTTCTTATTGATATGCCATATATAGATATTGTTTATGGATATTGGGGAACTCCACAACATTATTAAAGAGTGATTCTATTTGGGAAGAGTTGGCTTTGGATGCCATCAATCGTAGTTTTTGCTTCCAAGCGGATGAAGATAAGGATTTGGCTAATGCAATGGCTAGTTGGAAGGTAACAATTTTAGACCTTTTTGTTCATAATAATTAATCACACTACAAAAGCTTCTTTCTTTTTAAGAATGTTTGAGTTAGCTACAAGTGGATAGCTTTCTTCCCTAACTTTGATCAATTGCCTTGAAAAATGTTTTTGTTATCATTGTTTTGTAGATGGATACAAAAATATATATCAATGATTTAGCAGTTGGAAAATCGAGCAACTTGCAAAAGACGAATTCTTTTGAGCATGAAAATGAATTACTTAATATGGATGATGATGCTCTAGAAATGTTTGAAGGATCAATTACTTATCCAAGAGCGAAGAAGCTACTACTTACATTACCTTCGATCTCACAGTACTCGAGCCATGATGATAACTCGTATGAGGATGAAGAAGATGGAAATTAATATAGAATGTAGATCTACGTGTTTTCCAAATGAAGTTACAAGAAGAAACATATGGCATTAGAAATGAGG

mRNA sequence

ATGGTATATTGTTTATGGATATTGGGGAACTCCACAACATTATTAAAGAGTGATTCTATTTGGGAAGAGTTGGCTTTGGATGCCATCAATCGTAGTTTTTGCTTCCAAGCGGATGAAGATAAGGATTTGGCTAATGCAATGGCTAGTTGGAAGATGGATACAAAAATATATATCAATGATTTAGCAGTTGGAAAATCGAGCAACTTGCAAAAGACGAATTCTTTTGAGCATGAAAATGAATTACTTAATATGGATGATGATGCTCTAGAAATGTTTGAAGGATCAATTACTTATCCAAGAGCGAAGAAGCTACTACTTACATTACCTTCGATCTCACAGTACTCGAGCCATGATGATAACTCGTATGAGGATGAAGAAGATGGAAATTAATATAGAATGTAGATCTACGTGTTTTCCAAATGAAGTTACAAGAAGAAACATATGGCATTAGAAATGAGG

Coding sequence (CDS)

ATGGTATATTGTTTATGGATATTGGGGAACTCCACAACATTATTAAAGAGTGATTCTATTTGGGAAGAGTTGGCTTTGGATGCCATCAATCGTAGTTTTTGCTTCCAAGCGGATGAAGATAAGGATTTGGCTAATGCAATGGCTAGTTGGAAGATGGATACAAAAATATATATCAATGATTTAGCAGTTGGAAAATCGAGCAACTTGCAAAAGACGAATTCTTTTGAGCATGAAAATGAATTACTTAATATGGATGATGATGCTCTAGAAATGTTTGAAGGATCAATTACTTATCCAAGAGCGAAGAAGCTACTACTTACATTACCTTCGATCTCACAGTACTCGAGCCATGATGATAACTCGTATGAGGATGAAGAAGATGGAAATTAA

Protein sequence

MVYCLWILGNSTTLLKSDSIWEELALDAINRSFCFQADEDKDLANAMASWKMDTKIYINDLAVGKSSNLQKTNSFEHENELLNMDDDALEMFEGSITYPRAKKLLLTLPSISQYSSHDDNSYEDEEDGN
Homology
[Close]
BLAST of CcUC09G173740 vs. NCBI nr
Match: KAA0061250.1 (regulator of nonsense transcripts 1-like protein [Cucumis melo var. makuwa] >TYK09379.1 regulator of nonsense transcripts 1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 1.0e-23
Identity = 68/111 (61.26%), Postives = 76/111 (68.47%), Query Frame = 0 

Query: 3   YCLWILGNSTTLLKSDSIWEELALDAINRSFCFQADEDKDLANAMASWKMDTKIYINDLA 62
           YCLWILGN  TL  SDSIWE+L  DA NR   F A EDKDLAN M+SWKMD +  I+DL 
Sbjct: 349 YCLWILGNFDTLSNSDSIWEDLVFDAKNRGCFFNAKEDKDLANVMSSWKMDVEKSIDDLI 408

Query: 63  VGKSSN-LQKTNSFEHENELLNMDDDALEMFEGSITYPRAKKLLLTLPSIS 113
           VGK  N LQ T+   HENE     ++AL MF+G IT  RAKK LL LPSIS
Sbjct: 409 VGKWVNDLQITSLLTHENEPDMDMNNALTMFQGPITRSRAKKQLLILPSIS 459

[Close]
BLAST of CcUC09G173740 vs. NCBI nr
Match: XP_008461528.2 (PREDICTED: uncharacterized protein LOC103500100 [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 1.0e-23
Identity = 67/111 (60.36%), Postives = 76/111 (68.47%), Query Frame = 0 

Query: 3   YCLWILGNSTTLLKSDSIWEELALDAINRSFCFQADEDKDLANAMASWKMDTKIYINDLA 62
           YCLWILGN  TL  SDSIWE+L  DA NR   F A EDKDLAN M+SWKMD +  ++DL 
Sbjct: 784 YCLWILGNFDTLSNSDSIWEDLVFDAKNRGCFFNAKEDKDLANVMSSWKMDVEKIVDDLI 843

Query: 63  VGKSSN-LQKTNSFEHENELLNMDDDALEMFEGSITYPRAKKLLLTLPSIS 113
           VGK  N LQ T+   HENE     ++AL MF+G IT  RAKK LL LPSIS
Sbjct: 844 VGKWVNDLQITSLLTHENEPDMDMNNALTMFQGPITRSRAKKQLLILPSIS 894

[Close]
BLAST of CcUC09G173740 vs. NCBI nr
Match: XP_031745084.1 (uncharacterized protein LOC101214715 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 8.4e-18
Identity = 60/115 (52.17%), Postives = 71/115 (61.74%), Query Frame = 0 

Query: 3   YCLWILGNSTTLLKSDSIWEELALDAINRSFCFQADEDKDLANAMASWKMDTKIYINDLA 62
           YCLWILGN  TL KSDS+WE+L  DA NR   F A EDKDLAN M+S KMD +  I+DL 
Sbjct: 820 YCLWILGNFNTLSKSDSVWEDLVFDAKNRGCFFNAKEDKDLANVMSSCKMDIEESIDDLQ 879

Query: 63  VGKSSNLQKTNSFEHENELLNMDDDALEMFEGSITYPRAKKLLLTLPSISQYSSH 118
           +   +NL      +HENE    D D   ++EG IT   A+K  LTLPSI    SH
Sbjct: 880 I---TNLM----IKHENE---PDMDMKTVYEGPITRSWARKQQLTLPSIYNLESH 924

[Close]
BLAST of CcUC09G173740 vs. NCBI nr
Match: KGN44700.2 (hypothetical protein Csa_016709 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 8.4e-18
Identity = 60/115 (52.17%), Postives = 71/115 (61.74%), Query Frame = 0 

Query: 3   YCLWILGNSTTLLKSDSIWEELALDAINRSFCFQADEDKDLANAMASWKMDTKIYINDLA 62
           YCLWILGN  TL KSDS+WE+L  DA NR   F A EDKDLAN M+S KMD +  I+DL 
Sbjct: 804 YCLWILGNFNTLSKSDSVWEDLVFDAKNRGCFFNAKEDKDLANVMSSCKMDIEESIDDLQ 863

Query: 63  VGKSSNLQKTNSFEHENELLNMDDDALEMFEGSITYPRAKKLLLTLPSISQYSSH 118
           +   +NL      +HENE    D D   ++EG IT   A+K  LTLPSI    SH
Sbjct: 864 I---TNLM----IKHENE---PDMDMKTVYEGPITRSWARKQQLTLPSIYNLESH 908

[Close]
BLAST of CcUC09G173740 vs. NCBI nr
Match: KAG6592248.1 (hypothetical protein SDJN03_14594, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.0 bits (193), Expect = 3.4e-11
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 3   YCLWILGNSTTLLKSDSIWEELALDAINRSFCFQADEDKDLANAMASWKM 53
           YCLWILGN TTL  SDSIWEEL  DA NR   FQADEDKDLAN ++ WK+
Sbjct: 132 YCLWILGNFTTLSNSDSIWEELVFDAKNRGCFFQADEDKDLANVLSIWKI 181

[Close]
BLAST of CcUC09G173740 vs. ExPASy TrEMBL
Match: A0A5D3CGE7 (Regulator of nonsense transcripts 1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5463G00100 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 5.0e-24
Identity = 68/111 (61.26%), Postives = 76/111 (68.47%), Query Frame = 0 

Query: 3   YCLWILGNSTTLLKSDSIWEELALDAINRSFCFQADEDKDLANAMASWKMDTKIYINDLA 62
           YCLWILGN  TL  SDSIWE+L  DA NR   F A EDKDLAN M+SWKMD +  I+DL 
Sbjct: 349 YCLWILGNFDTLSNSDSIWEDLVFDAKNRGCFFNAKEDKDLANVMSSWKMDVEKSIDDLI 408

Query: 63  VGKSSN-LQKTNSFEHENELLNMDDDALEMFEGSITYPRAKKLLLTLPSIS 113
           VGK  N LQ T+   HENE     ++AL MF+G IT  RAKK LL LPSIS
Sbjct: 409 VGKWVNDLQITSLLTHENEPDMDMNNALTMFQGPITRSRAKKQLLILPSIS 459

[Close]
BLAST of CcUC09G173740 vs. ExPASy TrEMBL
Match: A0A1S3CEY4 (uncharacterized protein LOC103500100 OS=Cucumis melo OX=3656 GN=LOC103500100 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 5.0e-24
Identity = 67/111 (60.36%), Postives = 76/111 (68.47%), Query Frame = 0 

Query: 3   YCLWILGNSTTLLKSDSIWEELALDAINRSFCFQADEDKDLANAMASWKMDTKIYINDLA 62
           YCLWILGN  TL  SDSIWE+L  DA NR   F A EDKDLAN M+SWKMD +  ++DL 
Sbjct: 784 YCLWILGNFDTLSNSDSIWEDLVFDAKNRGCFFNAKEDKDLANVMSSWKMDVEKIVDDLI 843

Query: 63  VGKSSN-LQKTNSFEHENELLNMDDDALEMFEGSITYPRAKKLLLTLPSIS 113
           VGK  N LQ T+   HENE     ++AL MF+G IT  RAKK LL LPSIS
Sbjct: 844 VGKWVNDLQITSLLTHENEPDMDMNNALTMFQGPITRSRAKKQLLILPSIS 894

[Close]
BLAST of CcUC09G173740 vs. ExPASy TrEMBL
Match: A0A0A0K9F2 (AAA_12 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G291120 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.1e-18
Identity = 60/115 (52.17%), Postives = 71/115 (61.74%), Query Frame = 0 

Query: 3   YCLWILGNSTTLLKSDSIWEELALDAINRSFCFQADEDKDLANAMASWKMDTKIYINDLA 62
           YCLWILGN  TL KSDS+WE+L  DA NR   F A EDKDLAN M+S KMD +  I+DL 
Sbjct: 93  YCLWILGNFNTLSKSDSVWEDLVFDAKNRGCFFNAKEDKDLANVMSSCKMDIEESIDDLQ 152

Query: 63  VGKSSNLQKTNSFEHENELLNMDDDALEMFEGSITYPRAKKLLLTLPSISQYSSH 118
           +   +NL      +HENE    D D   ++EG IT   A+K  LTLPSI    SH
Sbjct: 153 I---TNLM----IKHENE---PDMDMKTVYEGPITRSWARKQQLTLPSIYNLESH 197

[Close]
BLAST of CcUC09G173740 vs. ExPASy TrEMBL
Match: A0A5N6LSC1 (UvrD-like helicase ATP-binding domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_37846 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.9e-09
Identity = 47/108 (43.52%), Postives = 60/108 (55.56%), Query Frame = 0 

Query: 3    YCLWILGNSTTLLKSDSIWEELALDAINRSFCFQADEDKDLANAMASWKMDTKIYINDL- 62
            +CLWILGN  TL  S+ +W+EL  DA NRS  F AD D+ L   +    +DTK  +++L 
Sbjct: 1907 HCLWILGNERTLSNSECVWKELVCDARNRSCLFDADVDECLRKTI----LDTKKALDELD 1966

Query: 63   -AVGKSSNLQKTNSFEHENELLNMDDDALEMFEGSITYPRAKKLLLTL 109
              V  SS L     F+HE   +   DD    F G +T PR KKLLL L
Sbjct: 1967 DLVNGSSVL-----FKHEKWKVLFSDDFRRSF-GKLTSPRLKKLLLNL 2004

[Close]
BLAST of CcUC09G173740 vs. ExPASy TrEMBL
Match: A0A5N6LSC8 (UvrD-like helicase ATP-binding domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_37848 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.2e-08
Identity = 46/108 (42.59%), Postives = 59/108 (54.63%), Query Frame = 0 

Query: 3   YCLWILGNSTTLLKSDSIWEELALDAINRSFCFQADEDKDLANAMASWKMDTKIYINDL- 62
           +CLWILGN  TL  S+ +W+EL  DA NRS  F AD D+ L   +    +DTK  +++L 
Sbjct: 818 HCLWILGNERTLSNSECVWKELVCDARNRSCLFDADVDECLRKTI----LDTKKALDELD 877

Query: 63  -AVGKSSNLQKTNSFEHENELLNMDDDALEMFEGSITYPRAKKLLLTL 109
             V  SS L     F+HE   +   DD    F G +  PR KKLLL L
Sbjct: 878 DLVNGSSVL-----FKHEKWKVLFSDDFRRSF-GKLASPRLKKLLLNL 915

[Close]
BLAST of CcUC09G173740 vs. TAIR 10
Match: AT1G65780.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 4.2e-07
Identity = 24/51 (47.06%), Postives = 31/51 (60.78%), Query Frame = 0 

Query: 3   YCLWILGNSTTLLKSDSIWEELALDAINRSFCFQADEDKDLANAMASWKMD 54
           +CLWILGN  TL+ S S+W  L  DA  R     A ED+ LA A+AS  ++
Sbjct: 807 FCLWILGNEATLMNSKSVWRNLIQDAKERGCFHSAGEDESLAQAIASTNIE 857

[Close]
BLAST of CcUC09G173740 vs. TAIR 10
Match: AT5G37160.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 2.7e-06
Identity = 22/51 (43.14%), Postives = 33/51 (64.71%), Query Frame = 0 

Query: 3   YCLWILGNSTTLLKSDSIWEELALDAINRSFCFQADEDKDLANAMASWKMD 54
           +CLW++GN TTL  S SIW EL  ++  R   + A +DK+L +AM+   +D
Sbjct: 802 HCLWVIGNGTTLALSGSIWAELISESRTRGCFYDAVDDKNLRDAMSDALLD 852

[Close]
BLAST of CcUC09G173740 vs. TAIR 10
Match: AT5G37030.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 47.4 bits (111), Expect = 1.0e-05
Identity = 20/45 (44.44%), Postives = 29/45 (64.44%), Query Frame = 0 

Query: 3   YCLWILGNSTTLLKSDSIWEELALDAINRSFCFQADEDKDLANAM 48
           +CLW++GN +TL +S SIW  L  D+  R   + A +DK L +AM
Sbjct: 589 HCLWVIGNESTLARSGSIWANLISDSKRRKCFYDAKDDKRLRDAM 633

[Close]
BLAST of CcUC09G173740 vs. TAIR 10
Match: AT1G65810.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 5.1e-05
Identity = 37/124 (29.84%), Postives = 60/124 (48.39%), Query Frame = 0 

Query: 3   YCLWILGNSTTLLKSDSIWEELALDAINRSFCFQADEDKDLANAMASWKMDTKIYINDLA 62
           YCLWILGN  TL  + S+W +L  DA  R+    A+ED+ LA  +      +   ++DL 
Sbjct: 792 YCLWILGNEATLTNNRSVWRQLVDDAKARNCFHNAEEDESLAQCIER----STTALDDL- 851

Query: 63  VGKSSNLQKTNSFEHENELLNMDDDALEMFEGSITYPRAKKLLLTLPSISQYSS-HDDNS 122
             K  N +K  SFE+    + +  + L+  E  +     K+++  L  +S     H +  
Sbjct: 852 -NKLQN-KKLISFENSIWKVWLSYEFLKSLETIVDSEINKRVMSFLEKLSNGKELHQEVE 908

Query: 123 YEDE 126
           +E E
Sbjct: 912 FESE 908

[Close]
BLAST of CcUC09G173740 vs. TAIR 10
Match: AT1G65810.2 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 5.1e-05
Identity = 37/124 (29.84%), Postives = 60/124 (48.39%), Query Frame = 0 

Query: 3   YCLWILGNSTTLLKSDSIWEELALDAINRSFCFQADEDKDLANAMASWKMDTKIYINDLA 62
           YCLWILGN  TL  + S+W +L  DA  R+    A+ED+ LA  +      +   ++DL 
Sbjct: 792 YCLWILGNEATLTNNRSVWRQLVDDAKARNCFHNAEEDESLAQCIER----STTALDDL- 851

Query: 63  VGKSSNLQKTNSFEHENELLNMDDDALEMFEGSITYPRAKKLLLTLPSISQYSS-HDDNS 122
             K  N +K  SFE+    + +  + L+  E  +     K+++  L  +S     H +  
Sbjct: 852 -NKLQN-KKLISFENSIWKVWLSYEFLKSLETIVDSEINKRVMSFLEKLSNGKELHQEVE 908

Query: 123 YEDE 126
           +E E
Sbjct: 912 FESE 908

The following BLAST results are available for this feature:
BLAST of CcUC09G173740 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0061250.11.0e-2361.26regulator of nonsense transcripts 1-like protein [Cucumis melo var. makuwa] >TYK... [more]
XP_008461528.21.0e-2360.36PREDICTED: uncharacterized protein LOC103500100 [Cucumis melo][more]
XP_031745084.18.4e-1852.17uncharacterized protein LOC101214715 [Cucumis sativus][more]
KGN44700.28.4e-1852.17hypothetical protein Csa_016709 [Cucumis sativus][more]
KAG6592248.13.4e-1172.00hypothetical protein SDJN03_14594, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CcUC09G173740 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC09G173740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CGE75.0e-2461.26Regulator of nonsense transcripts 1-like protein OS=Cucumis melo var. makuwa OX=... [more]
A0A1S3CEY45.0e-2460.36uncharacterized protein LOC103500100 OS=Cucumis melo OX=3656 GN=LOC103500100 PE=... [more]
A0A0A0K9F24.1e-1852.17AAA_12 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G291120 PE=4... [more]
A0A5N6LSC15.9e-0943.52UvrD-like helicase ATP-binding domain-containing protein OS=Mikania micrantha OX... [more]
A0A5N6LSC82.2e-0842.59UvrD-like helicase ATP-binding domain-containing protein OS=Mikania micrantha OX... [more]
BLAST of CcUC09G173740 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G65780.14.2e-0747.06P-loop containing nucleoside triphosphate hydrolases superfamily protein [more]
AT5G37160.12.7e-0643.14P-loop containing nucleoside triphosphate hydrolases superfamily protein [more]
AT5G37030.11.0e-0544.44P-loop containing nucleoside triphosphate hydrolases superfamily protein [more]
AT1G65810.15.1e-0529.84P-loop containing nucleoside triphosphate hydrolases superfamily protein [more]
AT1G65810.25.1e-0529.84P-loop containing nucleoside triphosphate hydrolases superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC09G173740.1CcUC09G173740.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
cellular_component GO:0005622 intracellular anatomical structure
cellular_component GO:0043226 organelle
molecular_function GO:0140657 ATP-dependent activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0097159 organic cyclic compound binding