CcUC08G160080 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC08G160080
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr08: 27940104 .. 27940409 (+)
RNA-Seq ExpressionCcUC08G160080
SyntenyCcUC08G160080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAAAAATTTCAGCGCCTCTCCTCCTCAATCTTTCTTACCCTCGAAGCAGATCGATCCGATGGATCTTCACGCCAAATCCGTAAATTGCTTTTTCGAAAAAAAAGTAACAAGCGGAATCGCTCTGACAATTATATTTGTTTTCCTGATAACACACAACTAACCAATACAATTATTGAATTCGGTCAAGATTTTCCGCGCTATTGTGCGCCGTATCTTGCTGCCGCCTTGCCGCCGCAGGCGATTTCAACAATGCAATCAAACAGAGAGCTAGGCCGCATCCGGCGGTTCCGACGACGGTGA

mRNA sequence

ATGGATGAAAAATTTCAGCGCCTCTCCTCCTCAATCTTTCTTACCCTCGAAGCAGATCGATCCGATGGATCTTCACGCCAAATCCGTAAATTGCTTTTTCGAAAAAAAAGTAACAAGCGGAATCGCTCTGACAATTATATTTGTTTTCCTGATAACACACAACTAACCAATACAATTATTGAATTCGGTCAAGATTTTCCGCGCTATTGTGCGCCGTATCTTGCTGCCGCCTTGCCGCCGCAGGCGATTTCAACAATGCAATCAAACAGAGAGCTAGGCCGCATCCGGCGGTTCCGACGACGGTGA

Coding sequence (CDS)

ATGGATGAAAAATTTCAGCGCCTCTCCTCCTCAATCTTTCTTACCCTCGAAGCAGATCGATCCGATGGATCTTCACGCCAAATCCGTAAATTGCTTTTTCGAAAAAAAAGTAACAAGCGGAATCGCTCTGACAATTATATTTGTTTTCCTGATAACACACAACTAACCAATACAATTATTGAATTCGGTCAAGATTTTCCGCGCTATTGTGCGCCGTATCTTGCTGCCGCCTTGCCGCCGCAGGCGATTTCAACAATGCAATCAAACAGAGAGCTAGGCCGCATCCGGCGGTTCCGACGACGGTGA

Protein sequence

MDEKFQRLSSSIFLTLEADRSDGSSRQIRKLLFRKKSNKRNRSDNYICFPDNTQLTNTIIEFGQDFPRYCAPYLAAALPPQAISTMQSNRELGRIRRFRRR
Homology
[Close]
BLAST of CcUC08G160080 vs. NCBI nr
Match: KAG6598381.1 (BRI1 kinase inhibitor 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.2 bits (147), Expect = 5.8e-06
Identity = 35/64 (54.69%), Postives = 36/64 (56.25%), Query Frame = 0 

Query: 17 EADRSDGSSRQIRKLLFRKKSNKRNRSDNYICFPDNTQLTNTIIEFGQDFPRYCAPYLAA 76
          + D SDGSSRQIRK                        LTN IIE GQDFPRYCAPYLAA
Sbjct: 17 QIDPSDGSSRQIRK------------------------LTNAIIESGQDFPRYCAPYLAA 56

Query: 77 ALPP 81
          ALPP
Sbjct: 77 ALPP 56

[Close]
BLAST of CcUC08G160080 vs. NCBI nr
Match: KAG6585652.1 (hypothetical protein SDJN03_18385, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 53.9 bits (128), Expect = 9.3e-04
Identity = 30/51 (58.82%), Postives = 35/51 (68.63%), Query Frame = 0 

Query: 17 EADRSDGSSRQIRKLLFRKK-SNKRNRSDNYICFPDNTQLTNTIIEFGQDF 67
          +ADRSDGSS QI K LF++  ++K   SDNY CF D TQLTN IIE    F
Sbjct: 6  QADRSDGSSHQIHKFLFQQTVTSKIVCSDNYTCFADKTQLTNRIIEIRSRF 56

The following BLAST results are available for this feature:
BLAST of CcUC08G160080 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6598381.15.8e-0654.69BRI1 kinase inhibitor 1, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG6585652.19.3e-0458.82hypothetical protein SDJN03_18385, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CcUC08G160080 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC08G160080 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC08G160080 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC08G160080.1CcUC08G160080.1mRNA