CcUC08G159300 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC08G159300
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	protein RADIALIS-like 4
Location	CicolChr08: 27419727 .. 27422273 (+)
RNA-Seq Expression	CcUC08G159300
Synteny	CcUC08G159300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTGGTCTCTTTCTTACCATATTTCTTCGGCTTTCTTTGTAGTATCTTCACCTACTTATTCTCCTGTGTATTGTAAGACGACCATATCTTCACCCTTCAAAACTTTCCATCCAAACTTCCTTTATATCATGGCATCAAGCTCTTTTAAATCTTCAGGCAGTTCTAGCTCCTCATGGACGCTTAAACAAAACAAAAAATTTGAGGACGCTCTGGTTTTATATCCCGAGGACACACCAGATCGGTGGCAAAAGGTGGCCAGGGCAGTGGGTGGAAAAACAGCTGAGGAAGTAAAAAGGCATTATGATATCCTATTGCAAGATCTCATGCATATAGAATCTGGAAAAGTTCCTCTTCCCAACTACAAGCCCATTGTTTCCAACGGTTCGGAGTATGGTGATGAGCAGAGGTAAACTCTTAAGCGTCTTCTTTATGTCATGTGTCTCTATTATCCTATACTTTCATCCTCGGAAAGTCATCAAGACCTCTGAGTATTTAGCTCATAAAGGAAAAAGACCTTCAAAATAACATGATTCTTACAAGTAACAGTAGGAAGCCACCTTACAAGAAAAGGTATTCATCTTTATTAGGAGAACCAACCTCCCATGTTTCTTCAATGGTACAATATTATCCAATTTTTGAATTTAAATCCTAAGGTTTTGCTTGTAGTTTCATCTAAAACCTCCTACCAATAGAGATAGTGTCGTTTATTTATATATCATGGACCTTCTCTTTCTAAATGGATGCTAGACTAGACGTATGTTTACTTCCCAACCATCCTCAAACTAAAATTTCCTATTTCCTTTTTTCCTTTTCATCATTTATGCATTTTGAAAGTCCGAATGACTACAAGGCTATATAAAAGGAAATAGCCATTCTCTAATGAATTTCTATACTCCTTACGTACCACGTTTTCCCTTTTCCTACTCAGTTAGCTACAACTTAAACCCAACACCGACAAACTCTGATAAAGAAGTCTTTTCTACAAGACATCATCCTATTCCCACTCATGCATTCCCACTTCCCCTTTCTAAGAAAAAGACCACGTGAAATCTAATCTCTCGTGCTTTAAATTACTTGCACATGGTCCTGTATTTCTGACTTCAGACATCTACGTATTTATTTATAAATCCCTTCTTTAACATTTGGATCTACTTTAGTATTTGGCTACGAAAGTACTAATTAAAGAACTGTTAAGTTAACATGGGTTGCGTTAATCAAACATCAGTGCCTCCTCGAACCATGGCAGGCTCATGAAAAATATCACTGCCTCCTTGCAGAATTAATCGTCCATATATTCACATTTAACTAATTTTTCTATCATTATCACTTTAAATTATTGCAGGCTCATGAAGAATCTAAAGCTCCAATAAGGCAAGGTATTATACCAACGATATAATAAGAGCTGTAGAAGCGTTGTTCTCGATAATTTCAAGAATATAGCTTGGTGTCAGTGTTTCTCTACCTTCCCGCTCTGTTTGTCCCTTCTAGCATATATTGCTAAAGTATTGTAACCTGTGAAGCGAACTAAACTATTGTAAGTTGTAACCTGTTTGTTCATGTACCCGATTTCTCTGCTTTTGTGTACTTCTATCATTACTGTTTCATTCGCTTTCCAATCATTAAAAAAAGAAGAGAAAAGAAAGGAATATCATGTAAAATATTTGCTTGCCTTTATTGTTTATCGCTACAAAAGATACTCCTATGCTACAGGCTAACCAATCTTATGTCTAATCAGTATAAAGTGGAAGGATCAGTTCAATTATTTACTCACCAGCATTTCATCAACTAAGTTATCAACAGAACATTAAGAGCAAGGATAATAAGTGAACAACCGAAAGATAGATAATGATCGAAGAGTCATACCGCACTTCTCTATAATTGTTAATGTAAAATTGAGACCGAGTGAGTAACTTCTTTAGTAAAACCGATGCAAGAAGATGACCGTCAAACCACTTCAAAATTCTGAGGTCAAAAAATAAACTATGAAATTTGAGAAAGACAGTGGAAGATTACTAACTACAGAGCGGAGCGATTACCAAAGCAATCACACTAAGATCTATTTCACTGACCTGTAGACGAGATTGCCGAATGTAAATCTAGATAACGGAAGATGAGTAACTTCTCTGGTAAAATCGATTCAAATGACGGATCAAACATTTCAATCCGGAGTTGAAAAACGAACCAAATTTGAGAGAAACATGTAAATCAACATAACCTTCGATGTCAACAGTAATCAAGAACAGAATCGACACGAAACTGCGATTTATGATACGGACCTGTAGATGGCGAAAACAAGATGAGAATGCAAGTATGTATGCCTGAAATCTGAACAACGTTGAACAAGTAGTGGACACGATAACAACAACGTTGAACAAGTAGTGGACACGATAACAACGAGAGATTGGAGGAAGAAGGTATTGAAAGGCACAGTAAGATTAAACCAGAAGGTGGAGATAGAAGAAGAGACGAGGATTGGCATTGGGATCGATTCTTCTCTCTTGGAAGAAGACGAATTAGCGGGAAAATTTGCGAAGTGTGACGCCCTG

mRNA sequence

CCTTGGTCTCTTTCTTACCATATTTCTTCGGCTTTCTTTGTAGTATCTTCACCTACTTATTCTCCTGTGTATTGTAAGACGACCATATCTTCACCCTTCAAAACTTTCCATCCAAACTTCCTTTATATCATGGCATCAAGCTCTTTTAAATCTTCAGGCAGTTCTAGCTCCTCATGGACGCTTAAACAAAACAAAAAATTTGAGGACGCTCTGGTTTTATATCCCGAGGACACACCAGATCGGTGGCAAAAGGTGGCCAGGGCAGTGGGTGGAAAAACAGCTGAGGAAGTAAAAAGGCATTATGATATCCTATTGCAAGATCTCATGCATATAGAATCTGGAAAAGTTCCTCTTCCCAACTACAAGCCCATTGTTTCCAACGGTTCGGAGTATGGTGATGAGCAGAGTGGACACGATAACAACAACGTTGAACAAGTAGTGGACACGATAACAACGAGAGATTGGAGGAAGAAGGTATTGAAAGGCACAGTAAGATTAAACCAGAAGGTGGAGATAGAAGAAGAGACGAGGATTGGCATTGGGATCGATTCTTCTCTCTTGGAAGAAGACGAATTAGCGGGAAAATTTGCGAAGTGTGACGCCCTG

Coding sequence (CDS)

ATGGCATCAAGCTCTTTTAAATCTTCAGGCAGTTCTAGCTCCTCATGGACGCTTAAACAAAACAAAAAATTTGAGGACGCTCTGGTTTTATATCCCGAGGACACACCAGATCGGTGGCAAAAGGTGGCCAGGGCAGTGGGTGGAAAAACAGCTGAGGAAGTAAAAAGGCATTATGATATCCTATTGCAAGATCTCATGCATATAGAATCTGGAAAAGTTCCTCTTCCCAACTACAAGCCCATTGTTTCCAACGGTTCGGAGTATGGTGATGAGCAGAGTGGACACGATAACAACAACGTTGAACAAGTAGTGGACACGATAACAACGAGAGATTGGAGGAAGAAGGTATTGAAAGGCACAGTAAGATTAAACCAGAAGGTGGAGATAGAAGAAGAGACGAGGATTGGCATTGGGATCGATTCTTCTCTCTTGGAAGAAGACGAATTAGCGGGAAAATTTGCGAAGTGTGACGCCCTG

Protein sequence

MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQSGHDNNNVEQVVDTITTRDWRKKVLKGTVRLNQKVEIEEETRIGIGIDSSLLEEDELAGKFAKCDAL

Homology

[Close]

BLAST of CcUC08G159300 vs. NCBI nr
Match: XP_038884277.1 (protein RADIALIS-like 4 [Benincasa hispida])

HSP 1 Score: 180.3 bits (456), Expect = 1.3e-41
Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQ 93
          LLQDLMHIESGKVPLPNYKPIVSNGS Y DEQ
Sbjct: 61 LLQDLMHIESGKVPLPNYKPIVSNGSVYADEQ 92

[Close]

BLAST of CcUC08G159300 vs. NCBI nr
Match: XP_008444724.1 (PREDICTED: protein RADIALIS-like 4 [Cucumis melo])

HSP 1 Score: 176.4 bits (446), Expect = 1.9e-40
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQ 93
          LLQDLMHIESGKVPLPNYKP+V NGS Y DEQ
Sbjct: 61 LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQ 92

[Close]

BLAST of CcUC08G159300 vs. NCBI nr
Match: KAA0065228.1 (protein RADIALIS-like 4 [Cucumis melo var. makuwa])

HSP 1 Score: 176.4 bits (446), Expect = 1.9e-40
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQ 93
          LLQDLMHIESGKVPLPNYKP+V NGS Y DEQ
Sbjct: 61 LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQ 92

[Close]

BLAST of CcUC08G159300 vs. NCBI nr
Match: XP_004152694.1 (protein RADIALIS-like 4 [Cucumis sativus] >KGN62607.1 hypothetical protein Csa_022103 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 1.6e-39
Identity = 86/92 (93.48%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDI
Sbjct: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60

Query: 61 LLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQ 93
          LLQDLMHIESGKVPLPNYKPI  NGS Y DEQ
Sbjct: 61 LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQ 92

[Close]

BLAST of CcUC08G159300 vs. NCBI nr
Match: XP_022961874.1 (protein RADIALIS-like 4 [Cucurbita moschata] >XP_022996692.1 protein RADIALIS-like 4 [Cucurbita maxima] >XP_023545905.1 protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.0 bits (432), Expect = 8.2e-39
Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MA+S FKSSGSSSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDI
Sbjct: 1  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61 LLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQ 93
          L+QDLMHIESGK+PLPNYKPIVSNG+ YGDEQ
Sbjct: 61 LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQ 92

[Close]

BLAST of CcUC08G159300 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.5e-24
Identity = 53/83 (63.86%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 8  SSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMH 67
          +S SS S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++
Sbjct: 4  NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLIN 63

Query: 68 IESGKVPLPNYKPIVSNGSEYGD 91
          IE+G+VPLPNYK   SN     D
Sbjct: 64 IETGRVPLPNYKTFESNSRSIND 86

[Close]

BLAST of CcUC08G159300 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.0e-23
Identity = 59/97 (60.82%), Postives = 70/97 (72.16%), Query Frame = 0


Query: 1  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASSS     SSSSSWT KQNK FE AL +Y +DTPDRWQ VA+AVG K+AEEVKRHYDI
Sbjct: 1  MASSSM----SSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDI 60

Query: 61 LLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQSGHDN 98
          L++DLM+IE   VPLP YK +     + G +  G D+
Sbjct: 61 LVEDLMNIEQDLVPLPKYKTV-----DVGSKSRGIDD 88

[Close]

BLAST of CcUC08G159300 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 9.4e-22
Identity = 51/79 (64.56%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 1  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASSS   S  SS SWT KQNK FE AL  Y +DTP+RWQ VA+ VGGKT EEVKRHY++
Sbjct: 1  MASSSM--SSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYEL 60

Query: 61 LLQDLMHIESGKVPLPNYK 80
          L+QD+  IE+G VP PNY+
Sbjct: 61 LVQDINSIENGHVPFPNYR 77

[Close]

BLAST of CcUC08G159300 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.6e-21
Identity = 51/86 (59.30%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 1  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MAS S  S G  S SWT+KQNK FE AL +Y +DTPDRW  VARAVGGKT EE KR YD+
Sbjct: 1  MASGSMSSYG--SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDL 60

Query: 61 LLQDLMHIESGKVPLPNYKPIVSNGS 87
          L++D+  IE+G VP P+YK    N +
Sbjct: 61 LVRDIESIENGHVPFPDYKTTTGNSN 84

[Close]

BLAST of CcUC08G159300 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.0e-21
Identity = 52/88 (59.09%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MAS+S     SSS+SWT K+NK FE AL  Y +DTPDRW  VARAVGGK+AEEV+RHY++
Sbjct: 1  MASNSM----SSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYEL 60

Query: 61 LLQDLMHIESGKVPLPNYKPIVSNGSEY 89
          L++D+  IESG+ P PNY+   SNG+ +
Sbjct: 61 LIRDVNDIESGRYPHPNYR---SNGNNH 81

[Close]

BLAST of CcUC08G159300 vs. ExPASy TrEMBL
Match: A0A5A7VC75 (Protein RADIALIS-like 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005670 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 9.4e-41
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQ 93
          LLQDLMHIESGKVPLPNYKP+V NGS Y DEQ
Sbjct: 61 LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQ 92

[Close]

BLAST of CcUC08G159300 vs. ExPASy TrEMBL
Match: A0A1S3BBS2 (protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487975 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 9.4e-41
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQ 93
          LLQDLMHIESGKVPLPNYKP+V NGS Y DEQ
Sbjct: 61 LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQ 92

[Close]

BLAST of CcUC08G159300 vs. ExPASy TrEMBL
Match: A0A0A0LPB1 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361710 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 8.0e-40
Identity = 86/92 (93.48%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDI
Sbjct: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60

Query: 61 LLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQ 93
          LLQDLMHIESGKVPLPNYKPI  NGS Y DEQ
Sbjct: 61 LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQ 92

[Close]

BLAST of CcUC08G159300 vs. ExPASy TrEMBL
Match: A0A6J1K2Q1 (protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111491860 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 4.0e-39
Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MA+S FKSSGSSSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDI
Sbjct: 1  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61 LLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQ 93
          L+QDLMHIESGK+PLPNYKPIVSNG+ YGDEQ
Sbjct: 61 LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQ 92

[Close]

BLAST of CcUC08G159300 vs. ExPASy TrEMBL
Match: A0A6J1HFA3 (protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111462510 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 4.0e-39
Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MA+S FKSSGSSSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDI
Sbjct: 1  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61 LLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQ 93
          L+QDLMHIESGK+PLPNYKPIVSNG+ YGDEQ
Sbjct: 61 LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQ 92

[Close]

BLAST of CcUC08G159300 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 112.8 bits (281), Expect = 2.5e-25
Identity = 53/83 (63.86%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 8  SSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMH 67
          +S SS S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++
Sbjct: 4  NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLIN 63

Query: 68 IESGKVPLPNYKPIVSNGSEYGD 91
          IE+G+VPLPNYK   SN     D
Sbjct: 64 IETGRVPLPNYKTFESNSRSIND 86

[Close]

BLAST of CcUC08G159300 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 112.8 bits (281), Expect = 2.5e-25
Identity = 53/83 (63.86%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 8  SSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMH 67
          +S SS S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++
Sbjct: 4  NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLIN 63

Query: 68 IESGKVPLPNYKPIVSNGSEYGD 91
          IE+G+VPLPNYK   SN     D
Sbjct: 64 IETGRVPLPNYKTFESNSRSIND 86

[Close]

BLAST of CcUC08G159300 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 109.0 bits (271), Expect = 3.6e-24
Identity = 59/97 (60.82%), Postives = 70/97 (72.16%), Query Frame = 0


Query: 1  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASSS     SSSSSWT KQNK FE AL +Y +DTPDRWQ VA+AVG K+AEEVKRHYDI
Sbjct: 1  MASSSM----SSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDI 60

Query: 61 LLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQSGHDN 98
          L++DLM+IE   VPLP YK +     + G +  G D+
Sbjct: 61 LVEDLMNIEQDLVPLPKYKTV-----DVGSKSRGIDD 88

[Close]

BLAST of CcUC08G159300 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 104.8 bits (260), Expect = 6.7e-23
Identity = 51/79 (64.56%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 1  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASSS   S  SS SWT KQNK FE AL  Y +DTP+RWQ VA+ VGGKT EEVKRHY++
Sbjct: 1  MASSSM--SSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYEL 60

Query: 61 LLQDLMHIESGKVPLPNYK 80
          L+QD+  IE+G VP PNY+
Sbjct: 61 LVQDINSIENGHVPFPNYR 77

[Close]

BLAST of CcUC08G159300 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-22
Identity = 51/86 (59.30%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 1  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MAS S  S G  S SWT+KQNK FE AL +Y +DTPDRW  VARAVGGKT EE KR YD+
Sbjct: 1  MASGSMSSYG--SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDL 60

Query: 61 LLQDLMHIESGKVPLPNYKPIVSNGS 87
          L++D+  IE+G VP P+YK    N +
Sbjct: 61 LVRDIESIENGHVPFPDYKTTTGNSN 84

The following BLAST results are available for this feature:

BLAST of CcUC08G159300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884277.1	1.3e-41	97.83	protein RADIALIS-like 4 [Benincasa hispida]	[more]
XP_008444724.1	1.9e-40	94.57	PREDICTED: protein RADIALIS-like 4 [Cucumis melo]	[more]
KAA0065228.1	1.9e-40	94.57	protein RADIALIS-like 4 [Cucumis melo var. makuwa]	[more]
XP_004152694.1	1.6e-39	93.48	protein RADIALIS-like 4 [Cucumis sativus] >KGN62607.1 hypothetical protein Csa_0...	[more]
XP_022961874.1	8.2e-39	90.22	protein RADIALIS-like 4 [Cucurbita moschata] >XP_022996692.1 protein RADIALIS-li...	[more]

BLAST of CcUC08G159300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1A173	3.5e-24	63.86	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q8GW75	5.0e-23	60.82	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
F4JVB8	9.4e-22	64.56	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	3.6e-21	59.30	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q6NNN0	8.0e-21	59.09	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]

BLAST of CcUC08G159300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VC75	9.4e-41	94.57	Protein RADIALIS-like 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BBS2	9.4e-41	94.57	protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487975 PE=4 SV=1	[more]
A0A0A0LPB1	8.0e-40	93.48	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361710 PE=4 S...	[more]
A0A6J1K2Q1	4.0e-39	90.22	protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111491860 PE=4 SV=1	[more]
A0A6J1HFA3	4.0e-39	90.22	protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111462510 PE=4 SV=1	[more]

BLAST of CcUC08G159300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75250.1	2.5e-25	63.86	RAD-like 6	[more]
AT1G75250.2	2.5e-25	63.86	RAD-like 6	[more]
AT1G19510.1	3.6e-24	60.82	RAD-like 5	[more]
AT4G39250.1	6.7e-23	64.56	RAD-like 1	[more]
AT2G21650.1	2.5e-22	59.30	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 12..64 e-value: 3.2E-7 score: 40.0
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 8..62 score: 6.283716
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 16..58 e-value: 1.18735E-5 score: 38.7106
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..58 e-value: 6.6E-6 score: 26.2
None	No IPR available	GENE3D	1.10.10.60		coord: 7..75 e-value: 4.3E-22 score: 79.7
None	No IPR available	PANTHER	PTHR43952:SF29	PROTEIN RADIALIS-LIKE 3	coord: 1..79
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..79
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 14..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC08G159300.1	CcUC08G159300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity