CcUC08G154910 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC08G154910
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionConserved peptide upstream open reading frame 19
LocationCicolChr08: 23291554 .. 23291793 (-)
RNA-Seq ExpressionCcUC08G154910
SyntenyCcUC08G154910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGAACGGGCCTCTCTCTTTTTGTCATCGATTGGATTGCTTGGAGAGTATTGTCCTACGTCTAGGAAAAAGATCAGTTGTGCTGAGACTATTGGCTGCATGCATCTTGAGTTGCTTGGAGGTCATAGAAAAGCACGTGATCTCGGTTTCCATTTTATGCGGCCTTTCCCAGCTGCTCAAGGAGCGTTAGGACCTTGTGAAGATACTGCTACTGCTACTGCTACCCATCTTTTCTAA

mRNA sequence

ATGTCTGAACGGGCCTCTCTCTTTTTGTCATCGATTGGATTGCTTGGAGAGTATTGTCCTACGTCTAGGAAAAAGATCAGTTGTGCTGAGACTATTGGCTGCATGCATCTTGAGTTGCTTGGAGGTCATAGAAAAGCACGTGATCTCGGTTTCCATTTTATGCGGCCTTTCCCAGCTGCTCAAGGAGCGTTAGGACCTTGTGAAGATACTGCTACTGCTACTGCTACCCATCTTTTCTAA

Coding sequence (CDS)

ATGTCTGAACGGGCCTCTCTCTTTTTGTCATCGATTGGATTGCTTGGAGAGTATTGTCCTACGTCTAGGAAAAAGATCAGTTGTGCTGAGACTATTGGCTGCATGCATCTTGAGTTGCTTGGAGGTCATAGAAAAGCACGTGATCTCGGTTTCCATTTTATGCGGCCTTTCCCAGCTGCTCAAGGAGCGTTAGGACCTTGTGAAGATACTGCTACTGCTACTGCTACCCATCTTTTCTAA

Protein sequence

MSERASLFLSSIGLLGEYCPTSRKKISCAETIGCMHLELLGGHRKARDLGFHFMRPFPAAQGALGPCEDTATATATHLF
Homology
BLAST of CcUC08G154910 vs. NCBI nr
Match: KAA0064818.1 (ATP synthase subunit alpha [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 7.2e-28
Identity = 66/74 (89.19%), Postives = 67/74 (90.54%), Query Frame = 0

Query: 1  MSERASLFLSSIGLLGEYCPTSRKKISCAETIGCMHLELLGGHRKARDLGFHFMRPFPAA 60
          MSERASLFLSSIGLLGEYCPTSRKKISCAETIGCMHLELLG HRKAR LGFHFMR FPAA
Sbjct: 22 MSERASLFLSSIGLLGEYCPTSRKKISCAETIGCMHLELLGVHRKARGLGFHFMRSFPAA 81

Query: 61 QGALGPCEDTATAT 75
          Q A G  EDTAT+T
Sbjct: 82 QRASGLFEDTATST 95

BLAST of CcUC08G154910 vs. NCBI nr
Match: KAG7020201.1 (Eukaryotic translation initiation factor 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 87.8 bits (216), Expect = 4.5e-14
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 0

Query: 1  MSERASLFLSSIGLLGEYCPTSRKKISCAETIGCMHLELLGGHRKA-RDLG 51
          MSERA+LFLSSIGLLGEYCPTSRKK SCAETIGCMHLEL GGH  + R++G
Sbjct: 16 MSERATLFLSSIGLLGEYCPTSRKKYSCAETIGCMHLELPGGHSNSPRNIG 66

BLAST of CcUC08G154910 vs. NCBI nr
Match: KAG6585281.1 (Eukaryotic translation initiation factor 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.3 bits (212), Expect = 1.3e-13
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 0

Query: 1  MSERASLFLSSIGLLGEYCPTSRKKISCAETIGCMHLELLGGH 44
          MSERA+LFLSSIGLLGEYCPTSRKK SCAETIGCMHLEL GGH
Sbjct: 1  MSERATLFLSSIGLLGEYCPTSRKKYSCAETIGCMHLELPGGH 43

BLAST of CcUC08G154910 vs. NCBI nr
Match: EXB60481.1 (hypothetical protein L484_014936 [Morus notabilis])

HSP 1 Score: 77.0 bits (188), Expect = 8.0e-11
Identity = 41/61 (67.21%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 1  MSERASLFLSSIGLLGEYCPTSRKKI-SCAETIGCMHLELLGGHRKARDLGFHFMRPFPA 60
          MSER + FLSSIGLLGEYCPTSRKK  S A+ +GCMHL L+ G  K   LG+ FMRPFP 
Sbjct: 1  MSERVTHFLSSIGLLGEYCPTSRKKDGSTADKVGCMHLGLIEG-CKTHFLGYLFMRPFPV 60

BLAST of CcUC08G154910 vs. NCBI nr
Match: PPD71333.1 (hypothetical protein GOBAR_DD31780 [Gossypium barbadense])

HSP 1 Score: 70.5 bits (171), Expect = 7.5e-09
Identity = 39/62 (62.90%), Postives = 43/62 (69.35%), Query Frame = 0

Query: 1  MSERASLFLSSIGLLGEYCPTSRKK-ISCAETIGCMHLELLGGHRKARDLGFHFMRPFPA 60
          MSERASLFLSSIGLLGEYCPTSRKK  S    I CMH+E    H     LGF FM+  P+
Sbjct: 1  MSERASLFLSSIGLLGEYCPTSRKKNRSSYSEISCMHIEANQRH----SLGFRFMQHLPS 58

Query: 61 AQ 62
          A+
Sbjct: 61 AR 58

BLAST of CcUC08G154910 vs. ExPASy TrEMBL
Match: A0A5A7VB37 (ATP synthase subunit alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001260 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.5e-28
Identity = 66/74 (89.19%), Postives = 67/74 (90.54%), Query Frame = 0

Query: 1  MSERASLFLSSIGLLGEYCPTSRKKISCAETIGCMHLELLGGHRKARDLGFHFMRPFPAA 60
          MSERASLFLSSIGLLGEYCPTSRKKISCAETIGCMHLELLG HRKAR LGFHFMR FPAA
Sbjct: 22 MSERASLFLSSIGLLGEYCPTSRKKISCAETIGCMHLELLGVHRKARGLGFHFMRSFPAA 81

Query: 61 QGALGPCEDTATAT 75
          Q A G  EDTAT+T
Sbjct: 82 QRASGLFEDTATST 95

BLAST of CcUC08G154910 vs. ExPASy TrEMBL
Match: W9QZ52 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_014936 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-11
Identity = 41/61 (67.21%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 1  MSERASLFLSSIGLLGEYCPTSRKKI-SCAETIGCMHLELLGGHRKARDLGFHFMRPFPA 60
          MSER + FLSSIGLLGEYCPTSRKK  S A+ +GCMHL L+ G  K   LG+ FMRPFP 
Sbjct: 1  MSERVTHFLSSIGLLGEYCPTSRKKDGSTADKVGCMHLGLIEG-CKTHFLGYLFMRPFPV 60

BLAST of CcUC08G154910 vs. ExPASy TrEMBL
Match: A0A5D2L037 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D05G254800v1 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.6e-09
Identity = 39/62 (62.90%), Postives = 43/62 (69.35%), Query Frame = 0

Query: 1  MSERASLFLSSIGLLGEYCPTSRKK-ISCAETIGCMHLELLGGHRKARDLGFHFMRPFPA 60
          MSERASLFLSSIGLLGEYCPTSRKK  S    I CMH+E    H     LGF FM+  P+
Sbjct: 1  MSERASLFLSSIGLLGEYCPTSRKKNRSSYSEISCMHIEANQRH----SLGFRFMQHLPS 58

Query: 61 AQ 62
          A+
Sbjct: 61 AR 58

BLAST of CcUC08G154910 vs. ExPASy TrEMBL
Match: A0A7J8XXW1 (W2 domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_009501 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.6e-09
Identity = 39/62 (62.90%), Postives = 43/62 (69.35%), Query Frame = 0

Query: 1  MSERASLFLSSIGLLGEYCPTSRKK-ISCAETIGCMHLELLGGHRKARDLGFHFMRPFPA 60
          MSERASLFLSSIGLLGEYCPTSRKK  S    I CMH+E    H     LGF FM+  P+
Sbjct: 1  MSERASLFLSSIGLLGEYCPTSRKKNRSSYSEISCMHIEANQRH----SLGFRFMQHLPS 58

Query: 61 AQ 62
          A+
Sbjct: 61 AR 58

BLAST of CcUC08G154910 vs. ExPASy TrEMBL
Match: A0A7J9HFE2 (W2 domain-containing protein OS=Gossypium harknessii OX=34285 GN=Gohar_024121 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.6e-09
Identity = 39/62 (62.90%), Postives = 43/62 (69.35%), Query Frame = 0

Query: 1  MSERASLFLSSIGLLGEYCPTSRKK-ISCAETIGCMHLELLGGHRKARDLGFHFMRPFPA 60
          MSERASLFLSSIGLLGEYCPTSRKK  S    I CMH+E    H     LGF FM+  P+
Sbjct: 1  MSERASLFLSSIGLLGEYCPTSRKKNRSSYSEISCMHIEANQRH----SLGFRFMQHLPS 58

Query: 61 AQ 62
          A+
Sbjct: 61 AR 58

BLAST of CcUC08G154910 vs. TAIR 10
Match: AT1G36732.1 (conserved peptide upstream open reading frame 19 )

HSP 1 Score: 46.6 bits (109), Expect = 1.1e-05
Identity = 29/59 (49.15%), Postives = 34/59 (57.63%), Query Frame = 0

Query: 1  MSERASLFLSSIGLLGEYCPTSRKKISCAETIGCMHLELLGGHRKARD----LGFHFMR 56
          MSE+ASLF SSI LLGEYCP SRKK +            +GG R   D    +GF FM+
Sbjct: 1  MSEQASLFQSSIRLLGEYCPISRKKST----------HKVGGLRFEEDITSCIGFQFMQ 49

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0064818.17.2e-2889.19ATP synthase subunit alpha [Cucumis melo var. makuwa][more]
KAG7020201.14.5e-1482.35Eukaryotic translation initiation factor 5, partial [Cucurbita argyrosperma subs... [more]
KAG6585281.11.3e-1393.02Eukaryotic translation initiation factor 5, partial [Cucurbita argyrosperma subs... [more]
EXB60481.18.0e-1167.21hypothetical protein L484_014936 [Morus notabilis][more]
PPD71333.17.5e-0962.90hypothetical protein GOBAR_DD31780 [Gossypium barbadense][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VB373.5e-2889.19ATP synthase subunit alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... [more]
W9QZ523.9e-1167.21Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_014936 PE=4 SV=1[more]
A0A5D2L0373.6e-0962.90Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D05G254800v1 P... [more]
A0A7J8XXW13.6e-0962.90W2 domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_009501 PE=3 S... [more]
A0A7J9HFE23.6e-0962.90W2 domain-containing protein OS=Gossypium harknessii OX=34285 GN=Gohar_024121 PE... [more]
Match NameE-valueIdentityDescription
AT1G36732.11.1e-0549.15conserved peptide upstream open reading frame 19 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC08G154910.1CcUC08G154910.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0097159 organic cyclic compound binding