CcUC08G152720 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC08G152720
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr08: 21105175 .. 21105505 (+)
RNA-Seq ExpressionCcUC08G152720
SyntenyCcUC08G152720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGACGGAGGGAGAGAGAAGTTGTAGGGTTAGGGTGCGGAATCACGTTGTGCGCCGTAATTTCACCGGCGTGCGAATTCGCTAGGTCTATACTCACTAAATTACGCCGCCGCCCTAACAATAACACTGGCAGGACTCAGAATAGAGGATTCGAAGAGTGCTCGAGATCACCGGTGAGCGGCTGAAAGAAGACAAAGAAGTTAGAATACGATGACAAATGGCGTCAGCACCGGATGTAAGGTTCGTGCGGCTGTTTGGCTGCCGAAGAGCGAGGCGGAGCCTAGCCGGAGGGCTGTTAGGGTTCGTGGAGGTCGCAAAGGACATTGA

mRNA sequence

ATGGTGAGACGGAGGGAGAGAGAAGTTGTAGGGTTAGGGTGCGGAATCACGTTGTGCGCCGTAATTTCACCGGCGTGCGAATTCGCTAGGTCTATACTCACTAAATTACGCCGCCGCCCTAACAATAACACTGGCAGGACTCAGAATAGAGGATTCGAAGAGTGCTCGAGATCACCGGTTCGTGCGGCTGTTTGGCTGCCGAAGAGCGAGGCGGAGCCTAGCCGGAGGGCTGTTAGGGTTCGTGGAGGTCGCAAAGGACATTGA

Coding sequence (CDS)

ATGGTGAGACGGAGGGAGAGAGAAGTTGTAGGGTTAGGGTGCGGAATCACGTTGTGCGCCGTAATTTCACCGGCGTGCGAATTCGCTAGGTCTATACTCACTAAATTACGCCGCCGCCCTAACAATAACACTGGCAGGACTCAGAATAGAGGATTCGAAGAGTGCTCGAGATCACCGGTTCGTGCGGCTGTTTGGCTGCCGAAGAGCGAGGCGGAGCCTAGCCGGAGGGCTGTTAGGGTTCGTGGAGGTCGCAAAGGACATTGA

Protein sequence

MVRRREREVVGLGCGITLCAVISPACEFARSILTKLRRRPNNNTGRTQNRGFEECSRSPVRAAVWLPKSEAEPSRRAVRVRGGRKGH
Homology
BLAST of CcUC08G152720 vs. NCBI nr
Match: KGN46091.1 (hypothetical protein Csa_005100 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 3.6e-12
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 0

Query: 1  MVRRREREVVGLGCGITLCAVISPACEFARSILTKLRRR--PNNNTGRTQNRGFE-ECSR 58
          MVRR+ERE +G+GCG+ LCAVISPACEFAR+ILTKLRRR  PN   G T+N G + ECSR
Sbjct: 1  MVRRKERETLGIGCGVALCAVISPACEFARAILTKLRRRPCPNIYNGSTENCGSQKECSR 60

BLAST of CcUC08G152720 vs. NCBI nr
Match: TYK04453.1 (hypothetical protein E5676_scaffold409G00580 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 3.8e-06
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 0

Query: 1  MVRRREREVVGLGCGITLCAVISPACEFARSI--LTKLRRRPNNNTGRTQNRGFEECSRS 60
          MVRR+ERE++G+GCGI LCAVISPACEFAR    ++  R +      R +  G E  S +
Sbjct: 1  MVRRKEREILGIGCGIPLCAVISPACEFARDTHKISGERVKEEEEVRRRRKTGAERSSGA 60

Query: 61 PVRA 63
          P  A
Sbjct: 61 PTEA 64

BLAST of CcUC08G152720 vs. ExPASy TrEMBL
Match: A0A0A0KEA3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G052660 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.7e-12
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 0

Query: 1  MVRRREREVVGLGCGITLCAVISPACEFARSILTKLRRR--PNNNTGRTQNRGFE-ECSR 58
          MVRR+ERE +G+GCG+ LCAVISPACEFAR+ILTKLRRR  PN   G T+N G + ECSR
Sbjct: 1  MVRRKERETLGIGCGVALCAVISPACEFARAILTKLRRRPCPNIYNGSTENCGSQKECSR 60

BLAST of CcUC08G152720 vs. ExPASy TrEMBL
Match: A0A5D3BXJ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00580 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.9e-06
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 0

Query: 1  MVRRREREVVGLGCGITLCAVISPACEFARSI--LTKLRRRPNNNTGRTQNRGFEECSRS 60
          MVRR+ERE++G+GCGI LCAVISPACEFAR    ++  R +      R +  G E  S +
Sbjct: 1  MVRRKEREILGIGCGIPLCAVISPACEFARDTHKISGERVKEEEEVRRRRKTGAERSSGA 60

Query: 61 PVRA 63
          P  A
Sbjct: 61 PTEA 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN46091.13.6e-1270.00hypothetical protein Csa_005100 [Cucumis sativus][more]
TYK04453.13.8e-0650.00hypothetical protein E5676_scaffold409G00580 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KEA31.7e-1270.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G052660 PE=4 SV=1[more]
A0A5D3BXJ41.9e-0650.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC08G152720.1CcUC08G152720.1mRNA