CcUC08G151870 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC08G151870
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionDAD domain-containing protein
LocationCicolChr08: 20165183 .. 20165398 (+)
RNA-Seq ExpressionCcUC08G151870
SyntenyCcUC08G151870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGATCCAGATGTTGCGCGAGCTAAAGATCGAGATTCCGTCGCCGTCGGATTTTCCTCTGTATCCGACGTGCGTTGGAGACGAGCGGATGTTGGTGTGGCCGGTAGGAATACAGTGGTGGATGTTGATATTGTGGATGATTATATTCGAGATGTATTGGAGTGTGACGCAGCCGCCGCCGGTGATATGGACATTGGCACCGCGGCCATCTAG

mRNA sequence

ATGATCGATCCAGATGTTGCGCGAGCTAAAGATCGAGATTCCGTCGCCGTCGGATTTTCCTCTGTATCCGACGTGCGTTGGAGACGAGCGGATGTTGGTGTGGCCGGTAGGAATACAGTGGTGGATGTTGATATTGTGGATGATTATATTCGAGATGTATTGGAGTGTGACGCAGCCGCCGCCGGTGATATGGACATTGGCACCGCGGCCATCTAG

Coding sequence (CDS)

ATGATCGATCCAGATGTTGCGCGAGCTAAAGATCGAGATTCCGTCGCCGTCGGATTTTCCTCTGTATCCGACGTGCGTTGGAGACGAGCGGATGTTGGTGTGGCCGGTAGGAATACAGTGGTGGATGTTGATATTGTGGATGATTATATTCGAGATGTATTGGAGTGTGACGCAGCCGCCGCCGGTGATATGGACATTGGCACCGCGGCCATCTAG

Protein sequence

MIDPDVARAKDRDSVAVGFSSVSDVRWRRADVGVAGRNTVVDVDIVDDYIRDVLECDAAAAGDMDIGTAAI
Homology
BLAST of CcUC08G151870 vs. NCBI nr
Match: OAY64628.1 (hypothetical protein ACMD2_01918 [Ananas comosus])

HSP 1 Score: 78.2 bits (191), Expect = 3.2e-11
Identity = 41/71 (57.75%), Postives = 53/71 (74.65%), Query Frame = 0

Query: 1   MIDPDVARAKDRDSVAVGFSSVSDVRWRRADVGVAGRNTVVDVDIVDDYIRDVLECDAAA 60
           ++DPD  RA  RD+VAVG  + + VR R A VGVA  + VVDVD+V+DY+ DVLE DA A
Sbjct: 205 VVDPDAHRAVQRDAVAVGARAPAVVRRRGAHVGVARGDAVVDVDVVNDYVGDVLEGDAGA 264

Query: 61  AGDMDIGTAAI 72
           AGD+D+G AA+
Sbjct: 265 AGDVDVGAAAV 275

BLAST of CcUC08G151870 vs. NCBI nr
Match: KAF7820188.1 (hypothetical protein G2W53_025643 [Senna tora])

HSP 1 Score: 73.6 bits (179), Expect = 7.9e-10
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 0

Query: 1   MIDPDVARAKDRDSVAVGFSSVSDVRWRRADVGVAGRNTVVDVDIVDDYIRDVLECDAAA 60
           ++DPD+AR +D D VAV  +    VR   ADVGV G   VVDVD+VDD + DVLE +AA 
Sbjct: 133 VVDPDLARREDGDPVAVRLAPPPHVRGAGADVGVPGGLAVVDVDVVDDDVGDVLEREAAV 192

Query: 61  AGDMDIGTAAI 72
           AGD+D+G AA+
Sbjct: 193 AGDVDVGAAAV 203

BLAST of CcUC08G151870 vs. NCBI nr
Match: KYP69131.1 (hypothetical protein KK1_008314, partial [Cajanus cajan])

HSP 1 Score: 64.3 bits (155), Expect = 4.8e-07
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 0

Query: 1   MIDPDVARAKDRDSVAVGFSSVSDVRWRRADVGVAGRNTVVDVDIVDDYIRDVLECDAAA 60
           M+DPD+  A+D + VAV F S +DVR   ADVGV G   VV VD+VDD +R VLE DA  
Sbjct: 100 MVDPDLPGAEDGNPVAVRFPSPADVRGAGADVGVPGGGAVVHVDVVDDDVRHVLERDAPV 159

Query: 61  AGDMDIGTAAI 72
              + +G A +
Sbjct: 160 PAHLHVGAAPV 170

BLAST of CcUC08G151870 vs. NCBI nr
Match: RWV94256.1 (hypothetical protein GW17_00043216, partial [Ensete ventricosum])

HSP 1 Score: 64.3 bits (155), Expect = 4.8e-07
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 0

Query: 1   MIDPDVARAKDRDSVAVGFSSVSDVRWRRADVGVAGRNTVVDVDIVDDYIRDVLECDAAA 60
           ++DPDVA A+D +++AVG    S V    AD GV G   +VDV+ VDD + DVL+ DA+A
Sbjct: 48  VVDPDVAGAEDGNAIAVGHGPPSIVGGGAADHGVPGGLAIVDVEAVDDDVGDVLDGDASA 107

Query: 61  AGDMDIGTAAI 72
            GD+D+G A +
Sbjct: 108 VGDVDVGAAPV 118

BLAST of CcUC08G151870 vs. NCBI nr
Match: EYU41599.1 (hypothetical protein MIMGU_mgv1a012287mg [Erythranthe guttata])

HSP 1 Score: 63.9 bits (154), Expect = 6.3e-07
Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = 0

Query: 1   MIDPDVARAKDRDSVAVGFSSVSDVRWRRADVGVAGRNTVVDVDIVDDYIRDVLECDAAA 60
           ++DP V R +   SV V F     VR  R DV  +G   VVDVD+VDD++ DVLE DA A
Sbjct: 75  VVDPYVPRPEHGYSVPVRFRPPPVVRGARTDVCFSGLVAVVDVDVVDDHVADVLERDAPA 134

Query: 61  AGDMDIGTAAI 72
           AGD+D+G AA+
Sbjct: 135 AGDVDVGAAAV 145

BLAST of CcUC08G151870 vs. ExPASy TrEMBL
Match: A0A199UIS1 (Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_01918 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.6e-11
Identity = 41/71 (57.75%), Postives = 53/71 (74.65%), Query Frame = 0

Query: 1   MIDPDVARAKDRDSVAVGFSSVSDVRWRRADVGVAGRNTVVDVDIVDDYIRDVLECDAAA 60
           ++DPD  RA  RD+VAVG  + + VR R A VGVA  + VVDVD+V+DY+ DVLE DA A
Sbjct: 205 VVDPDAHRAVQRDAVAVGARAPAVVRRRGAHVGVARGDAVVDVDVVNDYVGDVLEGDAGA 264

Query: 61  AGDMDIGTAAI 72
           AGD+D+G AA+
Sbjct: 265 AGDVDVGAAAV 275

BLAST of CcUC08G151870 vs. ExPASy TrEMBL
Match: A0A151TQ30 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_008314 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.3e-07
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 0

Query: 1   MIDPDVARAKDRDSVAVGFSSVSDVRWRRADVGVAGRNTVVDVDIVDDYIRDVLECDAAA 60
           M+DPD+  A+D + VAV F S +DVR   ADVGV G   VV VD+VDD +R VLE DA  
Sbjct: 100 MVDPDLPGAEDGNPVAVRFPSPADVRGAGADVGVPGGGAVVHVDVVDDDVRHVLERDAPV 159

Query: 61  AGDMDIGTAAI 72
              + +G A +
Sbjct: 160 PAHLHVGAAPV 170

BLAST of CcUC08G151870 vs. ExPASy TrEMBL
Match: A0A444D7Y4 (Uncharacterized protein (Fragment) OS=Ensete ventricosum OX=4639 GN=GW17_00043216 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.3e-07
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 0

Query: 1   MIDPDVARAKDRDSVAVGFSSVSDVRWRRADVGVAGRNTVVDVDIVDDYIRDVLECDAAA 60
           ++DPDVA A+D +++AVG    S V    AD GV G   +VDV+ VDD + DVL+ DA+A
Sbjct: 48  VVDPDVAGAEDGNAIAVGHGPPSIVGGGAADHGVPGGLAIVDVEAVDDDVGDVLDGDASA 107

Query: 61  AGDMDIGTAAI 72
            GD+D+G A +
Sbjct: 108 VGDVDVGAAPV 118

BLAST of CcUC08G151870 vs. ExPASy TrEMBL
Match: A0A314ZLG9 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_29454 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.0e-07
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 0

Query: 1  MIDPDVARAKDRDSVAVGFSSVSDVRWRRADVGVAGRNTVVDVDIVDDYIRDVLECDAAA 60
          M+DPD A AK+ D+VAV FS+  DV     DV V     VVDVD+V D + DVLE  AAA
Sbjct: 1  MVDPDFASAKEGDAVAVRFSTPPDVGGAGGDVSVTRGFAVVDVDVVYDDVGDVLERYAAA 60

Query: 61 AGDMDIGTAAI 72
          AGD+D+   A+
Sbjct: 61 AGDVDVDAPAV 71

BLAST of CcUC08G151870 vs. ExPASy TrEMBL
Match: A0A022RNF3 (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a012287mg PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.0e-07
Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = 0

Query: 1   MIDPDVARAKDRDSVAVGFSSVSDVRWRRADVGVAGRNTVVDVDIVDDYIRDVLECDAAA 60
           ++DP V R +   SV V F     VR  R DV  +G   VVDVD+VDD++ DVLE DA A
Sbjct: 75  VVDPYVPRPEHGYSVPVRFRPPPVVRGARTDVCFSGLVAVVDVDVVDDHVADVLERDAPA 134

Query: 61  AGDMDIGTAAI 72
           AGD+D+G AA+
Sbjct: 135 AGDVDVGAAAV 145

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
OAY64628.13.2e-1157.75hypothetical protein ACMD2_01918 [Ananas comosus][more]
KAF7820188.17.9e-1054.93hypothetical protein G2W53_025643 [Senna tora][more]
KYP69131.14.8e-0749.30hypothetical protein KK1_008314, partial [Cajanus cajan][more]
RWV94256.14.8e-0747.89hypothetical protein GW17_00043216, partial [Ensete ventricosum][more]
EYU41599.16.3e-0750.70hypothetical protein MIMGU_mgv1a012287mg [Erythranthe guttata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A199UIS11.6e-1157.75Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_01918 PE=4 SV=1[more]
A0A151TQ302.3e-0749.30Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_008314 PE=4 S... [more]
A0A444D7Y42.3e-0747.89Uncharacterized protein (Fragment) OS=Ensete ventricosum OX=4639 GN=GW17_0004321... [more]
A0A314ZLG93.0e-0752.11Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_294... [more]
A0A022RNF33.0e-0750.70Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a012287mg PE... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC08G151870.1CcUC08G151870.1mRNA