CcUC08G150620 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC08G150620
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	dormancy-associated protein 2-like isoform X2
Location	CicolChr08: 18811299 .. 18812744 (+)
RNA-Seq Expression	CcUC08G150620
Synteny	CcUC08G150620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTTCCACTATAACTACTCACCAAAATTTGTATAATCTTACCATTGTTTTTCAAGCCAATTACTTTTTAGCTCCAAAATTTTAACTTCCCTTTTGTCTCAAAATGGCGAACTCTAAAGCTGCCGGAGTCATGGCCATGGCCGCGTTCCTTGCCCTCTTCCTCTTCATATCCACCGGCAACGTGGCGGCCGCTCTGCCCTATCAGTTGATGTTACCACAACAATTTGAACTTGGTCAGTATGATTTACACCCTAAACTTTTTAAGTGATTGTATTGTCGTTTAATTTTTTAACTTTAAAAAAACTCTAGGCTCAATTTAAATTTAACAGTTTAAAATTAAGTATTTTTTTTTTTAATGGAGTTTTTGGCATATTATATAACAAAAACAAGTTAAGTAATTCATATAATAGTTTGATTAATAAGATATATAGGATTATTTAACAATGTTTGATCCCACTTTTGTAGTCAAATAACTAAATTGAATGAAGGTCATGTCAATATTCCCAATTTATTTTTATCTTTTATTCTATATTTTTTATCTTGATTTCTTTGTGGTTAAATTATAAATTGAATCCACAAACTTTTATAATTGTGGCTAATAAACCTAAAAGTTTTAAAAAGTATTTAATAGCTAACTTAAAAATATAAAATAAATTCTTATACTTTTAATTTTTTTTAAACATACTCGACCTATCTTAAAATTAACGAATCTATTAGACACAAAATTAAATTTTTATTTTTTTATAATAATTCATTAAGTTGATGCTAACATGTTAAAACAACTCAATTTCAATGGTAAACACCACCATTGAAATTCGTACATTTATCGAAAAATTAAACTTCGTCTTGTAATTATGTACCCCAAATACATATTTCTTAAAACTCCAACATATCAATTCTTAACTTCATAATTCGACTCAATGCTCCAAACACCCCAAAATTTTTTATTTTTTTTATTCAATAGTTTAGCAAACTTTAGAAAATGTCAAATATAAGTCAAACATCTACTAGACACACAAATTAATGAAAGTTACTTTATTAGATGCTACAATTGAATGTGTGAAGACTTAATATAAAGTTCAAAGTTACTTCATTTTATAAAAGTGGTTAATTTGATGTTTGTTTTAATCAGGACGAAAGGTTCTTGAAGAGAAATATGAACCTGATGGCAGAAGTGGATATAACAAATATGAACCCAATGGCAGAAGTGGCTACAATGGCAACAAGCCCACGGGAAGGGGAGGATATAATTAAACTTTATAATCTCTTCTACAAAATCATCCCTCTTTAATTATAATACTTTTTATAATATATAAATATATACACATATATATCATATGTGTGTTGATATAGATAAATAAATAAATGTTTGGGTTTGCGTTTGTGTATGTGTTTCTAATCTACATGTAAATTGGTGGTGTATATTATAATAATATGGATAGACT

mRNA sequence

CTTCTTCCACTATAACTACTCACCAAAATTTGTATAATCTTACCATTGTTTTTCAAGCCAATTACTTTTTAGCTCCAAAATTTTAACTTCCCTTTTGTCTCAAAATGGCGAACTCTAAAGCTGCCGGAGTCATGGCCATGGCCGCGTTCCTTGCCCTCTTCCTCTTCATATCCACCGGCAACGTGGCGGCCGCTCTGCCCTATCAGTTGATGTTACCACAACAATTTGAACTTGGACGAAAGGTTCTTGAAGAGAAATATGAACCTGATGGCAGAAGTGGATATAACAAATATGAACCCAATGGCAGAAGTGGCTACAATGGCAACAAGCCCACGGGAAGGGGAGGATATAATTAAACTTTATAATCTCTTCTACAAAATCATCCCTCTTTAATTATAATACTTTTTATAATATATAAATATATACACATATATATCATATGTGTGTTGATATAGATAAATAAATAAATGTTTGGGTTTGCGTTTGTGTATGTGTTTCTAATCTACATGTAAATTGGTGGTGTATATTATAATAATATGGATAGACT

Coding sequence (CDS)

ATGGCGAACTCTAAAGCTGCCGGAGTCATGGCCATGGCCGCGTTCCTTGCCCTCTTCCTCTTCATATCCACCGGCAACGTGGCGGCCGCTCTGCCCTATCAGTTGATGTTACCACAACAATTTGAACTTGGACGAAAGGTTCTTGAAGAGAAATATGAACCTGATGGCAGAAGTGGATATAACAAATATGAACCCAATGGCAGAAGTGGCTACAATGGCAACAAGCCCACGGGAAGGGGAGGATATAATTAA

Protein sequence

MANSKAAGVMAMAAFLALFLFISTGNVAAALPYQLMLPQQFELGRKVLEEKYEPDGRSGYNKYEPNGRSGYNGNKPTGRGGYN

Homology

[Close]

BLAST of CcUC08G150620 vs. NCBI nr
Match: XP_022993935.1 (P granule abnormality protein 1-like [Cucurbita maxima])

HSP 1 Score: 116.7 bits (291), Expect = 9.6e-23
Identity = 64/94 (68.09%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 1  MANSKAAGVMAMAAFLALFLFISTGNVAAALPYQLMLPQQFELGRKVLEEKY-------- 60
          MA+SKAAGVM MAAFLA+FL ISTG VAAAL Y+ ++PQ+F LGRKVLE+KY        
Sbjct: 1  MASSKAAGVMPMAAFLAVFLLISTGTVAAALSYESIIPQEFALGRKVLEDKYEANGRSGY 60

Query: 61 ---EPDGRSGYNKYEPNGRSGYNGNKPTGRGGYN 84
             EP GR GYN YEPNGRSGYN N+P GRGGYN
Sbjct: 61 NSNEPKGRGGYNSYEPNGRSGYNSNEPDGRGGYN 94

[Close]

BLAST of CcUC08G150620 vs. NCBI nr
Match: KAG7016430.1 (hypothetical protein SDJN02_21539, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.7 bits (291), Expect = 9.6e-23
Identity = 61/83 (73.49%), Postives = 70/83 (84.34%), Query Frame = 0


Query: 1  MANSKAAGVMAMAAFLALFLFISTGNVAAALPYQLMLPQQFELGRKVLEEKYEPDGRSGY 60
          MA+SKAAGVM MAAFLA+FL ISTGNV AAL Y+ ++PQ+F LG KVLE+KYE +GRSGY
Sbjct: 1  MASSKAAGVMPMAAFLAVFLLISTGNVVAALSYESIVPQEFALGPKVLEDKYEANGRSGY 60

Query: 61 NKYEPNGRSGYNGNKPTGRGGYN 84
          N  EPNGRSGYN N+P GR GYN
Sbjct: 61 NSNEPNGRSGYNSNEPNGRSGYN 83

[Close]

BLAST of CcUC08G150620 vs. NCBI nr
Match: KAG6578909.1 (hypothetical protein SDJN03_23357, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-22
Identity = 61/83 (73.49%), Postives = 70/83 (84.34%), Query Frame = 0


Query: 1  MANSKAAGVMAMAAFLALFLFISTGNVAAALPYQLMLPQQFELGRKVLEEKYEPDGRSGY 60
          MA+SKAAGVM MAAFLA+FL ISTGNV AAL Y+ ++PQ+F LGRKVLE+KYE +GRSGY
Sbjct: 1  MASSKAAGVMPMAAFLAVFLLISTGNVVAALSYESIVPQEFALGRKVLEDKYEANGRSGY 60

Query: 61 NKYEPNGRSGYNGNKPTGRGGYN 84
          N  EPNGRSGYN N+  GR GYN
Sbjct: 61 NSNEPNGRSGYNSNESNGRSGYN 83

[Close]

BLAST of CcUC08G150620 vs. NCBI nr
Match: XP_022939479.1 (dormancy-associated protein 2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 115.9 bits (289), Expect = 1.6e-22
Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 1  MANSKAAGVMAMAAFLALFLFISTGNVAAALPYQLMLPQQFELGRKVLEEKYEPDGRSGY 60
          MA+SKAAGVM MAAFLA+FL IS GNV AAL Y+ ++PQ+F LGRKVLE+KYE  GRSGY
Sbjct: 1  MASSKAAGVMPMAAFLAVFLLISAGNVVAALSYESIVPQEFALGRKVLEDKYEAIGRSGY 60

Query: 61 NKYEPNGRSGYNGNKPTGRGGYN 84
          N  EPNGRSGYN N+P GR GYN
Sbjct: 61 NSNEPNGRSGYNSNEPNGRSGYN 83

[Close]

BLAST of CcUC08G150620 vs. NCBI nr
Match: XP_023551561.1 (N66 matrix protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114.4 bits (285), Expect = 4.7e-22
Identity = 60/83 (72.29%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 1  MANSKAAGVMAMAAFLALFLFISTGNVAAALPYQLMLPQQFELGRKVLEEKYEPDGRSGY 60
          MA+SKAAGVM MAAFLA+FL IS GNV AAL Y+ ++PQ+F LGRKVLE+KYE +GRSGY
Sbjct: 1  MASSKAAGVMPMAAFLAVFLLISAGNVVAALSYESIVPQEFALGRKVLEDKYEANGRSGY 60

Query: 61 NKYEPNGRSGYNGNKPTGRGGYN 84
          N  EPNGRSGYN N+  GR GYN
Sbjct: 61 NNNEPNGRSGYNSNESNGRSGYN 83

[Close]

BLAST of CcUC08G150620 vs. ExPASy TrEMBL
Match: A0A6J1JZW6 (P granule abnormality protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111489785 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.6e-23
Identity = 64/94 (68.09%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 1  MANSKAAGVMAMAAFLALFLFISTGNVAAALPYQLMLPQQFELGRKVLEEKY-------- 60
          MA+SKAAGVM MAAFLA+FL ISTG VAAAL Y+ ++PQ+F LGRKVLE+KY        
Sbjct: 1  MASSKAAGVMPMAAFLAVFLLISTGTVAAALSYESIIPQEFALGRKVLEDKYEANGRSGY 60

Query: 61 ---EPDGRSGYNKYEPNGRSGYNGNKPTGRGGYN 84
             EP GR GYN YEPNGRSGYN N+P GRGGYN
Sbjct: 61 NSNEPKGRGGYNSYEPNGRSGYNSNEPDGRGGYN 94

[Close]

BLAST of CcUC08G150620 vs. ExPASy TrEMBL
Match: A0A6J1FHA4 (dormancy-associated protein 2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111445371 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 7.9e-23
Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 1  MANSKAAGVMAMAAFLALFLFISTGNVAAALPYQLMLPQQFELGRKVLEEKYEPDGRSGY 60
          MA+SKAAGVM MAAFLA+FL IS GNV AAL Y+ ++PQ+F LGRKVLE+KYE  GRSGY
Sbjct: 1  MASSKAAGVMPMAAFLAVFLLISAGNVVAALSYESIVPQEFALGRKVLEDKYEAIGRSGY 60

Query: 61 NKYEPNGRSGYNGNKPTGRGGYN 84
          N  EPNGRSGYN N+P GR GYN
Sbjct: 61 NSNEPNGRSGYNSNEPNGRSGYN 83

[Close]

BLAST of CcUC08G150620 vs. ExPASy TrEMBL
Match: A0A6J1FLR8 (N66 matrix protein-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445371 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.1e-20
Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 1  MANSKAAGVMAMAAFLALFLFISTGNVAAALPYQLMLPQQFELGRKVLEEKYEPDGRSGY 60
          MA+SKAAGVM MAAFLA+FL IS GNV AAL Y+ ++PQ+F LGRKVLE+KYE  GRSGY
Sbjct: 1  MASSKAAGVMPMAAFLAVFLLISAGNVVAALSYESIVPQEFALGRKVLEDKYEAIGRSGY 60

Query: 61 NKYEPNGRSGYNGNKPTGRGGYN 84
          N  +PNGRSG N N+P GR  YN
Sbjct: 61 NSNKPNGRSGNNSNEPNGRSRYN 83

The following BLAST results are available for this feature:

BLAST of CcUC08G150620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022993935.1	9.6e-23	68.09	P granule abnormality protein 1-like [Cucurbita maxima]	[more]
KAG7016430.1	9.6e-23	73.49	hypothetical protein SDJN02_21539, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6578909.1	1.2e-22	73.49	hypothetical protein SDJN03_23357, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022939479.1	1.6e-22	73.49	dormancy-associated protein 2-like isoform X2 [Cucurbita moschata]	[more]
XP_023551561.1	4.7e-22	72.29	N66 matrix protein-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CcUC08G150620 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC08G150620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JZW6	4.6e-23	68.09	P granule abnormality protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111489785...	[more]
A0A6J1FHA4	7.9e-23	73.49	dormancy-associated protein 2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1FLR8	2.1e-20	69.88	N66 matrix protein-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445371...	[more]

BLAST of CcUC08G150620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC08G150620.1	CcUC08G150620.1	mRNA