CcUC08G150240 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC08G150240
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr08: 18256183 .. 18256587 (+)
RNA-Seq ExpressionCcUC08G150240
SyntenyCcUC08G150240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATCCAGAATCTCGCCGGAAGACAATCGTGTTCCTCTGCTTCTTAAACCCCAACAAATCGCTGACAAACTTTCCCCGATTCCGATTCCGACCGCCGGGGACGTGCCGGAGGTGGAACGTAAAACGTTTCCGGCGAACTTATCGACCGGATCGGAACTGGGGGTGAGGGTGAGGCCCAGAGGAGAGTTGATGGACGTGGTGGAGCCGGCGGTGGCGGAAGCGTCGAACCGGGCGGTTCAAATGGCTATTGGATACAGAGCCGGCGGTGGAAAAATGAGATCTGTGATTCCGAAGAAGAGGAAGTTAGTTAAGACAATGATGTATCACTCCATAAAGGACTTTGTCATATCACTCTTTCGTACCCCGCCGTCCGCCGGCGTCGGTCCCGGAGCTCCACCGTAA

mRNA sequence

ATGGGATCCAGAATCTCGCCGGAAGACAATCGTGTTCCTCTGCTTCTTAAACCCCAACAAATCGCTGACAAACTTTCCCCGATTCCGATTCCGACCGCCGGGGACGTGCCGGAGGTGGAACGTAAAACGTTTCCGGCGAACTTATCGACCGGATCGGAACTGGGGGTGAGGGTGAGGCCCAGAGGAGAGTTGATGGACGTGGTGGAGCCGGCGGTGGCGGAAGCGTCGAACCGGGCGGTTCAAATGGCTATTGGATACAGAGCCGGCGGTGGAAAAATGAGATCTGTGATTCCGAAGAAGAGGAAGTTAGTTAAGACAATGATGTATCACTCCATAAAGGACTTTGTCATATCACTCTTTCGTACCCCGCCGTCCGCCGGCGTCGGTCCCGGAGCTCCACCGTAA

Coding sequence (CDS)

ATGGGATCCAGAATCTCGCCGGAAGACAATCGTGTTCCTCTGCTTCTTAAACCCCAACAAATCGCTGACAAACTTTCCCCGATTCCGATTCCGACCGCCGGGGACGTGCCGGAGGTGGAACGTAAAACGTTTCCGGCGAACTTATCGACCGGATCGGAACTGGGGGTGAGGGTGAGGCCCAGAGGAGAGTTGATGGACGTGGTGGAGCCGGCGGTGGCGGAAGCGTCGAACCGGGCGGTTCAAATGGCTATTGGATACAGAGCCGGCGGTGGAAAAATGAGATCTGTGATTCCGAAGAAGAGGAAGTTAGTTAAGACAATGATGTATCACTCCATAAAGGACTTTGTCATATCACTCTTTCGTACCCCGCCGTCCGCCGGCGTCGGTCCCGGAGCTCCACCGTAA

Protein sequence

MGSRISPEDNRVPLLLKPQQIADKLSPIPIPTAGDVPEVERKTFPANLSTGSELGVRVRPRGELMDVVEPAVAEASNRAVQMAIGYRAGGGKMRSVIPKKRKLVKTMMYHSIKDFVISLFRTPPSAGVGPGAPP
Homology
BLAST of CcUC08G150240 vs. NCBI nr
Match: KGN47677.1 (hypothetical protein Csa_018325 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 2.0e-22
Identity = 64/99 (64.65%), Postives = 71/99 (71.72%), Query Frame = 0

Query: 35  DVPEVERKTFPANLSTGSELGVRVRPRGELMDVVEPAVAEASNRAVQMAIGYRAGGGKMR 94
           DVP V  + FP NL TGSELG+RVRP GE M VVE    EAS+R VQMA+GY+ GG KM+
Sbjct: 2   DVPGVGGQQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKMK 61

Query: 95  SVIPKKRKLVKTMMYHSIKDFVISLFRTPPSAGVGPGAP 134
           SVIP KRKLVK MMY SIK+FVIS F   PS G    AP
Sbjct: 62  SVIPMKRKLVKRMMYESIKNFVISRF---PSVGSSARAP 97

BLAST of CcUC08G150240 vs. NCBI nr
Match: KAE8647204.1 (hypothetical protein Csa_019006, partial [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-14
Identity = 47/70 (67.14%), Postives = 53/70 (75.71%), Query Frame = 0

Query: 65  MDVVEPAVAEASNRAVQMAIGYRAGGGKMRSVIPKKRKLVKTMMYHSIKDFVISLFRTPP 124
           +D+VE  VAEASN AVQM +GY+ G  KM SVIPK+RKLVKTMMYHSIK F+IS FR   
Sbjct: 1   VDMVEGTVAEASNPAVQMTMGYKGGCRKMISVIPKQRKLVKTMMYHSIKCFIISFFRLSF 60

Query: 125 SAGVGPGAPP 135
           S   G GAPP
Sbjct: 61  STATGTGAPP 70

BLAST of CcUC08G150240 vs. NCBI nr
Match: KAG6578935.1 (hypothetical protein SDJN03_23383, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-12
Identity = 55/117 (47.01%), Postives = 71/117 (60.68%), Query Frame = 0

Query: 16  LKPQQIADKLSPIPIPTA--GDVPEVERKTFPANLSTGSELGVRVRPRGELMDVVEPAVA 75
           +KP+ I +K+ P+ IPT     +P V  K FPA +  GS+  + VRP  E      PAVA
Sbjct: 1   MKPRPITEKI-PMQIPTTEYTPIPRVGSKKFPARIIAGSKPAL-VRPIRE-----SPAVA 60

Query: 76  EASNRAVQMAIGYRAGGGKMRSVIPKKRKLVKTMMYHSIKDFVISLFRTPPSAGVGP 131
           E +NR VQ            +SVIPKKR+LVKTMMYHS+K+F+ S+FR  PSAG  P
Sbjct: 61  ELANRTVQ-----------KKSVIPKKRRLVKTMMYHSMKNFIKSVFRRKPSAGAPP 99

BLAST of CcUC08G150240 vs. NCBI nr
Match: KAG6578934.1 (hypothetical protein SDJN03_23382, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-11
Identity = 49/101 (48.51%), Postives = 63/101 (62.38%), Query Frame = 0

Query: 30  IPTAGDVPEVERKTFPANLSTGSELGVRVRPRGELMDVVEPAVAEASNRAVQMAIGYRAG 89
           IPTA  +P V  + FPA++  GS+  + VRP GE      PA AE +NR VQ        
Sbjct: 3   IPTAEYIPGVGSEKFPASIIAGSKPAL-VRPIGE-----SPAAAELTNRTVQ-------- 62

Query: 90  GGKMRSVIPKKRKLVKTMMYHSIKDFVISLFRTPPSAGVGP 131
               +SVIPKKR+LVKTMMYH++K+F+ S+FR  PSAG  P
Sbjct: 63  ---KKSVIPKKRRLVKTMMYHAMKNFIKSVFRRKPSAGAPP 86

BLAST of CcUC08G150240 vs. NCBI nr
Match: KAG6602134.1 (hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.1 bits (183), Expect = 5.1e-10
Identity = 50/129 (38.76%), Postives = 65/129 (50.39%), Query Frame = 0

Query: 1   MGSRISPEDNRV-----PLLLKPQQIADKLSPIPIPTAGDVPEVERKTFPANLSTGSELG 60
           M  R+SP+DNR      P    P  +     P   P   ++  + +   P  +  G    
Sbjct: 1   MRFRVSPDDNRELPEQNPTAHHPPSVNGNHLPPIDPVKSEIATLTKLAIPYQICDGKAKS 60

Query: 61  VRVRPRGELMDVVEPAVAEASNRAVQMAIGYRAGGGKMRSVIPKKRKLVKTMMYHSIKDF 120
           V        +   +P  A  S  +V+    YRAG GK++SVIPKKRKLVKTMMYH IKDF
Sbjct: 61  VLP------LIPAKPDTAVTSTNSVE----YRAGIGKVKSVIPKKRKLVKTMMYHCIKDF 119

Query: 121 VISLFRTPP 125
           + SLFR PP
Sbjct: 121 LKSLFRPPP 119

BLAST of CcUC08G150240 vs. ExPASy TrEMBL
Match: A0A0A0KH01 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374700 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 9.8e-23
Identity = 64/99 (64.65%), Postives = 71/99 (71.72%), Query Frame = 0

Query: 35  DVPEVERKTFPANLSTGSELGVRVRPRGELMDVVEPAVAEASNRAVQMAIGYRAGGGKMR 94
           DVP V  + FP NL TGSELG+RVRP GE M VVE    EAS+R VQMA+GY+ GG KM+
Sbjct: 2   DVPGVGGQQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKMK 61

Query: 95  SVIPKKRKLVKTMMYHSIKDFVISLFRTPPSAGVGPGAP 134
           SVIP KRKLVK MMY SIK+FVIS F   PS G    AP
Sbjct: 62  SVIPMKRKLVKRMMYESIKNFVISRF---PSVGSSARAP 97

BLAST of CcUC08G150240 vs. ExPASy TrEMBL
Match: A0A6J1CJW3 (uncharacterized protein LOC111011963 OS=Momordica charantia OX=3673 GN=LOC111011963 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.8e-08
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 0

Query: 83  AIGYRAGGGKMRSVIPKKRKLVKTMMYHSIKDFVISLFRTPPSAGVGPGAPP 135
           AIG RA GGK++SVIPK+R LVKTM+Y+ IKDF+ISLFR PPSA   P  PP
Sbjct: 43  AIGSRA-GGKVKSVIPKRRILVKTMIYNFIKDFIISLFRPPPSAVPEPPPPP 93

BLAST of CcUC08G150240 vs. ExPASy TrEMBL
Match: A0A0A0KDQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 8.3e-06
Identity = 29/42 (69.05%), Postives = 37/42 (88.10%), Query Frame = 0

Query: 87  RAGGGKMRSVIPKKRKLVKTMMYHSIKDFVISLFRTPPSAGV 129
           R GG K++SVIPK+RKLVKTM+YHS+KDF+ISLFR  PS+ +
Sbjct: 32  RVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLFR--PSSDI 71

BLAST of CcUC08G150240 vs. ExPASy TrEMBL
Match: A0A5D3D590 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold481G00190 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-05
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 0

Query: 70  PAVAEASNRAVQMAIGYRAGGGKMRSVIPKKRKLVKTMMYHSIKDFVISLFRTPP 125
           P V E +  A++ AI YR G G M+SVIPKKRKLVK MMY  IK+++ SLFR  P
Sbjct: 11  PVVPEKAQTALEPAIVYR-GAGNMKSVIPKKRKLVKRMMYDCIKEWIKSLFRPTP 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN47677.12.0e-2264.65hypothetical protein Csa_018325 [Cucumis sativus][more]
KAE8647204.12.6e-1467.14hypothetical protein Csa_019006, partial [Cucumis sativus][more]
KAG6578935.11.1e-1247.01hypothetical protein SDJN03_23383, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6578934.11.2e-1148.51hypothetical protein SDJN03_23382, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602134.15.1e-1038.76hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KH019.8e-2364.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374700 PE=4 SV=1[more]
A0A6J1CJW36.8e-0869.23uncharacterized protein LOC111011963 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A0A0KDQ78.3e-0669.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1[more]
A0A5D3D5901.1e-0558.18Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC08G150240.1CcUC08G150240.1mRNA