CcUC08G149410 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC08G149410
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionProtein Ycf2
LocationCicolChr08: 16614714 .. 16616668 (+)
RNA-Seq ExpressionCcUC08G149410
SyntenyCcUC08G149410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTGCTTCTGGTGGCAACATGCTATGGATGGCGGTCCCGCTTATGGGGTCAAATTAATACGTTCGAAGAAGAAAGATTGGAATAATTCCCTGAAGTATTTCCCATATAATGGGTTCTTTTTCCCAAATTTTTTTTCTTAGCAGCTCCTATGTTCGAAGCAAAATGTTCCATTCTTTCTTCTTCAAACGTATTGATTTGATCCCATAAGCGGGACCGCCACCTTATAGCATGTTGCCACCAGAGAACCCAAATTTTCTTTTAAAATTGTTATGATATTTGTCTTTGTTTAAAGTTTGTAATAAATACCATAGAAATTTGGTATTTAACATTTAAATTCTATGGGATTTTATTTATTAGTAGTGTTGTGTAGATAAATTTGAAAAAATAAGTTATAATTTGATAACCCAACCCGATCTATGTACACCTCTACTATTTTTGGTACTTCATTTACCTAATTTTTCTTTTACCCTTATCTTTTGTTTACTTTTTTTCTCTTGATATTTTCAGTTATCTTTTCTTATTTAGATTTTCTTGATTTAAAAAACAATATAATATTATATGAGTTTCTATTTTTATTTTTTTTTTATTTTAGTTAGTTAAAAATATTTTTAAATATAATAAAATGAGCGAAAATATTTATAAATATAGCGGTGATGATAGACAATAAAATTTTATTATATTTATAAATATTTTTAGTAAGTTTAGGACTTAAAATAATTACTGTTTTTCCAAAAAACTATCTAAATCTTGTTGGCTAGGATTTTAGACCTTCACTTTTTTAATTTATCAGTTATAGAGTCTTACGACTATTTTAGTCATTTAATATTTATTAATTAATAATCTTGAAAATCACTTTGATATTTTTCTAATTTCGAAATATTTTTTCTACTTTTCGAAATGAAATCTCACATTTTGCTATTTCTCTCGAAAGTCCATTCTTCAATGGGCCTATTCTGCGTCTAATTAAATCTGAGTTCAAATATTATTACCTAATTGGACTAAATTAGTTCATTCAATTAAACAAACAGATCGACAACACACTACGTTATCGAACTTTGCCATTTTTCTTCGATTTATTAATATGAGACACATGCCAATTTGCAATTAATCTTAGATTTAAAAACATATAATTTGTGATTAATTTGAGAAATGACATAACAATTTACAATTAGTAAAAATTTCTCATTCAACCCGGTCATTGCCAGTTTTTAATTAAAGAATTACTTAGACATATAATCTAATTTTGCGTTTAATAGACTATTAAAATTTTAGTTTTGTGTCTTAGCTTGTAGGTTCGTAAAACCATTTTAAAAATGTGAAATTGGTTAAAAAACTAGGGTACTACTTGGGGGATACACTTATCTACATGCATCTCTTCTCATCACTCACATAAAAAAGAATTAAATTTTTTTTAAAAAAAATAAAAAAAAATTTGTTGCATGATAAATTATGATTGAAAAATTTAATAGAATACTAAAGTTAAATATAGTCTAAGATATACTTAAGTATTAATTAAAAAACTATTCAATCCAGAATAAAAATCATACATTTATTAGATACAACATCGAAAATGGAAAGACCAATTAGACCATTTTTAAAATTAGATTTGGCCGACATAAAATTTAAGAAACAAAAAATGTCTAAAATGATTTTTTTTTTTTTTTTTTTTGAAAGCAACTTTTTATTTGTTATTAAAGCTGTCATTTTCTAAAATAAAAAAAAGAAGGAAATTACTAAAATGTGAGAATTTGGATTTGCCAGGTCAGCGGAACAGCATCCTCGACTGTCAGCCGTTCATACAAATATCGGTTTGTTTCTAGCTTTGTCGTCTCGTAATCGATTGATTAGATTTGGATTTTGTTTTCCGGACGACGTGTCGGCCGCCGATGTGCCACCAACATCCCAAACGCAGCCGCAACATTTTATTTCTAACCTTAAATTTCAATTCTAA

mRNA sequence

ATGTTCTGCTTCTGGTGGCAACATGCTATGGATGGCGGTCCCGCTTATGGGGTCAAATTAATACGTTCGAAGAAGAAAGATTGGAATAATTCCCTGAAGTATTTCCCATATAATGGGTCAGCGGAACAGCATCCTCGACTGTCAGCCGTTCATACAAATATCGGTTTGTTTCTAGCTTTGTCGTCTCGTAATCGATTGATTAGATTTGGATTTTGTTTTCCGGACGACGTGTCGGCCGCCGATGTGCCACCAACATCCCAAACGCAGCCGCAACATTTTATTTCTAACCTTAAATTTCAATTCTAA

Coding sequence (CDS)

ATGTTCTGCTTCTGGTGGCAACATGCTATGGATGGCGGTCCCGCTTATGGGGTCAAATTAATACGTTCGAAGAAGAAAGATTGGAATAATTCCCTGAAGTATTTCCCATATAATGGGTCAGCGGAACAGCATCCTCGACTGTCAGCCGTTCATACAAATATCGGTTTGTTTCTAGCTTTGTCGTCTCGTAATCGATTGATTAGATTTGGATTTTGTTTTCCGGACGACGTGTCGGCCGCCGATGTGCCACCAACATCCCAAACGCAGCCGCAACATTTTATTTCTAACCTTAAATTTCAATTCTAA

Protein sequence

MFCFWWQHAMDGGPAYGVKLIRSKKKDWNNSLKYFPYNGSAEQHPRLSAVHTNIGLFLALSSRNRLIRFGFCFPDDVSAADVPPTSQTQPQHFISNLKFQF
Homology
[Close]
BLAST of CcUC08G149410 vs. ExPASy Swiss-Prot
Match: Q2QD30 (Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.5e-04
Identity = 20/27 (74.07%), Postives = 21/27 (77.78%), Query Frame = 0 

Query: 6    WQHAMDGGPAYGVKLIRSKKKDWNNSL 33
            W  A  GGPAYGVK IRSKKKDWN +L
Sbjct: 1134 WGSASGGGPAYGVKSIRSKKKDWNINL 1160

The following BLAST results are available for this feature:
BLAST of CcUC08G149410 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC08G149410 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q2QD301.5e-0474.07Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1[more]
BLAST of CcUC08G149410 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CcUC08G149410 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC08G149410.1CcUC08G149410.1mRNA