CcUC08G149030 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC08G149030
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Ribosomal L18p/L5e family protein
Location	CicolChr08: 14765664 .. 14766044 (-)
RNA-Seq Expression	CcUC08G149030
Synteny	CcUC08G149030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCATAAACCAGAACCACCTCCTACGCCTGGTTCTTTCCTGCCGGAAAATCACCGCCCAGGTTACCAATCCAGCCACCTCCTCCATCATTGCCATGGCATCCTCCTCCGAGCAGGAATTCGTCGCCTATTACCGCTCCAAACTCCACCGCTTTCCTCGATCCAACAACTTCTGGGACTCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTTGGCCATCGTTTGAAGGAGATCGGCGTCTCCGATGTTCGGATTGATCTTGCTGAAGAGCTCTCCCGCCCTGTTTACTATCGGAAGATGGTTCTGCCGCTCTTCGATTCTGTTCAGCGCTCCGGCGTCGCCGTCGATGGCGCTGAGAAGCTCGGAACAGGTGCAATCTAG

mRNA sequence

ATGTCCATAAACCAGAACCACCTCCTACGCCTGGTTCTTTCCTGCCGGAAAATCACCGCCCAGGTTACCAATCCAGCCACCTCCTCCATCATTGCCATGGCATCCTCCTCCGAGCAGGAATTCGTCGCCTATTACCGCTCCAAACTCCACCGCTTTCCTCGATCCAACAACTTCTGGGACTCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTTGGCCATCGTTTGAAGGAGATCGGCGTCTCCGATGTTCGGATTGATCTTGCTGAAGAGCTCTCCCGCCCTGTTTACTATCGGAAGATGGTTCTGCCGCTCTTCGATTCTGTTCAGCGCTCCGGCGTCGCCGTCGATGGCGCTGAGAAGCTCGGAACAGGTGCAATCTAG

Coding sequence (CDS)

ATGTCCATAAACCAGAACCACCTCCTACGCCTGGTTCTTTCCTGCCGGAAAATCACCGCCCAGGTTACCAATCCAGCCACCTCCTCCATCATTGCCATGGCATCCTCCTCCGAGCAGGAATTCGTCGCCTATTACCGCTCCAAACTCCACCGCTTTCCTCGATCCAACAACTTCTGGGACTCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTTGGCCATCGTTTGAAGGAGATCGGCGTCTCCGATGTTCGGATTGATCTTGCTGAAGAGCTCTCCCGCCCTGTTTACTATCGGAAGATGGTTCTGCCGCTCTTCGATTCTGTTCAGCGCTCCGGCGTCGCCGTCGATGGCGCTGAGAAGCTCGGAACAGGTGCAATCTAG

Protein sequence

MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVQRSGVAVDGAEKLGTGAI

Homology

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BLAST of CcUC08G149030 vs. NCBI nr
Match: XP_004140885.1 (uncharacterized protein LOC101204363 [Cucumis sativus])

HSP 1 Score: 243.8 bits (621), Expect = 7.9e-61
Identity = 124/126 (98.41%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVQRSGVAVDGAEK 120
           SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRP+YYRKMVLPLFDSVQRSGVAVDGAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTGAI 127
           LGTG+I
Sbjct: 121 LGTGSI 126

[Close]

BLAST of CcUC08G149030 vs. NCBI nr
Match: KAE8646622.1 (hypothetical protein Csa_005380 [Cucumis sativus])

HSP 1 Score: 240.0 bits (611), Expect = 1.1e-59
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVQRSGVAVDGAEK 120
           SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRP+YYRKMVLPLFDSVQRSGVAVDGAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGT 124
           LGT
Sbjct: 121 LGT 123

[Close]

BLAST of CcUC08G149030 vs. NCBI nr
Match: XP_038884098.1 (uncharacterized protein LOC120075027 isoform X5 [Benincasa hispida])

HSP 1 Score: 237.3 bits (604), Expect = 7.4e-59
Identity = 120/124 (96.77%), Postives = 123/124 (99.19%), Query Frame = 0


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MSI+QNHLLRLVLSCRKITAQVTNPATSSI+AMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSISQNHLLRLVLSCRKITAQVTNPATSSIVAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVQRSGVAVDGAEK 120
           SKVASRVGEKLGHRLKEIGVSDVRIDLAEE SRP+YYRKMVLPLFDSVQRSGVAVDGAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEEFSRPLYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTG 125
           LGTG
Sbjct: 121 LGTG 124

[Close]

BLAST of CcUC08G149030 vs. NCBI nr
Match: XP_038884095.1 (uncharacterized protein LOC120075027 isoform X2 [Benincasa hispida])

HSP 1 Score: 237.3 bits (604), Expect = 7.4e-59
Identity = 120/124 (96.77%), Postives = 123/124 (99.19%), Query Frame = 0


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MSI+QNHLLRLVLSCRKITAQVTNPATSSI+AMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSISQNHLLRLVLSCRKITAQVTNPATSSIVAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVQRSGVAVDGAEK 120
           SKVASRVGEKLGHRLKEIGVSDVRIDLAEE SRP+YYRKMVLPLFDSVQRSGVAVDGAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEEFSRPLYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTG 125
           LGTG
Sbjct: 121 LGTG 124

[Close]

BLAST of CcUC08G149030 vs. NCBI nr
Match: XP_038884096.1 (uncharacterized protein LOC120075027 isoform X3 [Benincasa hispida])

HSP 1 Score: 237.3 bits (604), Expect = 7.4e-59
Identity = 120/124 (96.77%), Postives = 123/124 (99.19%), Query Frame = 0


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MSI+QNHLLRLVLSCRKITAQVTNPATSSI+AMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSISQNHLLRLVLSCRKITAQVTNPATSSIVAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVQRSGVAVDGAEK 120
           SKVASRVGEKLGHRLKEIGVSDVRIDLAEE SRP+YYRKMVLPLFDSVQRSGVAVDGAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEEFSRPLYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTG 125
           LGTG
Sbjct: 121 LGTG 124

[Close]

BLAST of CcUC08G149030 vs. ExPASy TrEMBL
Match: A0A0A0KE39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G042360 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 3.8e-61
Identity = 124/126 (98.41%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVQRSGVAVDGAEK 120
           SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRP+YYRKMVLPLFDSVQRSGVAVDGAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTGAI 127
           LGTG+I
Sbjct: 121 LGTGSI 126

[Close]

BLAST of CcUC08G149030 vs. ExPASy TrEMBL
Match: A0A5D3BWW4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00630 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 6.1e-59
Identity = 120/126 (95.24%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVQRSGVAVDGAEK 120
           SKVASRVG KLGHRLKEIGVSDVRIDLAEELSRP+YYRKMVLPLFDSVQRSG+AVDG EK
Sbjct: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120

Query: 121 LGTGAI 127
           LG G+I
Sbjct: 121 LGKGSI 126

[Close]

BLAST of CcUC08G149030 vs. ExPASy TrEMBL
Match: A0A1S4DVU4 (uncharacterized protein LOC103488672 OS=Cucumis melo OX=3656 GN=LOC103488672 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 6.1e-59
Identity = 120/126 (95.24%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVQRSGVAVDGAEK 120
           SKVASRVG KLGHRLKEIGVSDVRIDLAEELSRP+YYRKMVLPLFDSVQRSG+AVDG EK
Sbjct: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120

Query: 121 LGTGAI 127
           LG G+I
Sbjct: 121 LGKGSI 126

[Close]

BLAST of CcUC08G149030 vs. ExPASy TrEMBL
Match: A0A6J1JZ79 (uncharacterized protein LOC111488745 OS=Cucurbita maxima OX=3661 GN=LOC111488745 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.4e-57
Identity = 117/126 (92.86%), Postives = 122/126 (96.83%), Query Frame = 0


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MSINQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAYY SKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVQRSGVAVDGAEK 120
           SK+ASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYR  VLPLFDSV+RSGVAV+GAEK
Sbjct: 61  SKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNRVLPLFDSVRRSGVAVNGAEK 120

Query: 121 LGTGAI 127
           LG+GAI
Sbjct: 121 LGSGAI 126

[Close]

BLAST of CcUC08G149030 vs. ExPASy TrEMBL
Match: A0A6J1EVG7 (uncharacterized protein LOC111436340 OS=Cucurbita moschata OX=3662 GN=LOC111436340 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.4e-55
Identity = 116/126 (92.06%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MSINQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAY RSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVQRSGVAVDGAEK 120
           SK+ASRVGEKLGHRLKEIGVSDVRIDLAEELSRPV YR  VLPLFDSV+RSGVAV+GAEK
Sbjct: 61  SKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNRVLPLFDSVRRSGVAVNGAEK 120

Query: 121 LGTGAI 127
           LG+GAI
Sbjct: 121 LGSGAI 126

[Close]

BLAST of CcUC08G149030 vs. TAIR 10
Match: AT2G43310.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 166.0 bits (419), Expect = 1.9e-41
Identity = 82/118 (69.49%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 4   NQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKV 63
           +++HLL+LVLSCRKITAQVT P +S+IIAMASSSEQEF+A  R+ L+RFP SN+FWDSK 
Sbjct: 5   HRHHLLQLVLSCRKITAQVTQPGSSTIIAMASSSEQEFLAKSRANLYRFPHSNHFWDSKT 64

Query: 64  ASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVQRSGVAVDGAEKL 122
           ASRVGEKLG RL+E+GV  V ID  EE+SRP+++RK VLPLFDSV+R+G+ VDG E+L
Sbjct: 65  ASRVGEKLGLRLRELGVDVVSIDADEEISRPIHHRKRVLPLFDSVRRTGIRVDGTEQL 122

The following BLAST results are available for this feature:

BLAST of CcUC08G149030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140885.1	7.9e-61	98.41	uncharacterized protein LOC101204363 [Cucumis sativus]	[more]
KAE8646622.1	1.1e-59	99.19	hypothetical protein Csa_005380 [Cucumis sativus]	[more]
XP_038884098.1	7.4e-59	96.77	uncharacterized protein LOC120075027 isoform X5 [Benincasa hispida]	[more]
XP_038884095.1	7.4e-59	96.77	uncharacterized protein LOC120075027 isoform X2 [Benincasa hispida]	[more]
XP_038884096.1	7.4e-59	96.77	uncharacterized protein LOC120075027 isoform X3 [Benincasa hispida]	[more]

BLAST of CcUC08G149030 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC08G149030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KE39	3.8e-61	98.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G042360 PE=4 SV=1	[more]
A0A5D3BWW4	6.1e-59	95.24	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4DVU4	6.1e-59	95.24	uncharacterized protein LOC103488672 OS=Cucumis melo OX=3656 GN=LOC103488672 PE=...	[more]
A0A6J1JZ79	4.4e-57	92.86	uncharacterized protein LOC111488745 OS=Cucurbita maxima OX=3661 GN=LOC111488745...	[more]
A0A6J1EVG7	1.4e-55	92.06	uncharacterized protein LOC111436340 OS=Cucurbita moschata OX=3662 GN=LOC1114363...	[more]

BLAST of CcUC08G149030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43310.1	1.9e-41	69.49	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.420.100		coord: 3..114 e-value: 1.4E-8 score: 37.3
None	No IPR available	PANTHER	PTHR12899:SF14	F14B2.25/F14B2.25	coord: 4..123
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 5..89
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 4..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC08G149030.1	CcUC08G149030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome