CcUC08G148980 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC08G148980
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionATP-dependent DNA helicase
LocationCicolChr08: 14594675 .. 14595028 (-)
RNA-Seq ExpressionCcUC08G148980
SyntenyCcUC08G148980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTTTGGTTGAGTCATACCTTTGGCCGCAAATGGAAAAAATATAGCTAGTTACAAATATGAGAGCTCAGAATGACAACTAATTTGCATAATATTTATTAAAGATTGGCAACAATACAGATATATATAGAAGAAGACTATATTTATCTCCCACATGATATTGTTGTAACAGATGAAAATGACGATGTGGTATTGAGATTATTCAATATTGTTTATCCTCATCTTGAGAAAAATGCTACATCGCCAGAGTATATAACAAGTAAAGCAATTCTTTCTACCACAAATGAGTATGTTGATCAAATGAAAATGATTCATCTGTTTCTAGGAAAAGTAGAAGAATTCAGCAATTGA

mRNA sequence

ATGAAAATATATATAGAAGAAGACTATATTTATCTCCCACATGATATTGTTGTAACAGATGAAAATGACGATGTGGTATTGAGATTATTCAATATTGTTTATCCTCATCTTGAGAAAAATGCTACATCGCCAGAGTATATAACAAGTAAAGCAATTCTTTCTACCACAAATGAGTATGTTGATCAAATGAAAATGATTCATCTGTTTCTAGGAAAAGTAGAAGAATTCAGCAATTGA

Coding sequence (CDS)

ATGAAAATATATATAGAAGAAGACTATATTTATCTCCCACATGATATTGTTGTAACAGATGAAAATGACGATGTGGTATTGAGATTATTCAATATTGTTTATCCTCATCTTGAGAAAAATGCTACATCGCCAGAGTATATAACAAGTAAAGCAATTCTTTCTACCACAAATGAGTATGTTGATCAAATGAAAATGATTCATCTGTTTCTAGGAAAAGTAGAAGAATTCAGCAATTGA

Protein sequence

MKIYIEEDYIYLPHDIVVTDENDDVVLRLFNIVYPHLEKNATSPEYITSKAILSTTNEYVDQMKMIHLFLGKVEEFSN
Homology
[Close]
BLAST of CcUC08G148980 vs. NCBI nr
Match: XP_022155233.1 (ATP-dependent DNA helicase PIF1-like [Momordica charantia])

HSP 1 Score: 90.5 bits (223), Expect = 6.9e-15
Identity = 48/75 (64.00%), Postives = 59/75 (78.67%), Query Frame = 0 

Query: 5   IEEDYIYLPHDIVVTDE-NDDVVLRLFNIVYPHLEKNATSPEYITSKAILSTTNEYVDQM 64
           I EDY+ LP DI + DE ++D VL+L NIVYP L +NA S EYIT++AILSTTNEYVD++
Sbjct: 158 IVEDYVRLPKDIAIIDEGHEDSVLKLLNIVYPDLPQNAMSAEYITNRAILSTTNEYVDEI 217

Query: 65  --KMIHLFLGKVEEF 77
             KMI LFLG +EEF
Sbjct: 218 NNKMIRLFLGNIEEF 232

[Close]
BLAST of CcUC08G148980 vs. NCBI nr
Match: XP_022159149.1 (ATP-dependent DNA helicase PIF1-like [Momordica charantia])

HSP 1 Score: 87.8 bits (216), Expect = 4.5e-14
Identity = 47/75 (62.67%), Postives = 58/75 (77.33%), Query Frame = 0 

Query: 5  IEEDYIYLPHDIVVTDE-NDDVVLRLFNIVYPHLEKNATSPEYITSKAILSTTNEYVDQM 64
          I EDY+ LP DI + DE ++D VL+L NIVYP L +NA S EYIT++AILSTTNEYVD++
Sbjct: 24 IVEDYVRLPKDIAIIDEGHEDSVLKLLNIVYPDLPQNAMSAEYITNRAILSTTNEYVDEI 83

Query: 65 --KMIHLFLGKVEEF 77
            KMI LF G +EEF
Sbjct: 84 NNKMIRLFPGNIEEF 98

[Close]
BLAST of CcUC08G148980 vs. NCBI nr
Match: XP_022152307.1 (ATP-dependent DNA helicase PIF1-like [Momordica charantia])

HSP 1 Score: 87.4 bits (215), Expect = 5.8e-14
Identity = 45/75 (60.00%), Postives = 58/75 (77.33%), Query Frame = 0 

Query: 5   IEEDYIYLPHDIVVTDENDD-VVLRLFNIVYPHLEKNATSPEYITSKAILSTTNEYVDQM 64
           +E+DYI L  DI +T END+  +++L N+VYP LE+NATS EY+T++ ILSTTNEYVDQ+
Sbjct: 96  VEDDYICLTDDITITGENDEGAIMKLLNVVYPDLEQNATSSEYMTNRVILSTTNEYVDQI 155

Query: 65  --KMIHLFLGKVEEF 77
             KMI LF GK  EF
Sbjct: 156 NEKMIQLFPGKFFEF 170

[Close]
BLAST of CcUC08G148980 vs. NCBI nr
Match: XP_031737538.1 (uncharacterized protein LOC116402430 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 4.9e-13
Identity = 44/74 (59.46%), Postives = 59/74 (79.73%), Query Frame = 0 

Query: 6   EEDYIYLPHDIVVTDEN-DDVVLRLFNIVYPHLEKNATSPEYITSKAILSTTNEYVDQM- 65
           E+DYI LP +I+VT  N +D +L+L NIVYP L+ + TS EY+T++AILSTTNEYVDQ+ 
Sbjct: 97  EDDYICLPANIIVTGANEEDSILKLLNIVYPDLKTHTTSAEYMTNRAILSTTNEYVDQIN 156

Query: 66  -KMIHLFLGKVEEF 77
            +MI +F GK+EEF
Sbjct: 157 ERMIEMFPGKMEEF 170

[Close]
BLAST of CcUC08G148980 vs. NCBI nr
Match: XP_004136446.2 (ATP-dependent DNA helicase PIF1-like [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 1.9e-09
Identity = 40/67 (59.70%), Postives = 51/67 (76.12%), Query Frame = 0 

Query: 6   EEDYIYLPHDIVVTDEN-DDVVLRLFNIVYPHLEKNATSPEYITSKAILSTTNEYVDQM- 65
           E+DYI LP +I VT  N +D +L+L NIVY  L+ +ATS  Y+TS+AILSTTNEYVDQ+ 
Sbjct: 65  EDDYICLPSNITVTGANEEDSILKLLNIVYADLKTHATSANYMTSRAILSTTNEYVDQIS 124

Query: 66  -KMIHLF 70
            +MI LF
Sbjct: 125 ERMIELF 131

[Close]
BLAST of CcUC08G148980 vs. ExPASy TrEMBL
Match: A0A6J1DMF2 (ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111022374 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.3e-15
Identity = 48/75 (64.00%), Postives = 59/75 (78.67%), Query Frame = 0 

Query: 5   IEEDYIYLPHDIVVTDE-NDDVVLRLFNIVYPHLEKNATSPEYITSKAILSTTNEYVDQM 64
           I EDY+ LP DI + DE ++D VL+L NIVYP L +NA S EYIT++AILSTTNEYVD++
Sbjct: 158 IVEDYVRLPKDIAIIDEGHEDSVLKLLNIVYPDLPQNAMSAEYITNRAILSTTNEYVDEI 217

Query: 65  --KMIHLFLGKVEEF 77
             KMI LFLG +EEF
Sbjct: 218 NNKMIRLFLGNIEEF 232

[Close]
BLAST of CcUC08G148980 vs. ExPASy TrEMBL
Match: A0A6J1E1J0 (ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111025574 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.2e-14
Identity = 47/75 (62.67%), Postives = 58/75 (77.33%), Query Frame = 0 

Query: 5  IEEDYIYLPHDIVVTDE-NDDVVLRLFNIVYPHLEKNATSPEYITSKAILSTTNEYVDQM 64
          I EDY+ LP DI + DE ++D VL+L NIVYP L +NA S EYIT++AILSTTNEYVD++
Sbjct: 24 IVEDYVRLPKDIAIIDEGHEDSVLKLLNIVYPDLPQNAMSAEYITNRAILSTTNEYVDEI 83

Query: 65 --KMIHLFLGKVEEF 77
            KMI LF G +EEF
Sbjct: 84 NNKMIRLFPGNIEEF 98

[Close]
BLAST of CcUC08G148980 vs. ExPASy TrEMBL
Match: A0A6J1DFU4 (ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111020055 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.8e-14
Identity = 45/75 (60.00%), Postives = 58/75 (77.33%), Query Frame = 0 

Query: 5   IEEDYIYLPHDIVVTDENDD-VVLRLFNIVYPHLEKNATSPEYITSKAILSTTNEYVDQM 64
           +E+DYI L  DI +T END+  +++L N+VYP LE+NATS EY+T++ ILSTTNEYVDQ+
Sbjct: 96  VEDDYICLTDDITITGENDEGAIMKLLNVVYPDLEQNATSSEYMTNRVILSTTNEYVDQI 155

Query: 65  --KMIHLFLGKVEEF 77
             KMI LF GK  EF
Sbjct: 156 NEKMIQLFPGKFFEF 170

[Close]
BLAST of CcUC08G148980 vs. ExPASy TrEMBL
Match: A0A5B7A9C3 (ATP-dependent DNA helicase OS=Davidia involucrata OX=16924 GN=Din_021512 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.6e-07
Identity = 34/75 (45.33%), Postives = 52/75 (69.33%), Query Frame = 0 

Query: 7    EDYIYLPHDIVVTDENDDV-VLRLFNIVYPHLEKNATSPEYITSKAILSTTNEYVDQM-- 66
            +D I +P  +V+  END+V   +L + +YP LE+NA S EY+T +AIL+T NEYVD++  
Sbjct: 1238 QDMILIPDQMVIKYENDEVSEQKLIDDIYPSLEQNAKSAEYMTKRAILATKNEYVDKLNE 1297

Query: 67   KMIHLFLGKVEEFSN 79
            K+I +F G V  F++
Sbjct: 1298 KLIEMFPGDVRTFNS 1312

[Close]
BLAST of CcUC08G148980 vs. ExPASy TrEMBL
Match: A0A5B7A5M4 (ATP-dependent DNA helicase (Fragment) OS=Davidia involucrata OX=16924 GN=Din_021511 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.6e-07
Identity = 34/75 (45.33%), Postives = 52/75 (69.33%), Query Frame = 0 

Query: 7   EDYIYLPHDIVVTDENDDV-VLRLFNIVYPHLEKNATSPEYITSKAILSTTNEYVDQM-- 66
           +D I +P  +V+  END+V   +L + +YP LE+NA S EY+T +AIL+T NEYVD++  
Sbjct: 212 QDMILIPDQMVIKYENDEVSEQKLIDDIYPFLEQNAKSAEYMTKRAILATKNEYVDKLNE 271

Query: 67  KMIHLFLGKVEEFSN 79
           K+I +F G V  F++
Sbjct: 272 KLIEMFPGDVRTFNS 286

The following BLAST results are available for this feature:
BLAST of CcUC08G148980 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022155233.16.9e-1564.00ATP-dependent DNA helicase PIF1-like [Momordica charantia][more]
XP_022159149.14.5e-1462.67ATP-dependent DNA helicase PIF1-like [Momordica charantia][more]
XP_022152307.15.8e-1460.00ATP-dependent DNA helicase PIF1-like [Momordica charantia][more]
XP_031737538.14.9e-1359.46uncharacterized protein LOC116402430 [Cucumis sativus][more]
XP_004136446.21.9e-0959.70ATP-dependent DNA helicase PIF1-like [Cucumis sativus][more]
BLAST of CcUC08G148980 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC08G148980 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DMF23.3e-1564.00ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111022374 PE=3 S... [more]
A0A6J1E1J02.2e-1462.67ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111025574 PE=3 S... [more]
A0A6J1DFU42.8e-1460.00ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111020055 PE=3 S... [more]
A0A5B7A9C32.6e-0745.33ATP-dependent DNA helicase OS=Davidia involucrata OX=16924 GN=Din_021512 PE=3 SV... [more]
A0A5B7A5M42.6e-0745.33ATP-dependent DNA helicase (Fragment) OS=Davidia involucrata OX=16924 GN=Din_021... [more]
BLAST of CcUC08G148980 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC08G148980.1CcUC08G148980.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032508 DNA duplex unwinding
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
biological_process GO:0000723 telomere maintenance
molecular_function GO:0005524 ATP binding
molecular_function GO:0016887 ATP hydrolysis activity
molecular_function GO:0003678 DNA helicase activity