CcUC08G148490 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC08G148490
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Pectin lyase-like superfamily protein
Location	CicolChr08: 12101292 .. 12102184 (+)
RNA-Seq Expression	CcUC08G148490
Synteny	CcUC08G148490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGCATTCTTGATGGTCAAGGAACTAGCTTATGGGCTTGTAAAAATGCTACAAAGACTTGCCCAACAGGTGCCTTGGTATGTAAAATAATTAAATTAATCAATCAACAAGACAATCGTTTACTAAGTTTATAATTATTTGTATTCTCTTAAGACAAGTTTATGTTTTTATTTTAGAAACATTACGTACAAGTGGCCATGTTCTTACCTAGAAAACTATTGATTGTACCCATAACATGCATTTACATTTCTCTTGCATTAATTAATTTTCTTTTTACTTTTATGTCCAGACGCTCAAATTTTCCTATTGAAAGAATGTAGTGATTAGTGCATTAACATCACTCAAAAGTCAAATGTTCCACATTGTGATCAATCATTGCCAAAATGCGAAAATGGAAGTGTAGCAAAGGATGCACAAGAGGCTGGGGTGCAAAATATTACTATGAAAAATGCTTTATTTTCACGCACTCAGAACGGAGTGAGAATCAAAGCATGGGCTAGGCCAAGCAATGGATTTGTTAGGAGCGTTCTCTTCCAAAACATTGTAATGGACAATGTGCAGAACCAATTCTTATTGATCAAAACTATTGTCCAAGCCATACAGGATGTCCGGACAAGGTATGAACTTGATAAATTAATATAACTTCTCTAGTTAGGGGCTACTTTTTCTATTTAACAAAAGTTATTGTTGTTGGTATGGAACAAGCTTCAGGAATTAAAATTAGCGACGTGACATACCAAAACATTCGTGGAACATCAGCTACAAAAGTTGCAATAAAATTTGATTTTAGTCCATCAAATCCGTGTAATCGAATAAAGTTGCAGCACGTAAAGCTTAGTTATATGAATCAAATAGCCCAAGCAACGTGCAACAATGTTGGAGGGATTGCTACA

mRNA sequence

GTGGCATTCTTGATGGTCAAGGAACTAGCTTATGGGCTTGTAAAAATGCTACAAAGACTTGCCCAACAGTGCATTAACATCACTCAAAAGTCAAATGTTCCACATTGTGATCAATCATTGCCAAAATGCGAAAATGGAAGTGTAGCAAAGGATGCACAAGAGGCTGGGGTGCAAAATATTACTATGAAAAATGCTTTATTTTCACGCACTCAGAACGGAGTGAGAATCAAAGCATGGGCTAGGCCAAGCAATGGATTTGTTAGGAGCGTTCTCTTCCAAAACATTGTAATGGACAATGTGCAGAACCAATTCTTATTGATCAAAACTATTGTCCAAGCCATACAGGATGTCCGGACAAGGGGCTACTTTTTCTATTTAACAAAAGTTATTGTTGTTGGTATGGAACAAGCTTCAGGAATTAAAATTAGCGACGTGACATACCAAAACATTCGTGGAACATCAGCTACAAAAGTTGCAATAAAATTTGATTTTAGTCCATCAAATCCGTGTAATCGAATAAAGTTGCAGCACGTAAAGCTTAGTTATATGAATCAAATAGCCCAAGCAACGTGCAACAATGTTGGAGGGATTGCTACA

Coding sequence (CDS)

GTGGCATTCTTGATGGTCAAGGAACTAGCTTATGGGCTTGTAAAAATGCTACAAAGACTTGCCCAACAGTGCATTAACATCACTCAAAAGTCAAATGTTCCACATTGTGATCAATCATTGCCAAAATGCGAAAATGGAAGTGTAGCAAAGGATGCACAAGAGGCTGGGGTGCAAAATATTACTATGAAAAATGCTTTATTTTCACGCACTCAGAACGGAGTGAGAATCAAAGCATGGGCTAGGCCAAGCAATGGATTTGTTAGGAGCGTTCTCTTCCAAAACATTGTAATGGACAATGTGCAGAACCAATTCTTATTGATCAAAACTATTGTCCAAGCCATACAGGATGTCCGGACAAGGGGCTACTTTTTCTATTTAACAAAAGTTATTGTTGTTGGTATGGAACAAGCTTCAGGAATTAAAATTAGCGACGTGACATACCAAAACATTCGTGGAACATCAGCTACAAAAGTTGCAATAAAATTTGATTTTAGTCCATCAAATCCGTGTAATCGAATAAAGTTGCAGCACGTAAAGCTTAGTTATATGAATCAAATAGCCCAAGCAACGTGCAACAATGTTGGAGGGATTGCTACA

Protein sequence

VAFLMVKELAYGLVKMLQRLAQQCINITQKSNVPHCDQSLPKCENGSVAKDAQEAGVQNITMKNALFSRTQNGVRIKAWARPSNGFVRSVLFQNIVMDNVQNQFLLIKTIVQAIQDVRTRGYFFYLTKVIVVGMEQASGIKISDVTYQNIRGTSATKVAIKFDFSPSNPCNRIKLQHVKLSYMNQIAQATCNNVGGIAT

Homology

[Close]

BLAST of CcUC08G148490 vs. NCBI nr
Match: XP_038888748.1 (polygalacturonase-like, partial [Benincasa hispida])

HSP 1 Score: 191.8 bits (486), Expect = 5.6e-45
Identity = 98/154 (63.64%), Postives = 120/154 (77.92%), Query Frame = 0


Query: 46  GSVAKDAQEAGVQNITMKNALFSRTQNGVRIKAWARPSNGFVRSVLFQNIVMDNVQNQFL 105
           GS+AKD QEAGVQN+T+KNALFSRTQNGVRIKAWAR SNGFV++++F+NIVMDNV N  L
Sbjct: 231 GSLAKDQQEAGVQNVTVKNALFSRTQNGVRIKAWARASNGFVKNIIFKNIVMDNVYNPIL 290

Query: 106 LIKTIVQAIQDVRTRGYFFYLTKVIVVGMEQASGIKISDVTYQNIRGTSATKVAIKFDFS 165
           + +      ++                  ++ASGIKISDVTYQNI GTSATKVA+KFD S
Sbjct: 291 IDQNYCPRHKEC----------------PDKASGIKISDVTYQNIHGTSATKVAVKFDCS 350

Query: 166 PSNPCNRIKLQHVKLSYMNQIAQATCNNVGGIAT 200
           P+NPCN+I+L+ VKLSYMNQ+AQATC++ GGIAT
Sbjct: 351 PTNPCNQIRLEDVKLSYMNQMAQATCSHAGGIAT 368

[Close]

BLAST of CcUC08G148490 vs. NCBI nr
Match: XP_011652823.2 (polygalacturonase [Cucumis sativus] >KAE8650851.1 hypothetical protein Csa_001451 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 3.1e-43
Identity = 95/153 (62.09%), Postives = 116/153 (75.82%), Query Frame = 0


Query: 46  GSVAKDAQEAGVQNITMKNALFSRTQNGVRIKAWARPSNGFVRSVLFQNIVMDNVQNQFL 105
           GS+AKD QE GVQN+T+KN +FSRTQNGVRIKAW +PSNGF R++LFQ+IVMDNVQN  +
Sbjct: 253 GSLAKDLQEDGVQNVTVKNVVFSRTQNGVRIKAWGKPSNGFARNILFQHIVMDNVQNPIV 312

Query: 106 LIKTIVQAIQDVRTRGYFFYLTKVIVVGMEQASGIKISDVTYQNIRGTSATKVAIKFDFS 165
           + +    + +                   E+ASG+KI+DVTYQ+I GTSATKVA+KFD S
Sbjct: 313 IDQNYCPSHKGC----------------PEKASGVKINDVTYQDIHGTSATKVAVKFDCS 372

Query: 166 PSNPCNRIKLQHVKLSYMNQIAQATCNNVGGIA 199
           P NPC RIKL++VKL+YMNQ AQATCNNVGGIA
Sbjct: 373 PINPCVRIKLENVKLTYMNQTAQATCNNVGGIA 389

[Close]

BLAST of CcUC08G148490 vs. NCBI nr
Match: XP_011652824.2 (polygalacturonase [Cucumis sativus] >KAE8650860.1 hypothetical protein Csa_002650 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 5.2e-43
Identity = 95/153 (62.09%), Postives = 115/153 (75.16%), Query Frame = 0


Query: 46  GSVAKDAQEAGVQNITMKNALFSRTQNGVRIKAWARPSNGFVRSVLFQNIVMDNVQNQFL 105
           GS+AKD QE GVQN+T+KN +FSRTQNGVRIKAW +PSNGF R++LFQ+IVMDNVQN  +
Sbjct: 253 GSLAKDLQEDGVQNVTVKNVVFSRTQNGVRIKAWGKPSNGFARNILFQHIVMDNVQNPIV 312

Query: 106 LIKTIVQAIQDVRTRGYFFYLTKVIVVGMEQASGIKISDVTYQNIRGTSATKVAIKFDFS 165
           + +    + +                   E+ASG+KI+DVTYQ+I GTSATKVA+KFD S
Sbjct: 313 IDQNYCPSHKGC----------------PEKASGVKINDVTYQDIHGTSATKVAVKFDCS 372

Query: 166 PSNPCNRIKLQHVKLSYMNQIAQATCNNVGGIA 199
           P NPC RIKL +VKL+YMNQ AQATCNNVGGIA
Sbjct: 373 PINPCVRIKLDNVKLTYMNQTAQATCNNVGGIA 389

[Close]

BLAST of CcUC08G148490 vs. NCBI nr
Match: XP_008460449.1 (PREDICTED: polygalacturonase-like [Cucumis melo])

HSP 1 Score: 184.9 bits (468), Expect = 6.8e-43
Identity = 92/153 (60.13%), Postives = 116/153 (75.82%), Query Frame = 0


Query: 46  GSVAKDAQEAGVQNITMKNALFSRTQNGVRIKAWARPSNGFVRSVLFQNIVMDNVQNQFL 105
           GS+AKD QE GVQN+T+KN +FSRTQNGVRIKAW +PSNGF R++LFQ+IVMDNVQN  +
Sbjct: 138 GSLAKDVQEDGVQNVTVKNVVFSRTQNGVRIKAWGKPSNGFARNILFQHIVMDNVQNPII 197

Query: 106 LIKTIVQAIQDVRTRGYFFYLTKVIVVGMEQASGIKISDVTYQNIRGTSATKVAIKFDFS 165
           + +    + +                   E+ASG+KI+DVTYQ+I GTSATK+A+KFD S
Sbjct: 198 IDQNYCPSHKGC----------------PEKASGVKINDVTYQDIHGTSATKIAVKFDCS 257

Query: 166 PSNPCNRIKLQHVKLSYMNQIAQATCNNVGGIA 199
           P+NPC  IKL++V+L+YMNQ AQATCNNVGGIA
Sbjct: 258 PTNPCGGIKLENVRLTYMNQTAQATCNNVGGIA 274

[Close]

BLAST of CcUC08G148490 vs. NCBI nr
Match: KAA0068064.1 (polygalacturonase [Cucumis melo var. makuwa])

HSP 1 Score: 184.9 bits (468), Expect = 6.8e-43
Identity = 92/153 (60.13%), Postives = 116/153 (75.82%), Query Frame = 0


Query: 46  GSVAKDAQEAGVQNITMKNALFSRTQNGVRIKAWARPSNGFVRSVLFQNIVMDNVQNQFL 105
           GS+AKD QE GVQN+T+KN +FSRTQNGVRIKAW +PSNGF R++LFQ+IVMDNVQN  +
Sbjct: 254 GSLAKDVQEDGVQNVTVKNVVFSRTQNGVRIKAWGKPSNGFARNILFQHIVMDNVQNPII 313

Query: 106 LIKTIVQAIQDVRTRGYFFYLTKVIVVGMEQASGIKISDVTYQNIRGTSATKVAIKFDFS 165
           + +    + +                   E+ASG+KI+DVTYQ+I GTSATK+A+KFD S
Sbjct: 314 IDQNYCPSHKGC----------------PEKASGVKINDVTYQDIHGTSATKIAVKFDCS 373

Query: 166 PSNPCNRIKLQHVKLSYMNQIAQATCNNVGGIA 199
           P+NPC  IKL++V+L+YMNQ AQATCNNVGGIA
Sbjct: 374 PTNPCGGIKLENVRLTYMNQTAQATCNNVGGIA 390

[Close]

BLAST of CcUC08G148490 vs. ExPASy Swiss-Prot
Match: P48979 (Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.7e-32
Identity = 70/151 (46.36%), Postives = 99/151 (65.56%), Query Frame = 0


Query: 46  GSVAKDAQEAGVQNITMKNALFSRTQNGVRIKAWARPSNGFVRSVLFQNIVMDNVQNQFL 105
           GS+ K+ +EAGVQN+T+K   FS TQNG+RIK+W RPS GF R++LFQ+  M NV+N  +
Sbjct: 247 GSLGKEQEEAGVQNVTVKTVTFSGTQNGLRIKSWGRPSTGFARNILFQHATMVNVENPIV 306

Query: 106 LIKTIVQAIQDVRTRGYFFYLTKVIVVGMEQASGIKISDVTYQNIRGTSATKVAIKFDFS 165
           + +      +                    Q SG++ISDVTY++I GTSAT+VA+KFD S
Sbjct: 307 IDQHYCPDNKGC----------------PGQVSGVQISDVTYEDIHGTSATEVAVKFDCS 366

Query: 166 PSNPCNRIKLQHVKLSYMNQIAQATCNNVGG 197
           P +PC  IKL+ VKL+Y NQ A+++C++  G
Sbjct: 367 PKHPCREIKLEDVKLTYKNQAAESSCSHADG 381

[Close]

BLAST of CcUC08G148490 vs. ExPASy Swiss-Prot
Match: O22818 (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.9e-20
Identity = 57/153 (37.25%), Postives = 85/153 (55.56%), Query Frame = 0


Query: 46  GSVAKDAQEAGVQNITMKNALFSRTQNGVRIKAWARPSNGFVRSVLFQNIVMDNVQNQFL 105
           GS+ +  +E GV N+T+ N  F  T NGVRIK W + SN F R+++FQ+I M  V+N  +
Sbjct: 253 GSLGRAEEEQGVDNVTVSNVDFMGTNNGVRIKTWGKDSNSFARNIVFQHINMKMVKNPII 312

Query: 106 LIKTIVQAIQDVRTRGYFFYLTKVIVVGMEQASGIKISDVTYQNIRGTSATKVAIKFDFS 165
           +                 + L K      +Q SG+K+S+V Y++I GTS T+VA+  D S
Sbjct: 313 I--------------DQHYCLHKPC---PKQESGVKVSNVRYEDIHGTSNTEVAVLLDCS 372

Query: 166 PSNPCNRIKLQHVKLSYMNQIAQATCNNVGGIA 199
              PC  I +  V L  +++ AQA+C+N  G A
Sbjct: 373 KEKPCTGIVMDDVNLVSVHRPAQASCDNANGSA 388

[Close]

BLAST of CcUC08G148490 vs. ExPASy Swiss-Prot
Match: Q9SFB7 (Polygalacturonase QRT2 OS=Arabidopsis thaliana OX=3702 GN=QRT2 PE=1 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 3.9e-17
Identity = 51/151 (33.77%), Postives = 85/151 (56.29%), Query Frame = 0


Query: 46  GSVAKDAQEAGVQNITMKNALFSRTQNGVRIKAWARPSNGFVRSVLFQNIVMDNVQNQFL 105
           GS+ +D  EA V N+ +  A    T NGVRIK W +  +G  ++++FQ+I+M NV N  +
Sbjct: 293 GSLGEDNSEAYVSNVVVNKATLIGTTNGVRIKTW-QGGHGMAKNIIFQDIIMKNVTNPII 352

Query: 106 LIKTIVQAIQDVRTRGYFFYLTKVIVVGMEQASGIKISDVTYQNIRGTSATKVAIKFDFS 165
           + +     ++                   EQ S +++S+V Y+NI+GTS+  +A+KF  S
Sbjct: 353 INQDYCDRVE----------------ACPEQKSAVQVSNVLYKNIQGTSSRPIAVKFVCS 412

Query: 166 PSNPCNRIKLQHVKLSYMNQ--IAQATCNNV 195
            + PC  I +Q+VKL    Q  +++A+C+NV
Sbjct: 413 KNIPCRGISMQNVKLVDQTQQDVSKASCSNV 426

[Close]

BLAST of CcUC08G148490 vs. ExPASy Swiss-Prot
Match: Q6H9K0 (Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.3e-15
Identity = 52/151 (34.44%), Postives = 75/151 (49.67%), Query Frame = 0


Query: 46  GSVAKDAQEAGVQNITMKNALFSRTQNGVRIKAWARPSNGFVRSVLFQNIVMDNVQNQFL 105
           GS+ +   E  V+ IT+K   FS T NGVR+K W     G    + FQ++ M+NVQN  +
Sbjct: 228 GSLGRYNNEKEVRGITVKGCTFSGTMNGVRVKTWPNSPPGAATDLTFQDLTMNNVQNPVI 287

Query: 106 LIKTIVQAIQDVRTRGYFFYLTKVIVVGMEQASGIKISDVTYQNIRGTSATKVAIKFDFS 165
           L +      Q  R                +  S IK+S++ + NIRGTS  KVA+    S
Sbjct: 288 LDQEYCPYGQCSR----------------QAPSRIKLSNINFNNIRGTSTGKVAVVIACS 347

Query: 166 PSNPCNRIKLQHVKLSYMNQ--IAQATCNNV 195
              PC+ +K+  + LSY      A +TC+NV
Sbjct: 348 HGMPCSNMKIGEINLSYRGAGGPATSTCSNV 362

[Close]

BLAST of CcUC08G148490 vs. ExPASy Swiss-Prot
Match: P05117 (Polygalacturonase-2 OS=Solanum lycopersicum OX=4081 GN=PG2 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.8e-14
Identity = 48/150 (32.00%), Postives = 80/150 (53.33%), Query Frame = 0


Query: 46  GSVAKDAQEAGVQNITMKNALFSRTQNGVRIKAWARPSNGFVRSVLFQNIVMDNVQNQFL 105
           GS+     EA V N+T+  A     +NGVRIK W +  +G   ++ F N+ M +V+   +
Sbjct: 298 GSLGSGNSEAYVSNVTVNEAKIIGAENGVRIKTW-QGGSGQASNIKFLNVEMQDVKYPII 357

Query: 106 LIKTIVQAIQDVRTRGYFFYLTKVIVVGMEQASGIKISDVTYQNIRGTSATKVAIKFDFS 165
           + +     ++                  ++Q S +++ +V Y+NI+GTSATKVAIKFD S
Sbjct: 358 IDQNYCDRVEPC----------------IQQFSAVQVKNVVYENIKGTSATKVAIKFDCS 417

Query: 166 PSNPCNRIKLQHVKL-SYMNQIAQATCNNV 195
            + PC  I ++++ L     + ++ATC NV
Sbjct: 418 TNFPCEGIIMENINLVGESGKPSEATCKNV 430

[Close]

BLAST of CcUC08G148490 vs. ExPASy TrEMBL
Match: A0A0A0LCF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G634290 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 3.9e-44
Identity = 96/156 (61.54%), Postives = 117/156 (75.00%), Query Frame = 0


Query: 43  CENGSVAKDAQEAGVQNITMKNALFSRTQNGVRIKAWARPSNGFVRSVLFQNIVMDNVQN 102
           C  GS+AKD QE GVQN+T+KN +FSRTQNGVRIKAW +PSNGF R++LFQ+IVMDNVQN
Sbjct: 3   CSIGSLAKDLQEDGVQNVTVKNVVFSRTQNGVRIKAWGKPSNGFARNILFQHIVMDNVQN 62

Query: 103 QFLLIKTIVQAIQDVRTRGYFFYLTKVIVVGMEQASGIKISDVTYQNIRGTSATKVAIKF 162
             ++ +    + +                   E+ASG+KI+DVTYQ+I GTSATKVA+KF
Sbjct: 63  PIVIDQNYCPSHKGC----------------PEKASGVKINDVTYQDIHGTSATKVAVKF 122

Query: 163 DFSPSNPCNRIKLQHVKLSYMNQIAQATCNNVGGIA 199
           D SP NPC RIKL++VKL+YMNQ AQATCNNVGGIA
Sbjct: 123 DCSPINPCVRIKLENVKLTYMNQTAQATCNNVGGIA 142

[Close]

BLAST of CcUC08G148490 vs. ExPASy TrEMBL
Match: A0A5A7VKX0 (Polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G00120 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 3.3e-43
Identity = 92/153 (60.13%), Postives = 116/153 (75.82%), Query Frame = 0


Query: 46  GSVAKDAQEAGVQNITMKNALFSRTQNGVRIKAWARPSNGFVRSVLFQNIVMDNVQNQFL 105
           GS+AKD QE GVQN+T+KN +FSRTQNGVRIKAW +PSNGF R++LFQ+IVMDNVQN  +
Sbjct: 254 GSLAKDVQEDGVQNVTVKNVVFSRTQNGVRIKAWGKPSNGFARNILFQHIVMDNVQNPII 313

Query: 106 LIKTIVQAIQDVRTRGYFFYLTKVIVVGMEQASGIKISDVTYQNIRGTSATKVAIKFDFS 165
           + +    + +                   E+ASG+KI+DVTYQ+I GTSATK+A+KFD S
Sbjct: 314 IDQNYCPSHKGC----------------PEKASGVKINDVTYQDIHGTSATKIAVKFDCS 373

Query: 166 PSNPCNRIKLQHVKLSYMNQIAQATCNNVGGIA 199
           P+NPC  IKL++V+L+YMNQ AQATCNNVGGIA
Sbjct: 374 PTNPCGGIKLENVRLTYMNQTAQATCNNVGGIA 390

[Close]

BLAST of CcUC08G148490 vs. ExPASy TrEMBL
Match: A0A1S3CCL4 (polygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103499261 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 3.3e-43
Identity = 92/153 (60.13%), Postives = 116/153 (75.82%), Query Frame = 0


Query: 46  GSVAKDAQEAGVQNITMKNALFSRTQNGVRIKAWARPSNGFVRSVLFQNIVMDNVQNQFL 105
           GS+AKD QE GVQN+T+KN +FSRTQNGVRIKAW +PSNGF R++LFQ+IVMDNVQN  +
Sbjct: 138 GSLAKDVQEDGVQNVTVKNVVFSRTQNGVRIKAWGKPSNGFARNILFQHIVMDNVQNPII 197

Query: 106 LIKTIVQAIQDVRTRGYFFYLTKVIVVGMEQASGIKISDVTYQNIRGTSATKVAIKFDFS 165
           + +    + +                   E+ASG+KI+DVTYQ+I GTSATK+A+KFD S
Sbjct: 198 IDQNYCPSHKGC----------------PEKASGVKINDVTYQDIHGTSATKIAVKFDCS 257

Query: 166 PSNPCNRIKLQHVKLSYMNQIAQATCNNVGGIA 199
           P+NPC  IKL++V+L+YMNQ AQATCNNVGGIA
Sbjct: 258 PTNPCGGIKLENVRLTYMNQTAQATCNNVGGIA 274

[Close]

BLAST of CcUC08G148490 vs. ExPASy TrEMBL
Match: A0A5D3C3E8 (Polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001500 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 4.3e-43
Identity = 92/153 (60.13%), Postives = 116/153 (75.82%), Query Frame = 0


Query: 46  GSVAKDAQEAGVQNITMKNALFSRTQNGVRIKAWARPSNGFVRSVLFQNIVMDNVQNQFL 105
           GS+AKD QE GVQN+T+KN +FSRTQNGVRIKAW +PSNGF R++LFQ+IVMDNVQN  +
Sbjct: 254 GSLAKDVQEDGVQNVTVKNVVFSRTQNGVRIKAWGKPSNGFARNILFQHIVMDNVQNPIV 313

Query: 106 LIKTIVQAIQDVRTRGYFFYLTKVIVVGMEQASGIKISDVTYQNIRGTSATKVAIKFDFS 165
           + +    + +                   E+ASG+KI+DVTYQ+I GTSATK+A+KFD S
Sbjct: 314 IDQNYCPSHKGC----------------PEKASGVKINDVTYQDIHGTSATKIAVKFDCS 373

Query: 166 PSNPCNRIKLQHVKLSYMNQIAQATCNNVGGIA 199
           P+NPC  IKL++V+L+YMNQ AQATCNNVGGIA
Sbjct: 374 PTNPCGGIKLENVRLTYMNQTAQATCNNVGGIA 390

[Close]

BLAST of CcUC08G148490 vs. ExPASy TrEMBL
Match: A0A6J1EHY1 (polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111434520 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.6e-42
Identity = 93/154 (60.39%), Postives = 117/154 (75.97%), Query Frame = 0


Query: 46  GSVAKDAQEAGVQNITMKNALFSRTQNGVRIKAWARPSNGFVRSVLFQNIVMDNVQNQFL 105
           GS+AKD +EAGVQN+T+K ALFSRTQNGVRIKAW RPSNGFV+++LFQ+IVMDNVQN  +
Sbjct: 245 GSLAKDLEEAGVQNVTVKKALFSRTQNGVRIKAWGRPSNGFVKNILFQHIVMDNVQNPIV 304

Query: 106 LIKTIVQAIQDVRTRGYFFYLTKVIVVGMEQASGIKISDVTYQNIRGTSATKVAIKFDFS 165
           + +    + +                    QASG+KISDVTYQNI GTSAT++A+KFD S
Sbjct: 305 IDQNYCPSHKGC----------------PGQASGVKISDVTYQNIHGTSATQIAVKFDCS 364

Query: 166 PSNPCNRIKLQHVKLSYMNQIAQATCNNVGGIAT 200
           P+NPC+RIK++ VKLSY +QIA ATC++VGG AT
Sbjct: 365 PTNPCSRIKMEDVKLSYKDQIAGATCSHVGGTAT 382

[Close]

BLAST of CcUC08G148490 vs. TAIR 10
Match: AT2G43890.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 136.3 bits (342), Expect = 2.6e-32
Identity = 70/152 (46.05%), Postives = 98/152 (64.47%), Query Frame = 0


Query: 46  GSVAKDAQEAGVQNITMKNALFSRTQNGVRIKAWARPSNGFVRSVLFQNIVMDNVQNQFL 105
           GS+ +DA EAGV+NIT+ N++FS + NGVRIK WAR S GFVR+VLFQN++M NVQN  +
Sbjct: 246 GSLGRDANEAGVENITLINSVFSGSDNGVRIKTWARQSTGFVRNVLFQNLIMKNVQNPII 305

Query: 106 LIKTIVQAIQDVRTRGYFFYLTKVIVVGMEQASGIKISDVTYQNIRGTSATKVAIKFDFS 165
           + +    + Q                   +Q SG+KIS V Y+NI+GTS T+ A+ FD S
Sbjct: 306 VDQNYCPSNQGC----------------PKQGSGVKISQVVYRNIQGTSRTQQALTFDCS 365

Query: 166 PSNPCNRIKLQHVKLSYMNQIAQATCNNVGGI 198
            SNPC  I+L  +KL++  + A +TC N+ G+
Sbjct: 366 RSNPCQAIRLHDIKLTFNGRSATSTCKNIKGV 381

[Close]

BLAST of CcUC08G148490 vs. TAIR 10
Match: AT3G59850.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-30
Identity = 68/151 (45.03%), Postives = 95/151 (62.91%), Query Frame = 0


Query: 46  GSVAKDAQEAGVQNITMKNALFSRTQNGVRIKAWARPSNGFVRSVLFQNIVMDNVQNQFL 105
           GS+ K++ E GVQNIT+K A F+ T+NGVRIK+WARPSNGF +++ FQ+ VM+NVQN  +
Sbjct: 242 GSLGKESVEVGVQNITVKTATFTGTENGVRIKSWARPSNGFAKNIRFQHCVMNNVQNPIV 301

Query: 106 LIKTIVQAIQDVRTRGYFFYLTKVIVVGMEQASGIKISDVTYQNIRGTSATKVAIKFDFS 165
           + +      ++                   Q SGIKISDV + +I GTSAT+V +K D S
Sbjct: 302 IDQNYCPGNENC----------------PNQVSGIKISDVMFFDIHGTSATEVGVKLDCS 361

Query: 166 PSNPCNRIKLQHVKLSYMNQIAQATCNNVGG 197
              PC  I++Q VKL+Y N+ A   C++ GG
Sbjct: 362 SKKPCTGIRIQDVKLTYRNKPATTDCSHAGG 376

[Close]

BLAST of CcUC08G148490 vs. TAIR 10
Match: AT2G43870.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 128.6 bits (322), Expect = 5.4e-30
Identity = 67/152 (44.08%), Postives = 94/152 (61.84%), Query Frame = 0


Query: 46  GSVAKDAQEAGVQNITMKNALFSRTQNGVRIKAWARPSNGFVRSVLFQNIVMDNVQNQFL 105
           GS+ KD+ E+GVQN+T+K   F+ T NGVRIK+WARPS+GF +++ FQ+ VM+NV+N  +
Sbjct: 240 GSLGKDSVESGVQNVTVKTVTFTGTDNGVRIKSWARPSSGFAKNIRFQHCVMNNVENPII 299

Query: 106 LIKTIVQAIQDVRTRGYFFYLTKVIVVGMEQASGIKISDVTYQNIRGTSATKVAIKFDFS 165
           + +         R                 Q SGIKISDV + +I GTSAT+V +K D S
Sbjct: 300 IDQNYCPDHDCPR-----------------QVSGIKISDVLFVDIHGTSATEVGVKLDCS 359

Query: 166 PSNPCNRIKLQHVKLSYMNQIAQATCNNVGGI 198
              PC  I+L+ VKL+Y N+ A + C + GGI
Sbjct: 360 SKKPCTGIRLEDVKLTYQNKPAASACTHAGGI 374

[Close]

BLAST of CcUC08G148490 vs. TAIR 10
Match: AT2G43880.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 125.2 bits (313), Expect = 6.0e-29
Identity = 65/154 (42.21%), Postives = 98/154 (63.64%), Query Frame = 0


Query: 46  GSVAKDAQEAGVQNITMKNALFSRTQNGVRIKAWARPSNGFVRSVLFQNIVMDNVQNQFL 105
           GS+   A E GVQN+T+ +++F++TQNGVRIK WARPS GFV +V+F+N++M+NV+N  +
Sbjct: 248 GSLGDYANEEGVQNVTVTSSVFTKTQNGVRIKTWARPSRGFVNNVVFRNLIMNNVENPVI 307

Query: 106 LIKTIVQAIQDVRTRGYFFYLTKVIVVGMEQASGIKISDVTYQNIRGTSATKVAIKFDFS 165
           + +           +G              Q+SG+KIS VT+ NI+GTS T +A+K D S
Sbjct: 308 IDQNYCP-----NGKGC-----------PRQSSGVKISGVTFANIKGTSTTPIAMKLDCS 367

Query: 166 PSNPCNRIKLQHVKLSYMNQIAQATCNNVGGIAT 200
            SN C  ++LQ +KL+YM + + + C N  G A+
Sbjct: 368 GSNHCTGLRLQDIKLTYMRRSSASYCRNAHGRAS 385

[Close]

BLAST of CcUC08G148490 vs. TAIR 10
Match: AT1G05650.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 122.9 bits (307), Expect = 3.0e-28
Identity = 68/152 (44.74%), Postives = 95/152 (62.50%), Query Frame = 0


Query: 46  GSVAKDAQEAGVQNITMKNALFSRTQNGVRIKAWARPSNGFVRSVLFQNIVMDNVQNQFL 105
           GS+AK   E GV+N+T+ +++F+ +QNGVRIK+WARPS GFVR+V FQN++M NVQN  +
Sbjct: 245 GSLAKQLNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQNLIMRNVQNPII 304

Query: 106 LIKTIVQAIQDVRTRGYFFYLTKVIVVGMEQASGIKISDVTYQNIRGTSATKVAIKFDFS 165
           + +    + Q   T                + SG+KI+ VTY+NI+GTSAT+ A+K   S
Sbjct: 305 IDQNYCPSNQGCPT----------------EHSGVKITQVTYKNIQGTSATQEAMKLVCS 364

Query: 166 PSNPCNRIKLQHVKLSY-MNQIAQATCNNVGG 197
            SNPC  I LQ +KL+Y     A + C N  G
Sbjct: 365 KSNPCTGITLQDIKLTYNKGTPATSLCFNAVG 380

The following BLAST results are available for this feature:

BLAST of CcUC08G148490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888748.1	5.6e-45	63.64	polygalacturonase-like, partial [Benincasa hispida]	[more]
XP_011652823.2	3.1e-43	62.09	polygalacturonase [Cucumis sativus] >KAE8650851.1 hypothetical protein Csa_00145...	[more]
XP_011652824.2	5.2e-43	62.09	polygalacturonase [Cucumis sativus] >KAE8650860.1 hypothetical protein Csa_00265...	[more]
XP_008460449.1	6.8e-43	60.13	PREDICTED: polygalacturonase-like [Cucumis melo]	[more]
KAA0068064.1	6.8e-43	60.13	polygalacturonase [Cucumis melo var. makuwa]	[more]

BLAST of CcUC08G148490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P48979	5.7e-32	46.36	Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1	[more]
O22818	2.9e-20	37.25	Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g4386...	[more]
Q9SFB7	3.9e-17	33.77	Polygalacturonase QRT2 OS=Arabidopsis thaliana OX=3702 GN=QRT2 PE=1 SV=2	[more]
Q6H9K0	6.3e-15	34.44	Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 S...	[more]
P05117	1.8e-14	32.00	Polygalacturonase-2 OS=Solanum lycopersicum OX=4081 GN=PG2 PE=1 SV=1	[more]

BLAST of CcUC08G148490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCF2	3.9e-44	61.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G634290 PE=3 SV=1	[more]
A0A5A7VKX0	3.3e-43	60.13	Polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G00...	[more]
A0A1S3CCL4	3.3e-43	60.13	polygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103499261 PE=3 SV=1	[more]
A0A5D3C3E8	4.3e-43	60.13	Polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00...	[more]
A0A6J1EHY1	1.6e-42	60.39	polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111434520 PE=3 SV=1	[more]

BLAST of CcUC08G148490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43890.1	2.6e-32	46.05	Pectin lyase-like superfamily protein	[more]
AT3G59850.1	1.1e-30	45.03	Pectin lyase-like superfamily protein	[more]
AT2G43870.1	5.4e-30	44.08	Pectin lyase-like superfamily protein	[more]
AT2G43880.1	6.0e-29	42.21	Pectin lyase-like superfamily protein	[more]
AT1G05650.1	3.0e-28	44.74	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 20..198 e-value: 8.7E-29 score: 102.6
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 46..103 e-value: 7.1E-10 score: 38.4 coord: 135..194 e-value: 6.2E-9 score: 35.3
None	No IPR available	PANTHER	PTHR31375:SF168	POLYGALACTURONASE-LIKE	coord: 46..198
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 46..198
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 46..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC08G148490.1	CcUC08G148490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0004650	polygalacturonase activity