CcUC08G148080 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC08G148080
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr08: 9814156 .. 9814721 (+)
RNA-Seq ExpressionCcUC08G148080
SyntenyCcUC08G148080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTTCCCATTTATTATTGTAGCTTCATGGTCAATAACCAAACCCTCATCCAACCGATCATAATAAGTAGTGTGATCTTTTGCTAGGCAGACAAGAGTTCATTGGTTGAATAAACCTCAAGTTCAAAATCTTGATCAACCTCCTAGGAGCCTTGAGCCCGATCATGTCCCGGAATGGAAAGACAGATGTATCATTGTGTGTCTTGTCTCATGTAGAAACCTGCAGAATGGGCTCTGCACTCTCCTCCAGGGAGTTTCTCCTTTGTGCATCAAGTTTTGTTTGGTTGCCAATGGTATTTGATATGGCTTTTGGTAGCCAGAAGCCGGGTCTCTCGAGGAATGGTGCTCGATCAAGAACCAATGGTTCTCTCAACGTTATTTCCATCCCATTGTATATCCACAATGTCAAGGTTGCTTCACCTTTGAGACCTAAAGAAAACCAGCCTAAACCTGCTATTGAAATATCAATGCTATTGACAACCCAACTTGTGCCAGAAATTTTGACCTCTCTCTCTTCCCATTTGCCTATTTCAGAAGCACGGTCGACGCCAATGGGTGGCTAG

mRNA sequence

ATGTCTCTTCCCATTTATTATTGTAGCTTCATGGTCAATAACCAAACCCTCATCCAACCGATCATAATAAGAGCCTTGAGCCCGATCATGTCCCGGAATGGAAAGACAGATGTATCATTGTGTGTCTTGTCTCATGTAGAAACCTGCAGAATGGGCTCTGCACTCTCCTCCAGGGAGTTTCTCCTTTGTGCATCAAGTTTTGTTTGGTTGCCAATGGTATTTGATATGGCTTTTGGTAGCCAGAAGCCGGGTCTCTCGAGGAATGGTGCTCGATCAAGAACCAATGGTTCTCTCAACGTTATTTCCATCCCATTGTATATCCACAATGTCAAGGTTGCTTCACCTTTGAGACCTAAAGAAAACCAGCCTAAACCTGCTATTGAAATATCAATGCTATTGACAACCCAACTTGTGCCAGAAATTTTGACCTCTCTCTCTTCCCATTTGCCTATTTCAGAAGCACGGTCGACGCCAATGGGTGGCTAG

Coding sequence (CDS)

ATGTCTCTTCCCATTTATTATTGTAGCTTCATGGTCAATAACCAAACCCTCATCCAACCGATCATAATAAGAGCCTTGAGCCCGATCATGTCCCGGAATGGAAAGACAGATGTATCATTGTGTGTCTTGTCTCATGTAGAAACCTGCAGAATGGGCTCTGCACTCTCCTCCAGGGAGTTTCTCCTTTGTGCATCAAGTTTTGTTTGGTTGCCAATGGTATTTGATATGGCTTTTGGTAGCCAGAAGCCGGGTCTCTCGAGGAATGGTGCTCGATCAAGAACCAATGGTTCTCTCAACGTTATTTCCATCCCATTGTATATCCACAATGTCAAGGTTGCTTCACCTTTGAGACCTAAAGAAAACCAGCCTAAACCTGCTATTGAAATATCAATGCTATTGACAACCCAACTTGTGCCAGAAATTTTGACCTCTCTCTCTTCCCATTTGCCTATTTCAGAAGCACGGTCGACGCCAATGGGTGGCTAG

Protein sequence

MSLPIYYCSFMVNNQTLIQPIIIRALSPIMSRNGKTDVSLCVLSHVETCRMGSALSSREFLLCASSFVWLPMVFDMAFGSQKPGLSRNGARSRTNGSLNVISIPLYIHNVKVASPLRPKENQPKPAIEISMLLTTQLVPEILTSLSSHLPISEARSTPMGG
Homology
[Close]
BLAST of CcUC08G148080 vs. NCBI nr
Match: RYR51883.1 (hypothetical protein Ahy_A06g026842 isoform A [Arachis hypogaea])

HSP 1 Score: 116.3 bits (290), Expect = 2.4e-22
Identity = 59/96 (61.46%), Postives = 71/96 (73.96%), Query Frame = 0 

Query: 66  SFVWLPMVFDMAFGSQKPGLSRNGARSRTNGSLNVISIPLYIHNVKVASPLRPKENQPKP 125
           S VWLP+  +MA G+QKPG SR+ ARSRTNGSL V S P  +H+  VASPLR +E QPKP
Sbjct: 138 SLVWLPIASEMALGNQKPGFSRDRARSRTNGSLKVTSTPSKVHSFMVASPLRQREYQPKP 197

Query: 126 AIEISMLLTTQLVPEILTSLSSHLPISEARSTPMGG 162
           A+  S LLT+QLVP+ L S+S H+P S A S PMGG
Sbjct: 198 AMATSTLLTSQLVPDTLISISCHVPNSAACSLPMGG 233

[Close]
BLAST of CcUC08G148080 vs. NCBI nr
Match: KAF7804048.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Senna tora])

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-08
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 112 VASPLRPKENQPKPAIEISMLLTTQLVPEILTSLSSHLPISEARSTPMGG 162
           VASP RP +NQPKPA+ +SMLLT+QL+P+  TSLS H+P S  RS PMGG
Sbjct: 2   VASPFRPNDNQPKPAVAMSMLLTSQLLPDTFTSLSCHVPNSTVRSLPMGG 51

[Close]
BLAST of CcUC08G148080 vs. ExPASy TrEMBL
Match: A0A2P2IM45 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.1e-25
Identity = 65/90 (72.22%), Postives = 68/90 (75.56%), Query Frame = 0 

Query: 72  MVFDMAFGSQKPGLSRNGARSRTNGSLNVISIPLYIHNVKVASPLRPKENQPKPAIEISM 131
           M  D AFGSQ PGLSRNGARSRT GSL VIS+P Y+HN  VASPLRPKENQPKPA  ISM
Sbjct: 1   MASDTAFGSQNPGLSRNGARSRTKGSLIVISMPSYVHNFSVASPLRPKENQPKPATAISM 60

Query: 132 LLTTQLVPEILTSLSSHLPISEARSTPMGG 162
           L T+QL P  L S SSH P SEA S P GG
Sbjct: 61  LFTSQLAPATLISFSSHFPNSEALSLPTGG 90

[Close]
BLAST of CcUC08G148080 vs. ExPASy TrEMBL
Match: A0A445CLW9 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A06g026842 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-22
Identity = 59/96 (61.46%), Postives = 71/96 (73.96%), Query Frame = 0 

Query: 66  SFVWLPMVFDMAFGSQKPGLSRNGARSRTNGSLNVISIPLYIHNVKVASPLRPKENQPKP 125
           S VWLP+  +MA G+QKPG SR+ ARSRTNGSL V S P  +H+  VASPLR +E QPKP
Sbjct: 138 SLVWLPIASEMALGNQKPGFSRDRARSRTNGSLKVTSTPSKVHSFMVASPLRQREYQPKP 197

Query: 126 AIEISMLLTTQLVPEILTSLSSHLPISEARSTPMGG 162
           A+  S LLT+QLVP+ L S+S H+P S A S PMGG
Sbjct: 198 AMATSTLLTSQLVPDTLISISCHVPNSAACSLPMGG 233

The following BLAST results are available for this feature:
BLAST of CcUC08G148080 vs. NCBI nr
Match NameE-valueIdentityDescription
RYR51883.12.4e-2261.46hypothetical protein Ahy_A06g026842 isoform A [Arachis hypogaea][more]
KAF7804048.12.0e-0866.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Senna tora][more]
BLAST of CcUC08G148080 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC08G148080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P2IM451.1e-2572.22Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
A0A445CLW91.2e-2261.46Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A06g026842 PE=4 SV=1[more]
BLAST of CcUC08G148080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC08G148080.1CcUC08G148080.1mRNA