CcUC08G147890 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC08G147890
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr08: 8447027 .. 8447706 (-)
RNA-Seq Expression	CcUC08G147890
Synteny	CcUC08G147890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGTGGCTACTCCTCTCATAATTCCAATTGATTTGAGAGCTCATAAAGTCCGAACGAGCGTTAAGTCCAATTCTTAATACTTAATACGTAGTAGATTTATAGTTCAACGTTCATATAACTAAATATATATTATGCTTATAATTACGTCTTATACTTATAATTGAATTATTGACCTATCTGTACACGTAAATATATTAATACCTACGCTTTGAAACATTAAAATGAATTATTAATCGTAAATACATTTGAAAATAAGTGAAATTTCCTTTGAAAGTTCCTCTCTTATAAACTAGTCAACGGTCCAATTTTTATGTTTTGAATATTTTATTGGATTATATTTCATTGGATTAGTAGGTTCATTCAATCAATGAAGCCTACCCCACCCCATGACCAATTCAACGGTTGATATTTCACTTGCCCACAACTTCGTTTATATCTCTTTATCTTTTCCTTGCAGAAAAACATTACTTTACCTTATCTCCTTTCAAACCTTTCTTCCTTGTTCTTCTTCTTCACTTTAACAAAAATACAGAAGATTGATCCAAAATCCAATGGATGTGAAGACAAAGAAATACACTTCCTTGGAGCATTTGAAATCTTCAAAGAAACCTACAAAATCATCAACAAAAACAAGAAGATCTTTGCCATGGCAGCTCTTTGCTTCATCCACCCTTAA

mRNA sequence

ATGTACAAAAACATTACTTTACCTTATCTCCTTTCAAACCTTTCTTCCTTGTTCTTCTTCTTCACTTTAACAAAAATACAGAAGATTGATCCAAAATCCAATGGATGTGAAGACAAAGAAATACACTTCCTTGGAGCATTTGAAATCTTCAAAGAAACCTACAAAATCATCAACAAAAACAAGAAGATCTTTGCCATGGCAGCTCTTTGCTTCATCCACCCTTAA

Coding sequence (CDS)

ATGTACAAAAACATTACTTTACCTTATCTCCTTTCAAACCTTTCTTCCTTGTTCTTCTTCTTCACTTTAACAAAAATACAGAAGATTGATCCAAAATCCAATGGATGTGAAGACAAAGAAATACACTTCCTTGGAGCATTTGAAATCTTCAAAGAAACCTACAAAATCATCAACAAAAACAAGAAGATCTTTGCCATGGCAGCTCTTTGCTTCATCCACCCTTAA

Protein sequence

MYKNITLPYLLSNLSSLFFFFTLTKIQKIDPKSNGCEDKEIHFLGAFEIFKETYKIINKNKKIFAMAALCFIHP

Homology

[Close]

BLAST of CcUC08G147890 vs. NCBI nr
Match: KAE8646597.1 (hypothetical protein Csa_005461 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 4.1e-09
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 39 KEIHFLGAFEIFKETYKIINKNKKIFAMAALCFIHP 75
          KE+ FLGAF+IFKETYKII+KNKKIFAMAALCFIHP
Sbjct: 6  KEMQFLGAFQIFKETYKIISKNKKIFAMAALCFIHP 41

[Close]

BLAST of CcUC08G147890 vs. NCBI nr
Match: XP_038885959.1 (uncharacterized protein LOC120076262 [Benincasa hispida])

HSP 1 Score: 70.9 bits (172), Expect = 5.4e-09
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 39 KEIHFLGAFEIFKETYKIINKNKKIFAMAALCFIHP 75
          KE+ FLG FE+FKETYK+INKNKKIFA+AALCFIHP
Sbjct: 6  KEMQFLGTFEVFKETYKVINKNKKIFALAALCFIHP 41

[Close]

BLAST of CcUC08G147890 vs. NCBI nr
Match: KAE8647346.1 (hypothetical protein Csa_003854 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 7.0e-09
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 39 KEIHFLGAFEIFKETYKIINKNKKIFAMAALCFIHP 75
          KE+ FLGAF IFKETYKII+KNKKIFAMAALCFIHP
Sbjct: 6  KEMQFLGAFRIFKETYKIISKNKKIFAMAALCFIHP 41

[Close]

BLAST of CcUC08G147890 vs. NCBI nr
Match: KAG7025017.1 (hypothetical protein SDJN02_13838, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 68.9 bits (167), Expect = 2.0e-08
Identity = 40/77 (51.95%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 1   MYKNITLPYLLSNLSSLFFFFTLTKIQKIDPKS---NGCEDKEIHFLGAFEIFKETYKII 60
           MY +  L  LL  L  L +   L  +     KS      + K++ FLGAFEIFKET+KII
Sbjct: 249 MYVSANLSLLLLILVFLLWRLVLETMFYFVCKSYHHESIDHKDMQFLGAFEIFKETFKII 308

Query: 61  NKNKKIFAMAALCFIHP 75
           NKN+KI AMAALCFIHP
Sbjct: 309 NKNRKIIAMAALCFIHP 325

[Close]

BLAST of CcUC08G147890 vs. NCBI nr
Match: XP_008464353.1 (PREDICTED: uncharacterized protein LOC103502262 [Cucumis melo] >KAA0045263.1 putative transmembrane protein [Cucumis melo var. makuwa] >TYK28689.1 putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 2.7e-08
Identity = 30/36 (83.33%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 39 KEIHFLGAFEIFKETYKIINKNKKIFAMAALCFIHP 75
          KE+ FLGAF+IF+ETYKII+KNKKIFAM+ALCFIHP
Sbjct: 6  KEMQFLGAFQIFEETYKIISKNKKIFAMSALCFIHP 41

[Close]

BLAST of CcUC08G147890 vs. ExPASy TrEMBL
Match: A0A0A0KJQ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421800 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.4e-09
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 39 KEIHFLGAFEIFKETYKIINKNKKIFAMAALCFIHP 75
          KE+ FLGAF IFKETYKII+KNKKIFAMAALCFIHP
Sbjct: 6  KEMQFLGAFRIFKETYKIISKNKKIFAMAALCFIHP 41

[Close]

BLAST of CcUC08G147890 vs. ExPASy TrEMBL
Match: A0A5D3DZ60 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1810G00100 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-08
Identity = 30/36 (83.33%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 39 KEIHFLGAFEIFKETYKIINKNKKIFAMAALCFIHP 75
          KE+ FLGAF+IF+ETYKII+KNKKIFAM+ALCFIHP
Sbjct: 6  KEMQFLGAFQIFEETYKIISKNKKIFAMSALCFIHP 41

[Close]

BLAST of CcUC08G147890 vs. ExPASy TrEMBL
Match: A0A1S3CMT6 (uncharacterized protein LOC103502262 OS=Cucumis melo OX=3656 GN=LOC103502262 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-08
Identity = 30/36 (83.33%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 39 KEIHFLGAFEIFKETYKIINKNKKIFAMAALCFIHP 75
          KE+ FLGAF+IF+ETYKII+KNKKIFAM+ALCFIHP
Sbjct: 6  KEMQFLGAFQIFEETYKIISKNKKIFAMSALCFIHP 41

[Close]

BLAST of CcUC08G147890 vs. ExPASy TrEMBL
Match: A0A6J1ILV5 (uncharacterized protein LOC111476451 OS=Cucurbita maxima OX=3661 GN=LOC111476451 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.2e-08
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 39 KEIHFLGAFEIFKETYKIINKNKKIFAMAALCFIHP 75
          K++ F GAFEIFKET+KIINKN+KIFAMAALCFIHP
Sbjct: 6  KDMQFNGAFEIFKETFKIINKNRKIFAMAALCFIHP 41

[Close]

BLAST of CcUC08G147890 vs. ExPASy TrEMBL
Match: A0A6J1DJN8 (uncharacterized protein LOC111021154 OS=Momordica charantia OX=3673 GN=LOC111021154 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.2e-07
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 37 EDKEIHFLGAFEIFKETYKIINKNKKIFAMAALCFIHP 75
          + K + +LG  EIFKE++KIINKN+KIFAMAALCFIHP
Sbjct: 7  QHKSMQYLGTLEIFKESFKIINKNRKIFAMAALCFIHP 44

The following BLAST results are available for this feature:

BLAST of CcUC08G147890 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646597.1	4.1e-09	88.89	hypothetical protein Csa_005461 [Cucumis sativus]	[more]
XP_038885959.1	5.4e-09	83.33	uncharacterized protein LOC120076262 [Benincasa hispida]	[more]
KAE8647346.1	7.0e-09	88.89	hypothetical protein Csa_003854 [Cucumis sativus]	[more]
KAG7025017.1	2.0e-08	51.95	hypothetical protein SDJN02_13838, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_008464353.1	2.7e-08	83.33	PREDICTED: uncharacterized protein LOC103502262 [Cucumis melo] >KAA0045263.1 put...	[more]

BLAST of CcUC08G147890 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC08G147890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJQ4	3.4e-09	88.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421800 PE=4 SV=1	[more]
A0A5D3DZ60	1.3e-08	83.33	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3CMT6	1.3e-08	83.33	uncharacterized protein LOC103502262 OS=Cucumis melo OX=3656 GN=LOC103502262 PE=...	[more]
A0A6J1ILV5	2.2e-08	83.33	uncharacterized protein LOC111476451 OS=Cucurbita maxima OX=3661 GN=LOC111476451...	[more]
A0A6J1DJN8	3.2e-07	71.05	uncharacterized protein LOC111021154 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]

BLAST of CcUC08G147890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC08G147890.1	CcUC08G147890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane