CcUC08G147450 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC08G147450
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	40S ribosomal protein SA
Location	CicolChr08: 6541068 .. 6542573 (-)
RNA-Seq Expression	CcUC08G147450
Synteny	CcUC08G147450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAGACATAAACCGACTGGCTCGCGCGCTGCTACAGTGCCCTATGCTTCGCACCCCACATCGTACACCCTCGCGCATAGCATAGGATGTCTGTTCTGGCTTTTGGCAAGGATGGTTCTACAAATGCGCGGAACAATTCGTGCTGGGCACAAGTGGGATGTGATGGTAAATTCCTAATTCAAATTCCTATTAGGACTTTAGAAACGACATTTGGATTCAAAGCTTTTAATTAACAATTATTCTGGGGAACTATTTCCTTGTGTAGGTGGATTTGTTTTTCTATCGCGAGCCTGAGGAGGCTAAGGAGCCAGAAGAGGAAGAGGCTCTTCCACCCCCAGATTTTGGCATTGCTGACTATGGTGCTGCTCCACTTGTTGGCTCAGATCAATGGACTGCACAAATTCCTGATGCTCAATGGGGTGCTGCAGATGCAATTCCTGCTGCTGCTGTTCCACCTGCTTCCGGTGTCGAATGGGCACAAGAGCCAGGTCAAACATGAGCTTTTGTTTTTAATCATTTATTTGAATGGCTATCTGAGCTTTTGGTATGTCTATTCATGTAAGCTGGACAATTCATTTTGTCTGTTTTCCATATGAAGTTTTTGATTAGTATCTACCTACCTACCTCATACTGCCAATTAACCCTGTTCTCTGCCATTACATTGTTTTTGCATCTTAGACATCATTGACGAGGAGTTGTAACATGAAACTAACTAGCTGGGGTTGGTCTCAGCTTGATTGTCTGTTTGAGTTGAACAGAAGAAAATGATTTTGATGCTTACACTATATTTGGGTCATTAGTCATGGAAAGGGTGCTTAAGAAGTACTTCTGAACCCAAGTAATATTGATACTTCTACAATTTAGTACTTCCAGAAAAGCAATTGATATCTTGCTTAGTTAAGTGCTTTGGCTAGCTTTTTAACACTTAATTTTCTAATTTCTTGCGACATTAGTTTTCTTTTCCTGATTTTTCTACATGCATTTCTACTCATTTTCTCACCATTGTTTTTCCTTTGTTGCAGTTGCTTTGGCAGCTGACGAATGGGACGCTGCAGTAGCACCTCCACCGCCGGCACCTGCTGCTGATGGTGCAGCACCTTCCTCCGCTAGTTGGTTTTGAGAGAGATAAAGTTCCCTAACGAATTGTACTCAAATGGATTCATTATTATGAGTTTTCTTGTTTATTTAGGAACGCCACCCCTTCTTTTTTGGTTGGAAAATCGACTCAATTTTTTTCATAGTCCAGTTTTAGATTTTAAGATTGAATTTTCCGACTTCCATTACATCTTTTCGGTATCAGGGTACAATTTTTTTCCTTCTCTTTGAGATATATGAGAAATTAAGTAGTAGACTTCCAAACAAGTAATATATTAATTTTGGGTGGTTGAAGGTCCATGTTTTGTTTGAAAGTTCTGCTGAAGTGAGCCGAACTCGTAGATTTCATCGTCGTGCAATATACGGCCCTGTTTTGGGGAATTCTAAACCTGATGCTTCAACCGTATGTGA

mRNA sequence

CAAAGACATAAACCGACTGGCTCGCGCGCTGCTACAGTGCCCTATGCTTCGCACCCCACATCGTACACCCTCGCGCATAGCATAGGATGTCTGTTCTGGCTTTTGGCAAGGATGGTTCTACAAATGCGCGGAACAATTCGTGCTGGGCACAAGTGGGATGTGATGGTGGATTTGTTTTTCTATCGCGAGCCTGAGGAGGCTAAGGAGCCAGAAGAGGAAGAGGCTCTTCCACCCCCAGATTTTGGCATTGCTGACTATGGTGCTGCTCCACTTGTTGGCTCAGATCAATGGACTGCACAAATTCCTGATGCTCAATGGGGTGCTGCAGATGCAATTCCTGCTGCTGCTGTTCCACCTGCTTCCGGTGTCGAATGGGCACAAGAGCCAGTTGCTTTGGCAGCTGACGAATGGGACGCTGCAGTAGCACCTCCACCGCCGGCACCTGCTGCTGATGGTGCAGCACCTTCCTCCGCTAGTTGGTTTTGAGAGAGATAAAGTTCCCTAACGAATTGTACTCAAATGGATTCATTATTATGAGTTTTCTTGTTTATTTAGGAACGCCACCCCTTCTTTTTTGGTTGGAAAATCGACTCAATTTTTTTCATAGTCCAGTTTTAGATTTTAAGATTGAATTTTCCGACTTCCATTACATCTTTTCGGTATCAGGGTACAATTTTTTTCCTTCTCTTTGAGATATATGAGAAATTAAGTAGTAGACTTCCAAACAAGTAATATATTAATTTTGGGTGGTTGAAGGTCCATGTTTTGTTTGAAAGTTCTGCTGAAGTGAGCCGAACTCGTAGATTTCATCGTCGTGCAATATACGGCCCTGTTTTGGGGAATTCTAAACCTGATGCTTCAACCGTATGTGA

Coding sequence (CDS)

ATGGTTCTACAAATGCGCGGAACAATTCGTGCTGGGCACAAGTGGGATGTGATGGTGGATTTGTTTTTCTATCGCGAGCCTGAGGAGGCTAAGGAGCCAGAAGAGGAAGAGGCTCTTCCACCCCCAGATTTTGGCATTGCTGACTATGGTGCTGCTCCACTTGTTGGCTCAGATCAATGGACTGCACAAATTCCTGATGCTCAATGGGGTGCTGCAGATGCAATTCCTGCTGCTGCTGTTCCACCTGCTTCCGGTGTCGAATGGGCACAAGAGCCAGTTGCTTTGGCAGCTGACGAATGGGACGCTGCAGTAGCACCTCCACCGCCGGCACCTGCTGCTGATGGTGCAGCACCTTCCTCCGCTAGTTGGTTTTGA

Protein sequence

MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPPDFGIADYGAAPLVGSDQWTAQIPDAQWGAADAIPAAAVPPASGVEWAQEPVALAADEWDAAVAPPPPAPAADGAAPSSASWF

Homology

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BLAST of CcUC08G147450 vs. NCBI nr
Match: XP_038886558.1 (40S ribosomal protein SA-like [Benincasa hispida])

HSP 1 Score: 220.3 bits (560), Expect = 9.2e-54
Identity = 114/130 (87.69%), Postives = 116/130 (89.23%), Query Frame = 0


Query: 1   MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPPDFGIADYGAAPLVGSDQW 60
           MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPPDFGIADYGAAPLVG+DQW
Sbjct: 184 MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPPDFGIADYGAAPLVGADQW 243

Query: 61  TAQIPDAQWGAADAIPAAAVPPASGVEWAQEPVALAADEWDAAVAPPPPAPAADGAA--- 120
           TAQIPDAQWGA DA+PAAAVPPAS VEWAQEPVALAAD WDAAV   PP PAADGA    
Sbjct: 244 TAQIPDAQWGAGDAVPAAAVPPASNVEWAQEPVALAADGWDAAV---PPVPAADGAVAAA 303

Query: 121 ---PSSASWF 125
              PSSASWF
Sbjct: 304 PPPPSSASWF 310

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BLAST of CcUC08G147450 vs. NCBI nr
Match: XP_022925394.1 (40S ribosomal protein SA-like [Cucurbita moschata] >XP_022973502.1 40S ribosomal protein SA-like [Cucurbita maxima] >XP_023535006.1 40S ribosomal protein SA-like [Cucurbita pepo subsp. pepo] >KAG6592327.1 40S ribosomal protein SA, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025148.1 40S ribosomal protein SA [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 215.3 bits (547), Expect = 2.9e-52
Identity = 110/125 (88.00%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 1   MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPPDFGIADYGAAPLVGSDQW 60
           MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKE EEEEALPPPDFGIADYGAAPLV SDQW
Sbjct: 184 MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVASDQW 243

Query: 61  TAQIPDAQWGAADAIPAAAVPPASGVEWAQEPVALAADEWDAAVAPPPPA-PAADGAAPS 120
            AQI DAQWGAAD +PA A P AS VEWA EPV LAA+EW+AAVAPPPPA PAADGAAPS
Sbjct: 244 AAQISDAQWGAADVVPAPAAPAASSVEWAPEPVPLAANEWEAAVAPPPPAPPAADGAAPS 303

Query: 121 SASWF 125
           SASWF
Sbjct: 304 SASWF 308

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BLAST of CcUC08G147450 vs. NCBI nr
Match: XP_008463065.1 (PREDICTED: 40S ribosomal protein SA-like [Cucumis melo] >KAA0039133.1 40S ribosomal protein SA-like [Cucumis melo var. makuwa] >TYK26980.1 40S ribosomal protein SA-like [Cucumis melo var. makuwa])

HSP 1 Score: 204.5 bits (519), Expect = 5.2e-49
Identity = 106/125 (84.80%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 1   MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPPDFGIADYGAAPLVGSDQW 60
           MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPP DFGIADY AAPL  SDQW
Sbjct: 184 MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPL-ASDQW 243

Query: 61  TAQIPDAQWGAADAI-PAAAVPPASGVEWAQEPVALAADEWDAAVAPPPPAPAADGAAPS 120
           T+QIPDAQWGAADA+ P AAV PASG EWA EPVAL AD WDAA  PPPPA +ADG AP+
Sbjct: 244 TSQIPDAQWGAADALPPPAAVVPASGAEWAPEPVALTADGWDAAAPPPPPAASADGTAPA 303

Query: 121 SASWF 125
           SASWF
Sbjct: 304 SASWF 307

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BLAST of CcUC08G147450 vs. NCBI nr
Match: XP_004138372.1 (40S ribosomal protein SA [Cucumis sativus] >KGN45883.1 hypothetical protein Csa_005754 [Cucumis sativus])

HSP 1 Score: 202.6 bits (514), Expect = 2.0e-48
Identity = 108/126 (85.71%), Postives = 112/126 (88.89%), Query Frame = 0


Query: 1   MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPPDFGIADYGAAPLVGSDQW 60
           MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPP DFGIADY AAPL  SDQW
Sbjct: 184 MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPLT-SDQW 243

Query: 61  TAQIPDAQWGAADAIPA-AAVPPASGVEWAQEPVALAADEWDAAVA-PPPPAPAADGAAP 120
           T+QIPDAQWGAADAIP+ A V PASG EWA EPVALAAD WDAA A PPPPA +A+G AP
Sbjct: 244 TSQIPDAQWGAADAIPSPAPVVPASGAEWAPEPVALAADGWDAAAAPPPPPAVSAEGTAP 303

Query: 121 SSASWF 125
           SSASWF
Sbjct: 304 SSASWF 308

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BLAST of CcUC08G147450 vs. NCBI nr
Match: XP_022932088.1 (40S ribosomal protein SA-like [Cucurbita moschata] >KAG7037204.1 40S ribosomal protein SA [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200.3 bits (508), Expect = 9.8e-48
Identity = 105/129 (81.40%), Postives = 109/129 (84.50%), Query Frame = 0


Query: 1   MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPPDFGIADYGAAPLVGSDQW 60
           MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKE EEEEALPPPDFGIADYGAAPLV SDQW
Sbjct: 184 MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVASDQW 243

Query: 61  TAQIPDAQWGAAD----AIPAAAVPPASGVEWAQEPVALAADEWDAAVAPPPPAPAADGA 120
           +AQIPDAQWGAAD    A  AAA+PP S VEW  EP ALAAD WDAAVAPP  APA DGA
Sbjct: 244 SAQIPDAQWGAADVVVPAAAAAAIPPPSSVEWTSEPAALAADGWDAAVAPPLSAPAVDGA 303

Query: 121 A-PSSASWF 125
           A PS+  W+
Sbjct: 304 APPSNGGWY 312

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BLAST of CcUC08G147450 vs. ExPASy Swiss-Prot
Match: O80377 (40S ribosomal protein SA OS=Daucus carota OX=4039 GN=179B PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.7e-23
Identity = 69/120 (57.50%), Postives = 80/120 (66.67%), Query Frame = 0


Query: 1   MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPPDFGIADYGAAPLVGSDQW 60
           MVLQMRG I  GHKW+VMVDLFFYREPEE K+ EEE+ LP  D+ +ADY AAP+ G+DQW
Sbjct: 181 MVLQMRGVISQGHKWEVMVDLFFYREPEETKDQEEED-LPVGDY-VADYAAAPIGGADQW 240

Query: 61  TAQIPDAQWGAADAIPAAAVPPASGVEWAQEPVALAADEWDAAVAPP-PPAPAADGAAPS 120
            A IPDAQWG     PA +  PA    W  +   +A D WDAA APP P A   D  AP+
Sbjct: 241 NA-IPDAQWGGDVVQPANSAVPAG--TWT-DAGPIAGDGWDAAAAPPVPGAVGLDVPAPT 294

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BLAST of CcUC08G147450 vs. ExPASy Swiss-Prot
Match: A5BUU4 (40S ribosomal protein SA OS=Vitis vinifera OX=29760 GN=GSVIVT00034021001 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-22
Identity = 69/133 (51.88%), Postives = 76/133 (57.14%), Query Frame = 0


Query: 1   MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPPDFGIADYGAAPL--VGSD 60
           MVLQMR TI  GHKWDVMVDLFFYREPEE KE E +E +  PD+GI DY A  L  +G  
Sbjct: 181 MVLQMRRTIAPGHKWDVMVDLFFYREPEEPKEQEGDEVVAAPDYGITDYQATALGGLGGG 240

Query: 61  QWTAQIPDA-QWGAADAIPAAAVPPASGVEWAQ-----EPVALAADEWDAAVAPP--PPA 120
            W A I DA QWG AD    A +P   G  W         V +A D WDAA APP   P 
Sbjct: 241 DWGAPITDAPQWG-ADVPAVAPIPAVPGSNWGDAAPMPSAVPIATDGWDAAAAPPVAVPP 300

Query: 121 PAADGAAPSSASW 124
           P  +G  P  A W
Sbjct: 301 PVVEG-VPPPAGW 311

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BLAST of CcUC08G147450 vs. ExPASy Swiss-Prot
Match: Q08682 (40S ribosomal protein Sa-1 OS=Arabidopsis thaliana OX=3702 GN=RPSaA PE=1 SV=3)

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-21
Identity = 63/114 (55.26%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 1   MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPPDFGIADYGAAPLVGSDQW 60
           MVLQMRGTI AG KWDVMVDLFFYREPEE K  +E+EA P  ++G        +VG DQW
Sbjct: 185 MVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALPAPEYGMVGGDQW 244

Query: 61  -TAQIPDAQWGAADAIPAAAVPPASGVEWAQEPVALAADEWDAAVAPPPPAPAA 114
            TAQIPDA W      P +A P A+   W+    A A   W+AA APP  APAA
Sbjct: 245 TTAQIPDAAWPGEGQAPISAAPAAA--SWSDSAAAPADGGWEAA-APPSGAPAA 295

[Close]

BLAST of CcUC08G147450 vs. ExPASy Swiss-Prot
Match: O65751 (40S ribosomal protein SA OS=Cicer arietinum OX=3827 GN=RAP40 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.3e-20
Identity = 63/123 (51.22%), Postives = 75/123 (60.98%), Query Frame = 0


Query: 1   MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPPDFGIADYGAAPLVGSDQW 60
           MVLQMRGTIR G KWDVMVDLFFYREPEEAK+PEE+E +  PD+ IAD+  + +    QW
Sbjct: 184 MVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQPEEDE-VAAPDYAIADFNVSAIPSDGQW 243

Query: 61  TAQIPDAQWGAADAIPAAAVPPASGVEWAQEPVALAADEWDAAVAPPPPAPAADGAAPSS 120
            A I D  W   DA+P   +P    V WA  P A+A D W  AV PP   P A   +  +
Sbjct: 244 PAAI-DQPWN--DAVP-QPIPAVPAVNWA-APEAVAGD-WGEAVPPPQQIPTAGIESVPA 299

Query: 121 ASW 124
             W
Sbjct: 304 TGW 299

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BLAST of CcUC08G147450 vs. ExPASy Swiss-Prot
Match: O22518 (40S ribosomal protein SA OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 6.9e-20
Identity = 60/113 (53.10%), Postives = 68/113 (60.18%), Query Frame = 0


Query: 1   MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPPDFGIADYGAAPLVGSDQW 60
           MVLQMRGTIR G KWDVMVDLFFYREPEEAK+ EEEEA P  D+ I D+ A  +    QW
Sbjct: 188 MVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEA-PAVDYAITDFNAGAIAADGQW 247

Query: 61  TAQIPDAQWGAADAIPAAAVPPASGVEWA--QEPVALAADEWDAAVAPPPPAP 112
              I D  W  +DA+P   +P   GV W    E  A A  +W  AV PP   P
Sbjct: 248 PGTI-DQSW--SDAVP-QPIPAVPGVNWGAPAEAPAAAGGDWGEAVPPPQQIP 295

[Close]

BLAST of CcUC08G147450 vs. ExPASy TrEMBL
Match: A0A6J1I7P9 (40S ribosomal protein SA OS=Cucurbita maxima OX=3661 GN=LOC111472042 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.4e-52
Identity = 110/125 (88.00%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 1   MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPPDFGIADYGAAPLVGSDQW 60
           MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKE EEEEALPPPDFGIADYGAAPLV SDQW
Sbjct: 184 MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVASDQW 243

Query: 61  TAQIPDAQWGAADAIPAAAVPPASGVEWAQEPVALAADEWDAAVAPPPPA-PAADGAAPS 120
            AQI DAQWGAAD +PA A P AS VEWA EPV LAA+EW+AAVAPPPPA PAADGAAPS
Sbjct: 244 AAQISDAQWGAADVVPAPAAPAASSVEWAPEPVPLAANEWEAAVAPPPPAPPAADGAAPS 303

Query: 121 SASWF 125
           SASWF
Sbjct: 304 SASWF 308

[Close]

BLAST of CcUC08G147450 vs. ExPASy TrEMBL
Match: A0A6J1EC15 (40S ribosomal protein SA OS=Cucurbita moschata OX=3662 GN=LOC111432696 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.4e-52
Identity = 110/125 (88.00%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 1   MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPPDFGIADYGAAPLVGSDQW 60
           MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKE EEEEALPPPDFGIADYGAAPLV SDQW
Sbjct: 184 MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVASDQW 243

Query: 61  TAQIPDAQWGAADAIPAAAVPPASGVEWAQEPVALAADEWDAAVAPPPPA-PAADGAAPS 120
            AQI DAQWGAAD +PA A P AS VEWA EPV LAA+EW+AAVAPPPPA PAADGAAPS
Sbjct: 244 AAQISDAQWGAADVVPAPAAPAASSVEWAPEPVPLAANEWEAAVAPPPPAPPAADGAAPS 303

Query: 121 SASWF 125
           SASWF
Sbjct: 304 SASWF 308

[Close]

BLAST of CcUC08G147450 vs. ExPASy TrEMBL
Match: A0A5D3DUK0 (40S ribosomal protein SA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00510 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.5e-49
Identity = 106/125 (84.80%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 1   MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPPDFGIADYGAAPLVGSDQW 60
           MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPP DFGIADY AAPL  SDQW
Sbjct: 184 MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPL-ASDQW 243

Query: 61  TAQIPDAQWGAADAI-PAAAVPPASGVEWAQEPVALAADEWDAAVAPPPPAPAADGAAPS 120
           T+QIPDAQWGAADA+ P AAV PASG EWA EPVAL AD WDAA  PPPPA +ADG AP+
Sbjct: 244 TSQIPDAQWGAADALPPPAAVVPASGAEWAPEPVALTADGWDAAAPPPPPAASADGTAPA 303

Query: 121 SASWF 125
           SASWF
Sbjct: 304 SASWF 307

[Close]

BLAST of CcUC08G147450 vs. ExPASy TrEMBL
Match: A0A1S3CJX7 (40S ribosomal protein SA OS=Cucumis melo OX=3656 GN=LOC103501303 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.5e-49
Identity = 106/125 (84.80%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 1   MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPPDFGIADYGAAPLVGSDQW 60
           MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPP DFGIADY AAPL  SDQW
Sbjct: 184 MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPL-ASDQW 243

Query: 61  TAQIPDAQWGAADAI-PAAAVPPASGVEWAQEPVALAADEWDAAVAPPPPAPAADGAAPS 120
           T+QIPDAQWGAADA+ P AAV PASG EWA EPVAL AD WDAA  PPPPA +ADG AP+
Sbjct: 244 TSQIPDAQWGAADALPPPAAVVPASGAEWAPEPVALTADGWDAAAPPPPPAASADGTAPA 303

Query: 121 SASWF 125
           SASWF
Sbjct: 304 SASWF 307

[Close]

BLAST of CcUC08G147450 vs. ExPASy TrEMBL
Match: A0A0A0K8X1 (40S ribosomal protein SA OS=Cucumis sativus OX=3659 GN=Csa_6G016990 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 9.6e-49
Identity = 108/126 (85.71%), Postives = 112/126 (88.89%), Query Frame = 0


Query: 1   MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPPDFGIADYGAAPLVGSDQW 60
           MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPP DFGIADY AAPL  SDQW
Sbjct: 184 MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPLT-SDQW 243

Query: 61  TAQIPDAQWGAADAIPA-AAVPPASGVEWAQEPVALAADEWDAAVA-PPPPAPAADGAAP 120
           T+QIPDAQWGAADAIP+ A V PASG EWA EPVALAAD WDAA A PPPPA +A+G AP
Sbjct: 244 TSQIPDAQWGAADAIPSPAPVVPASGAEWAPEPVALAADGWDAAAAPPPPPAVSAEGTAP 303

Query: 121 SSASWF 125
           SSASWF
Sbjct: 304 SSASWF 308

[Close]

BLAST of CcUC08G147450 vs. TAIR 10
Match: AT1G72370.1 (40s ribosomal protein SA )

HSP 1 Score: 104.0 bits (258), Expect = 8.9e-23
Identity = 63/114 (55.26%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 1   MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPPDFGIADYGAAPLVGSDQW 60
           MVLQMRGTI AG KWDVMVDLFFYREPEE K  +E+EA P  ++G        +VG DQW
Sbjct: 185 MVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALPAPEYGMVGGDQW 244

Query: 61  -TAQIPDAQWGAADAIPAAAVPPASGVEWAQEPVALAADEWDAAVAPPPPAPAA 114
            TAQIPDA W      P +A P A+   W+    A A   W+AA APP  APAA
Sbjct: 245 TTAQIPDAAWPGEGQAPISAAPAAA--SWSDSAAAPADGGWEAA-APPSGAPAA 295

[Close]

BLAST of CcUC08G147450 vs. TAIR 10
Match: AT1G72370.2 (40s ribosomal protein SA )

HSP 1 Score: 99.4 bits (246), Expect = 2.2e-21
Identity = 62/114 (54.39%), Postives = 71/114 (62.28%), Query Frame = 0


Query: 1   MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPPDFGIADYGAAPLVGSDQW 60
           MVLQMRGTI AG KWDVMVDLFFYREPEE K  +E+EA P  ++G        +VG DQW
Sbjct: 185 MVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALPAPEYGMVGGDQW 244

Query: 61  -TAQIPDAQWGAADAIPAAAVPPASGVEWAQEPVALAADEWDAAVAPPPPAPAA 114
            TAQIPDA W      P +A P A+   W+      A   W+AA APP  APAA
Sbjct: 245 TTAQIPDAAWPGEGQAPISAAPAAA--SWSDS----ADGGWEAA-APPSGAPAA 291

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BLAST of CcUC08G147450 vs. TAIR 10
Match: AT3G04770.2 (40s ribosomal protein SA B )

HSP 1 Score: 87.4 bits (215), Expect = 8.6e-18
Identity = 55/100 (55.00%), Postives = 60/100 (60.00%), Query Frame = 0


Query: 1   MVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPPDFGIADYGAAPLVGSDQW 60
           MVLQMRGTI A  KWDVMVDLFFYREPEEAK+  +EEA    D+G        +VG DQW
Sbjct: 186 MVLQMRGTILAAQKWDVMVDLFFYREPEEAKQEGDEEAEVQADYG--------MVGGDQW 245

Query: 61  -TAQIPDAQWGA-----ADAIPAAAVPPASGVEWAQEPVA 95
            TAQI DA W         A PA  V  A+G E A  P A
Sbjct: 246 TTAQISDAAWSGEVEQPISAAPAVGVTVAAGWEAASVPAA 277

The following BLAST results are available for this feature:

BLAST of CcUC08G147450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886558.1	9.2e-54	87.69	40S ribosomal protein SA-like [Benincasa hispida]	[more]
XP_022925394.1	2.9e-52	88.00	40S ribosomal protein SA-like [Cucurbita moschata] >XP_022973502.1 40S ribosomal...	[more]
XP_008463065.1	5.2e-49	84.80	PREDICTED: 40S ribosomal protein SA-like [Cucumis melo] >KAA0039133.1 40S riboso...	[more]
XP_004138372.1	2.0e-48	85.71	40S ribosomal protein SA [Cucumis sativus] >KGN45883.1 hypothetical protein Csa_...	[more]
XP_022932088.1	9.8e-48	81.40	40S ribosomal protein SA-like [Cucurbita moschata] >KAG7037204.1 40S ribosomal p...	[more]

BLAST of CcUC08G147450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80377	6.7e-23	57.50	40S ribosomal protein SA OS=Daucus carota OX=4039 GN=179B PE=2 SV=1	[more]
A5BUU4	1.5e-22	51.88	40S ribosomal protein SA OS=Vitis vinifera OX=29760 GN=GSVIVT00034021001 PE=3 SV...	[more]
Q08682	1.3e-21	55.26	40S ribosomal protein Sa-1 OS=Arabidopsis thaliana OX=3702 GN=RPSaA PE=1 SV=3	[more]
O65751	5.3e-20	51.22	40S ribosomal protein SA OS=Cicer arietinum OX=3827 GN=RAP40 PE=2 SV=1	[more]
O22518	6.9e-20	53.10	40S ribosomal protein SA OS=Glycine max OX=3847 PE=2 SV=1	[more]

BLAST of CcUC08G147450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I7P9	1.4e-52	88.00	40S ribosomal protein SA OS=Cucurbita maxima OX=3661 GN=LOC111472042 PE=3 SV=1	[more]
A0A6J1EC15	1.4e-52	88.00	40S ribosomal protein SA OS=Cucurbita moschata OX=3662 GN=LOC111432696 PE=3 SV=1	[more]
A0A5D3DUK0	2.5e-49	84.80	40S ribosomal protein SA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CJX7	2.5e-49	84.80	40S ribosomal protein SA OS=Cucumis melo OX=3656 GN=LOC103501303 PE=3 SV=1	[more]
A0A0A0K8X1	9.6e-49	85.71	40S ribosomal protein SA OS=Cucumis sativus OX=3659 GN=Csa_6G016990 PE=3 SV=1	[more]

BLAST of CcUC08G147450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72370.1	8.9e-23	55.26	40s ribosomal protein SA	[more]
AT1G72370.2	2.2e-21	54.39	40s ribosomal protein SA	[more]
AT3G04770.2	8.6e-18	55.00	40s ribosomal protein SA B	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.10490		coord: 1..39 e-value: 9.2E-9 score: 36.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..124
None	No IPR available	PANTHER	PTHR11489:SF24	40S RIBOSOMAL PROTEIN SA	coord: 1..118
IPR005707	Ribosomal protein S2, eukaryotic/archaeal	PANTHER	PTHR11489	40S RIBOSOMAL PROTEIN SA	coord: 1..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC08G147450.1	CcUC08G147450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome