CcUC07G142580 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC07G142580
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Hydrolase_4 domain-containing protein
Location	CicolChr07: 28697912 .. 28698300 (-)
RNA-Seq Expression	CcUC07G142580
Synteny	CcUC07G142580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTTTATCACCATCATTTCTTCTACTACACTAACACTAAATCCCAACAGCCACACATAAATAAGAGGCAGAAAAAATAGACTACTGACCTAATGTGTTTGTCTTGCAGGGGACCAGCTGATGAAGTTGTTGATTGGTCCTTTGTAAGCAAAAGTATGAACCTCTTTGGCTAAGTGGAGGTGGGCACTGCAATCTTGACCTCTACCCTGAGTTCATTAAACATTTAAAGAAATTTGTACAGTCACTTGGAAAATCAAAAGCATCAACTAATGGTTCGGAGAAAGCTAAAGTAGAAATTGACAATCACAACAAACCATCTGAAACTGGGCCTTCAGATACGTTCGAATTGACTGACAATCTTCTCGAAGTTCCTCGAAACAGTTTA

mRNA sequence

ATGGAGGGACCAGCTGATGAAGTTGTTGATTGGTCCTTTTCACTTGGAAAATCAAAAGCATCAACTAATGGTTCGGAGAAAGCTAAAGTAGAAATTGACAATCACAACAAACCATCTGAAACTGGGCCTTCAGATACGTTCGAATTGACTGACAATCTTCTCGAAGTTCCTCGAAACAGTTTA

Coding sequence (CDS)

ATGGAGGGACCAGCTGATGAAGTTGTTGATTGGTCCTTTTCACTTGGAAAATCAAAAGCATCAACTAATGGTTCGGAGAAAGCTAAAGTAGAAATTGACAATCACAACAAACCATCTGAAACTGGGCCTTCAGATACGTTCGAATTGACTGACAATCTTCTCGAAGTTCCTCGAAACAGTTTA

Protein sequence

MEGPADEVVDWSFSLGKSKASTNGSEKAKVEIDNHNKPSETGPSDTFELTDNLLEVPRNSL

Homology

[Close]

BLAST of CcUC07G142580 vs. NCBI nr
Match: XP_038894096.1 (alpha/beta hydrolase domain-containing protein 17B [Benincasa hispida])

HSP 1 Score: 82.0 bits (201), Expect = 1.9e-12
Identity = 43/48 (89.58%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 14  SLGKSKASTNGSEKAKVEIDNHNKPSETGPSDTFELTDNLLEVPRNSL 62
           SLGKSKASTNGSEKAKVEIDN NKPSETGPSDTFEL  NL EV RNSL
Sbjct: 261 SLGKSKASTNGSEKAKVEIDNQNKPSETGPSDTFELAANLPEVSRNSL 308

[Close]

BLAST of CcUC07G142580 vs. NCBI nr
Match: XP_008444091.1 (PREDICTED: protein ABHD17B isoform X1 [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 7.3e-12
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 14  SLGKSKASTNGSEKAKVEIDNHNKPSETGPSDTFELTDNLLEVPRNSL 62
           SLGKSKASTNGSEKAKVEIDN NKPSETGPSDTFEL  +L EV RNSL
Sbjct: 261 SLGKSKASTNGSEKAKVEIDNQNKPSETGPSDTFELAADLPEVSRNSL 308

[Close]

BLAST of CcUC07G142580 vs. NCBI nr
Match: XP_011653830.1 (alpha/beta hydrolase domain-containing protein 17B [Cucumis sativus] >KGN54629.1 hypothetical protein Csa_012922 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 7.3e-12
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 14  SLGKSKASTNGSEKAKVEIDNHNKPSETGPSDTFELTDNLLEVPRNSL 62
           SLGKSKASTNGSEKAKVEIDN NKPSETGPSDTFEL  +L EV RNSL
Sbjct: 261 SLGKSKASTNGSEKAKVEIDNQNKPSETGPSDTFELAADLPEVSRNSL 308

[Close]

BLAST of CcUC07G142580 vs. NCBI nr
Match: XP_022148153.1 (protein ABHD17C-like, partial [Momordica charantia])

HSP 1 Score: 75.5 bits (184), Expect = 1.8e-10
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 14  SLGKSKASTNGSEKAKVEIDNHNKPSETGPSDTFELTDNLLEVPRNSL 62
           SLGKSKASTNGSEK+KVEID+ NKPSE+GPSDTFEL  +L EV RNSL
Sbjct: 162 SLGKSKASTNGSEKSKVEIDSRNKPSESGPSDTFELAADLPEVSRNSL 209

[Close]

BLAST of CcUC07G142580 vs. NCBI nr
Match: XP_022998218.1 (protein ABHD17B-like [Cucurbita maxima])

HSP 1 Score: 73.6 bits (179), Expect = 6.8e-10
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 14  SLGKSKASTNGSEKAKVEIDNHNKPSETGPSDTFELTDNLLEVPRNSL 62
           SLGKSKASTN SEKAKVEID+  KPSETGPSDTFEL  +L EV RNSL
Sbjct: 261 SLGKSKASTNASEKAKVEIDSQKKPSETGPSDTFELAADLPEVSRNSL 308

[Close]

BLAST of CcUC07G142580 vs. ExPASy TrEMBL
Match: A0A0A0L0Q0 (Hydrolase_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G410820 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.5e-12
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 14  SLGKSKASTNGSEKAKVEIDNHNKPSETGPSDTFELTDNLLEVPRNSL 62
           SLGKSKASTNGSEKAKVEIDN NKPSETGPSDTFEL  +L EV RNSL
Sbjct: 261 SLGKSKASTNGSEKAKVEIDNQNKPSETGPSDTFELAADLPEVSRNSL 308

[Close]

BLAST of CcUC07G142580 vs. ExPASy TrEMBL
Match: A0A1S3B9L7 (protein ABHD17B isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487530 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.5e-12
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 14  SLGKSKASTNGSEKAKVEIDNHNKPSETGPSDTFELTDNLLEVPRNSL 62
           SLGKSKASTNGSEKAKVEIDN NKPSETGPSDTFEL  +L EV RNSL
Sbjct: 261 SLGKSKASTNGSEKAKVEIDNQNKPSETGPSDTFELAADLPEVSRNSL 308

[Close]

BLAST of CcUC07G142580 vs. ExPASy TrEMBL
Match: A0A6J1D3A8 (protein ABHD17C-like OS=Momordica charantia OX=3673 GN=LOC111016899 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.7e-11
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 14  SLGKSKASTNGSEKAKVEIDNHNKPSETGPSDTFELTDNLLEVPRNSL 62
           SLGKSKASTNGSEK+KVEID+ NKPSE+GPSDTFEL  +L EV RNSL
Sbjct: 162 SLGKSKASTNGSEKSKVEIDSRNKPSESGPSDTFELAADLPEVSRNSL 209

[Close]

BLAST of CcUC07G142580 vs. ExPASy TrEMBL
Match: A0A6J1KG55 (protein ABHD17B-like OS=Cucurbita maxima OX=3661 GN=LOC111492933 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.3e-10
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 14  SLGKSKASTNGSEKAKVEIDNHNKPSETGPSDTFELTDNLLEVPRNSL 62
           SLGKSKASTN SEKAKVEID+  KPSETGPSDTFEL  +L EV RNSL
Sbjct: 261 SLGKSKASTNASEKAKVEIDSQKKPSETGPSDTFELAADLPEVSRNSL 308

[Close]

BLAST of CcUC07G142580 vs. ExPASy TrEMBL
Match: A0A6J1IX62 (protein ABHD17B-like OS=Cucurbita maxima OX=3661 GN=LOC111479968 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-09
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 14  SLGKSKASTNGSEKAKVEIDNHNKPSETGPSDTFELTDNLLEVPRNSL 62
           SLGKSKASTNGSEKAKVE DN NKPSETG SDTF++  ++ EV RNSL
Sbjct: 261 SLGKSKASTNGSEKAKVETDNQNKPSETGSSDTFKMVADVPEVSRNSL 308

The following BLAST results are available for this feature:

BLAST of CcUC07G142580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894096.1	1.9e-12	89.58	alpha/beta hydrolase domain-containing protein 17B [Benincasa hispida]	[more]
XP_008444091.1	7.3e-12	87.50	PREDICTED: protein ABHD17B isoform X1 [Cucumis melo]	[more]
XP_011653830.1	7.3e-12	87.50	alpha/beta hydrolase domain-containing protein 17B [Cucumis sativus] >KGN54629.1...	[more]
XP_022148153.1	1.8e-10	81.25	protein ABHD17C-like, partial [Momordica charantia]	[more]
XP_022998218.1	6.8e-10	81.25	protein ABHD17B-like [Cucurbita maxima]	[more]

BLAST of CcUC07G142580 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC07G142580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0Q0	3.5e-12	87.50	Hydrolase_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G410820...	[more]
A0A1S3B9L7	3.5e-12	87.50	protein ABHD17B isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487530 PE=4 SV=1	[more]
A0A6J1D3A8	8.7e-11	81.25	protein ABHD17C-like OS=Momordica charantia OX=3673 GN=LOC111016899 PE=4 SV=1	[more]
A0A6J1KG55	3.3e-10	81.25	protein ABHD17B-like OS=Cucurbita maxima OX=3661 GN=LOC111492933 PE=4 SV=1	[more]
A0A6J1IX62	1.3e-09	77.08	protein ABHD17B-like OS=Cucurbita maxima OX=3661 GN=LOC111479968 PE=4 SV=1	[more]

BLAST of CcUC07G142580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC07G142580.1	CcUC07G142580.1	mRNA