CcUC07G141940 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC07G141940
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	SPla/RYanodine receptor (SPRY) domain-containing protein
Location	CicolChr07: 28170130 .. 28172344 (-)
RNA-Seq Expression	CcUC07G141940
Synteny	CcUC07G141940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAATTCATATTTAAAATACATTTGAAACCAAGACATTTATACATCAAGGTAGCTTATTCTAAGTTCATAAGATTAAACATCTTAACAAAATTGTTGATCATAAAGAGTAAAGATGAGGAGGAAGTCTTGGCTGAGCAACTGCATGAAGGGGGTATTTCTTAGGAGTGGAAAGACCAAAAATTTCTTCCATATTCAAATCTTCCTTCTCCATATCCCCAGGCAATTTCCAAGAAAACCCATGCAATAAATTAGCCAGACTTGACTGAATAACTTTGAGACCAAGGCTATAACCAGGGCACATCCTCCTCCCAGACCCAAATGGCAGAAGCTCAAAGTCTTGGCCTTTCACATCAATGCTATTCTCCATGAACCTTTCTGGGTAAAATGCATGTGGGTTTTTCCATACTGTTGGGTCTCTCCCAATTGTCCACACATTCACAAGTACTCTGGTGCCTTTGGCTATGTCATAACCTGCAATTTGGCAATCCTCTCTACACATTCTAGGCACTAACATTGGTGCTACAGGGTGTAATCTCATTGTCTCGTTCGCAATTGCATTAATGTATGGTAACTTCATAATGTCCTTCTCTTCTACCCATCTTTCCCTTCCTATCACTCTATCAAGCTCTTCAATTGCCTTGTTGAAGATTTCTGGATTTTTCAAAAGTTCTGATATTGCCCACTCCACTGTCACTGCTGAACTCTCTGTTCCTCCTGCTATTAGATCCTAAAATAATGAAAGATTGATTGTAAGTTAACAACTTTCCATTTTAAATCTAATTTTTCAAAAAATTTTAATTAGTTAAGAGTCTAATTAGACATAAGATTGAGAGGGTAGGGACTTTGTTAATCATCTTTTAAGATTATGAATACATTAGAAACAAAATAAAACCTATTAGATATTTATTAAGGTTAGCGACCTTCTTGTTGCAACTTAGCACTGAATTGAGTTGATAATTCAAGCTTATTAAGTTATTATTTGGTTTTTAGTTTTTGAAAATTAAGCCTAAAAAAATTATTCTTAAAAATTTGCTTTTGTTTTTTGAATTTGACTAAAAATCCATGGTAAAACACGTTAAGAAATAGTTTGAAATCACATTTTGACATTTTCAAAGTCACTATAAAATACTTGTTAATCTTTCAAAACTAATTTTAATATTTGAAAATTACATTTAAGAGTTTAATATTTTATATTTTATATATTTTAAGTGATTCAAATCATATGTTAGAGTAATTTTAAACATAACAAAAGTGATTTTTATCATTTTAAAATCAATAAAAAAAATATGACAGCTAATGTTTTGAAAAAATTTGTAAACAAAGAGGGGATTACCTGAGTAAACGCCTTGACTCCGTGCCTCTCAAGTTTGACTTCAAGATCAGGATCGTCAGCCAACTGCAACAAAACATCCACCATATCCTTAGCAACATAATCCTTAACTCCCTTTCTCCTTTCATTATGTTCATCCAACACATGTTCAAGAAACCTATCAAACTTCTTGCTCAACGCCTTCATTCTCTTCACATACCCTTGCAAATCCAAGAAATCAATCCATGGAATCGAATCCCCAATGTTAAGCACACCACTCAGCAAGAACAACTCATCCAACATTTTCTTGAACTCATCTGGACTAACAATGGCGTTTTCTGACTCATCGGTATACTTCTTTCCCAACACCATCCGACTTATTACATTCAAACTCACTGTAGACAAGTGATCTTTAAGCTTCATCACTTCACCACAAGAGTTGTAAATATCTTTAAGCAGAGCATTCATTTCTTCCTTGCGTATATACTCATAAGAATCAAGTCGTCTAGCACTGAAAAGCTCCATCAAACACATCTTGCGAGCTTGGCGCCAATAAGGGCCGTATTGCGACCAAGTAATGTCGGAATAGTTATAGGTGGTGTACTTTCCAGCGGCGGTTTTGGGGCGGGACACGAAGTTGAGATCATGGGTTTTGAGGATAAGCTTAGCCATCTCAACAGAGGATCCGACCACAACAGGGAATGATCCGAAACGAAGATGCATAATGGGGCCATATTTTTTGGAGAGCTGATGAATAGATTGGTGGGGCAGAGACCCAATTAAGTCCAGATTTCCGATCAAGGGCCATGGCTTTGGTCCGGGCGGGAGATTGAGCTTGCGGTGGCGGAGGCGGCGGGAGAGGAGGAGGAGGGCCAGAGTGGCAATCCAAGCAACTGCATAA

mRNA sequence

ATGAGCACTAACATTGGTGCTACAGGGTGTAATCTCATTGTCTCGTTCGCAATTGCATTAATGATCGTCAGCCAACTGCAACAAAACATCCACCATATCCTTAGCAACATAATCCTTAACTCCCTTTCTCCTTTCATTATGTTCATCCAACACATGTTCAAGAAACCTATCAAACTTCTTGCTCAACGCCTTCATTCTCTTCACATACCCTTGCAAATCCAAGAAATCAATCCATGGAATCGAATCCCCAATGTTAAGCACACCACTCAGCAAGAACAACTCATCCAACATTTTCTTGAACTCATCTGGACTAACAATGGCAGCATTCATTTCTTCCTTGCGTATATACTCATAAGAATCAAGTCGTCTAGCACTGAAAAGCTCCATCAAACACATCTTGCGAGCTTGGCGCCAATAAGGGCCGTATTGCGACCAAGTAATGTCGGAATAGTTATAGGTGGTGTACTTTCCAGCGGCGGTTTTGGGGCGGGACACGAAGTTGAGATCATGGATTGGTGGGGCAGAGACCCAATTAAGTCCAGATTTCCGATCAAGGGCCATGGCTTTGGTCCGGGCGGGAGATTGAGCTTGCGGTGGCGGAGGCGGCGGGAGAGGAGGAGGAGGGCCAGAGTGGCAATCCAAGCAACTGCATAA

Coding sequence (CDS)

ATGAGCACTAACATTGGTGCTACAGGGTGTAATCTCATTGTCTCGTTCGCAATTGCATTAATGATCGTCAGCCAACTGCAACAAAACATCCACCATATCCTTAGCAACATAATCCTTAACTCCCTTTCTCCTTTCATTATGTTCATCCAACACATGTTCAAGAAACCTATCAAACTTCTTGCTCAACGCCTTCATTCTCTTCACATACCCTTGCAAATCCAAGAAATCAATCCATGGAATCGAATCCCCAATGTTAAGCACACCACTCAGCAAGAACAACTCATCCAACATTTTCTTGAACTCATCTGGACTAACAATGGCAGCATTCATTTCTTCCTTGCGTATATACTCATAAGAATCAAGTCGTCTAGCACTGAAAAGCTCCATCAAACACATCTTGCGAGCTTGGCGCCAATAAGGGCCGTATTGCGACCAAGTAATGTCGGAATAGTTATAGGTGGTGTACTTTCCAGCGGCGGTTTTGGGGCGGGACACGAAGTTGAGATCATGGATTGGTGGGGCAGAGACCCAATTAAGTCCAGATTTCCGATCAAGGGCCATGGCTTTGGTCCGGGCGGGAGATTGAGCTTGCGGTGGCGGAGGCGGCGGGAGAGGAGGAGGAGGGCCAGAGTGGCAATCCAAGCAACTGCATAA

Protein sequence

MSTNIGATGCNLIVSFAIALMIVSQLQQNIHHILSNIILNSLSPFIMFIQHMFKKPIKLLAQRLHSLHIPLQIQEINPWNRIPNVKHTTQQEQLIQHFLELIWTNNGSIHFFLAYILIRIKSSSTEKLHQTHLASLAPIRAVLRPSNVGIVIGGVLSSGGFGAGHEVEIMDWWGRDPIKSRFPIKGHGFGPGGRLSLRWRRRRERRRRARVAIQATA

Homology

[Close]

BLAST of CcUC07G141940 vs. NCBI nr
Match: KAF7058924.1 (hypothetical protein CFC21_065892 [Triticum aestivum])

HSP 1 Score: 87.0 bits (214), Expect = 2.1e-13
Identity = 56/198 (28.28%), Postives = 96/198 (48.48%), Query Frame = 0


Query: 22  IVSQLQQNIHHILSNIILN-SLSPFIMFIQHMFKKPIKLLAQRLHSLHIPLQIQEINPWN 81
           I  +LQQ++HH+L +  L  + +P  + +  + ++P++ LAQ LH L +PLQ+  + P +
Sbjct: 68  IAGELQQHVHHVLHHEALPLAPTPLAVLVHDVLQEPVEHLAQLLHPLDVPLQVHPVQPRD 127

Query: 82  RIPNVKHTTQQEQLIQHFLEL----------------------------IWTNNGSI--- 141
            + +V+H  +QEQL+ H LEL                            +  + G +   
Sbjct: 128 GVADVEHAVEQEQLVDHPLELLGRRDHRPGLVPHLLLQVLLAHHHARDHVQAHRGQVVLE 187

Query: 142 -----------------HFFLAYILIRIKSSSTEKLHQTHLASLAPIRAVLRPSNVGIVI 171
                            H   A +L+R+++   E+L + HLA LAP+ AV  P +V +V+
Sbjct: 188 HHHAACAAAVQVAEEGEHLLPADVLVRLEALGAEELGEAHLAGLAPVGAVGGPGDVAVVV 247

[Close]

BLAST of CcUC07G141940 vs. NCBI nr
Match: KAF7072516.1 (hypothetical protein CFC21_077626 [Triticum aestivum])

HSP 1 Score: 85.5 bits (210), Expect = 6.2e-13
Identity = 58/210 (27.62%), Postives = 99/210 (47.14%), Query Frame = 0


Query: 12  LIVSFAIALMIVSQLQQNIHHILSNIILNSL-SPFIMFIQHMFKKPIKLLAQRLHSLHIP 71
           L V   +   I  +LQQ++HH+L +  L  + +P  + +  + ++P++ LAQ LH L +P
Sbjct: 58  LSVELDLETGIAGELQQHVHHVLDHEALPLVPTPLAVLVHDVLQEPVEHLAQLLHPLDVP 117

Query: 72  LQIQEINPWNRIPNVKHTTQQEQLIQHFLEL----------------------------I 131
           LQ+  + P + + +V+H  +QEQL+ H LEL                            +
Sbjct: 118 LQVHPVEPRDGVADVEHAVEQEQLVDHPLELLRRRDHRPCLVPHLLLQVLLAHHHARDHV 177

Query: 132 WTNNGSI----------------------HFFLAYILIRIKSSSTEKLHQTHLASLAPIR 171
             + G +                      H   A +L+R+++   E+L + HLA LAP+ 
Sbjct: 178 QAHRGQVVLEHHHAAGTGAAAVQVAEEGEHLLPADVLVRLEALGAEELGEAHLAGLAPVG 237

[Close]

BLAST of CcUC07G141940 vs. NCBI nr
Match: GER37865.1 (SPla/RYanodine receptor (SPRY) domain-containing protein, partial [Striga asiatica])

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-09
Identity = 65/247 (26.32%), Postives = 105/247 (42.51%), Query Frame = 0


Query: 18  IALMIVSQLQQNIHHILSNIILNSLSPFIMFIQHMFKKPIKLLAQRLHSLHIPLQIQEIN 77
           + + ++ + QQ+IHH+     L S +     I H+ K+P+ L  + LH L++PL+I++I 
Sbjct: 152 VGIRVLCKPQQHIHHVFLRRPLLSHT----IINHVTKEPVDLPLKTLHLLNVPLKIKKIE 211

Query: 78  PWNRIPNVKHTTQQEQLIQHFLELIWTNNGSIHFFLA----------------------- 137
           P + I ++ HTTQ+E L+Q  L+L+  +   +  FLA                       
Sbjct: 212 PRHPITDIHHTTQKEPLVQKPLQLVERHTRPLEDFLAHEHAACGRESHDGLARLGKQSGD 271

Query: 138 --------YILIRIKSSSTEKLHQTHLASLAPIRAVLRPSNV-----------------G 197
                   ++L R+++   E L +     L+P+ AV  P +V                  
Sbjct: 272 EIGPLVRPHVLERVEALGVENLREVDFTGLSPLWAVWGPRHVRETYFPADSGGREAKTAS 331

Query: 198 IVIGGVLSSGGFGAG----------------HEVEIMDWWGRDPIKSRFPIKGHGFGPGG 201
            V+   L+  G  A                  + E  D  G  P++ R PI GHGFGPGG
Sbjct: 332 WVLRNCLAMSGDEATTTGDFPNFRSISSPYFRDREWRDMCGTGPMRWRLPITGHGFGPGG 391

[Close]

BLAST of CcUC07G141940 vs. NCBI nr
Match: PKI74270.1 (hypothetical protein CRG98_005327 [Punica granatum])

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-05
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 170 MDWWGRDPIKSRFPIKGHGFGPGGRLSLRWR-RRRERRRRARVAIQA 216
           M+WWG  PI+ RFP+ G GFGPGG+LS R R +RRERR RARVA  A
Sbjct: 1   MEWWGSGPIRLRFPMMGQGFGPGGKLSCRPRQKRRERRMRARVASHA 47

[Close]

BLAST of CcUC07G141940 vs. NCBI nr
Match: ACN29026.1 (unknown [Zea mays])

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-04
Identity = 47/198 (23.74%), Postives = 81/198 (40.91%), Query Frame = 0


Query: 22  IVSQLQQNIHHILSN-IILNSLSPFIMFIQHMFKKPIKLLAQRLHSLHIPLQIQEINPWN 81
           +V +LQQ +HH+  +        P ++ + H+ ++ I+ LAQ LH   + L++Q   P +
Sbjct: 255 VVGELQQQVHHVRGDEPAALPPPPLVVLVHHVLQEAIEHLAQPLHPPDVALEVQPAEPRD 314

Query: 82  RIPNVKHTTQQEQLIQHFLEL---------------------------------IWTNNG 141
            +P+ +H  ++E+L+ H  EL                                 +   +G
Sbjct: 315 EVPDAEHAVEEEELVDHPAELGRRDRRARGAALADVLPAQRHARDHVEAVHEQVLLERDG 374

Query: 142 -------------------SIHFFLAYILIRIKSSSTEKLHQTHLASLAPIRAVLRPSNV 167
                                    A +L+R +    E++    LA LAP+R   RP +V
Sbjct: 375 PPAAPGRARGGRRRQGAQQDAQLLAADVLLRPELPVAEQMGLPELARLAPVRPAGRPDDV 434

[Close]

BLAST of CcUC07G141940 vs. ExPASy TrEMBL
Match: A0A3B6KG49 (Uncharacterized protein OS=Triticum aestivum OX=4565 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-13
Identity = 56/198 (28.28%), Postives = 96/198 (48.48%), Query Frame = 0


Query: 22  IVSQLQQNIHHILSNIILN-SLSPFIMFIQHMFKKPIKLLAQRLHSLHIPLQIQEINPWN 81
           I  +LQQ++HH+L +  L  + +P  + +  + ++P++ LAQ LH L +PLQ+  + P +
Sbjct: 68  IAGELQQHVHHVLHHEALPLAPTPLAVLVHDVLQEPVEHLAQLLHPLDVPLQVHPVQPRD 127

Query: 82  RIPNVKHTTQQEQLIQHFLEL----------------------------IWTNNGSI--- 141
            + +V+H  +QEQL+ H LEL                            +  + G +   
Sbjct: 128 GVADVEHAVEQEQLVDHPLELLGRRDHRPGLVPHLLLQVLLAHHHARDHVQAHRGQVVLE 187

Query: 142 -----------------HFFLAYILIRIKSSSTEKLHQTHLASLAPIRAVLRPSNVGIVI 171
                            H   A +L+R+++   E+L + HLA LAP+ AV  P +V +V+
Sbjct: 188 HHHAACAAAVQVAEEGEHLLPADVLVRLEALGAEELGEAHLAGLAPVGAVGGPGDVAVVV 247

[Close]

BLAST of CcUC07G141940 vs. ExPASy TrEMBL
Match: A0A3B6MQG5 (Uncharacterized protein OS=Triticum aestivum OX=4565 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.0e-13
Identity = 58/210 (27.62%), Postives = 99/210 (47.14%), Query Frame = 0


Query: 12  LIVSFAIALMIVSQLQQNIHHILSNIILNSL-SPFIMFIQHMFKKPIKLLAQRLHSLHIP 71
           L V   +   I  +LQQ++HH+L +  L  + +P  + +  + ++P++ LAQ LH L +P
Sbjct: 58  LSVELDLETGIAGELQQHVHHVLDHEALPLVPTPLAVLVHDVLQEPVEHLAQLLHPLDVP 117

Query: 72  LQIQEINPWNRIPNVKHTTQQEQLIQHFLEL----------------------------I 131
           LQ+  + P + + +V+H  +QEQL+ H LEL                            +
Sbjct: 118 LQVHPVEPRDGVADVEHAVEQEQLVDHPLELLRRRDHRPCLVPHLLLQVLLAHHHARDHV 177

Query: 132 WTNNGSI----------------------HFFLAYILIRIKSSSTEKLHQTHLASLAPIR 171
             + G +                      H   A +L+R+++   E+L + HLA LAP+ 
Sbjct: 178 QAHRGQVVLEHHHAAGTGAAAVQVAEEGEHLLPADVLVRLEALGAEELGEAHLAGLAPVG 237

[Close]

BLAST of CcUC07G141940 vs. ExPASy TrEMBL
Match: A0A5A7PYB7 (SPla/RYanodine receptor (SPRY) domain-containing protein (Fragment) OS=Striga asiatica OX=4170 GN=STAS_14295 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 9.0e-10
Identity = 65/247 (26.32%), Postives = 105/247 (42.51%), Query Frame = 0


Query: 18  IALMIVSQLQQNIHHILSNIILNSLSPFIMFIQHMFKKPIKLLAQRLHSLHIPLQIQEIN 77
           + + ++ + QQ+IHH+     L S +     I H+ K+P+ L  + LH L++PL+I++I 
Sbjct: 152 VGIRVLCKPQQHIHHVFLRRPLLSHT----IINHVTKEPVDLPLKTLHLLNVPLKIKKIE 211

Query: 78  PWNRIPNVKHTTQQEQLIQHFLELIWTNNGSIHFFLA----------------------- 137
           P + I ++ HTTQ+E L+Q  L+L+  +   +  FLA                       
Sbjct: 212 PRHPITDIHHTTQKEPLVQKPLQLVERHTRPLEDFLAHEHAACGRESHDGLARLGKQSGD 271

Query: 138 --------YILIRIKSSSTEKLHQTHLASLAPIRAVLRPSNV-----------------G 197
                   ++L R+++   E L +     L+P+ AV  P +V                  
Sbjct: 272 EIGPLVRPHVLERVEALGVENLREVDFTGLSPLWAVWGPRHVRETYFPADSGGREAKTAS 331

Query: 198 IVIGGVLSSGGFGAG----------------HEVEIMDWWGRDPIKSRFPIKGHGFGPGG 201
            V+   L+  G  A                  + E  D  G  P++ R PI GHGFGPGG
Sbjct: 332 WVLRNCLAMSGDEATTTGDFPNFRSISSPYFRDREWRDMCGTGPMRWRLPITGHGFGPGG 391

[Close]

BLAST of CcUC07G141940 vs. ExPASy TrEMBL
Match: A0A2I0L114 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_005327 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.0e-06
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 170 MDWWGRDPIKSRFPIKGHGFGPGGRLSLRWR-RRRERRRRARVAIQA 216
           M+WWG  PI+ RFP+ G GFGPGG+LS R R +RRERR RARVA  A
Sbjct: 1   MEWWGSGPIRLRFPMMGQGFGPGGKLSCRPRQKRRERRMRARVASHA 47

[Close]

BLAST of CcUC07G141940 vs. ExPASy TrEMBL
Match: C0P7R0 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-04
Identity = 47/198 (23.74%), Postives = 81/198 (40.91%), Query Frame = 0


Query: 22  IVSQLQQNIHHILSN-IILNSLSPFIMFIQHMFKKPIKLLAQRLHSLHIPLQIQEINPWN 81
           +V +LQQ +HH+  +        P ++ + H+ ++ I+ LAQ LH   + L++Q   P +
Sbjct: 255 VVGELQQQVHHVRGDEPAALPPPPLVVLVHHVLQEAIEHLAQPLHPPDVALEVQPAEPRD 314

Query: 82  RIPNVKHTTQQEQLIQHFLEL---------------------------------IWTNNG 141
            +P+ +H  ++E+L+ H  EL                                 +   +G
Sbjct: 315 EVPDAEHAVEEEELVDHPAELGRRDRRARGAALADVLPAQRHARDHVEAVHEQVLLERDG 374

Query: 142 -------------------SIHFFLAYILIRIKSSSTEKLHQTHLASLAPIRAVLRPSNV 167
                                    A +L+R +    E++    LA LAP+R   RP +V
Sbjct: 375 PPAAPGRARGGRRRQGAQQDAQLLAADVLLRPELPVAEQMGLPELARLAPVRPAGRPDDV 434

The following BLAST results are available for this feature:

BLAST of CcUC07G141940 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF7058924.1	2.1e-13	28.28	hypothetical protein CFC21_065892 [Triticum aestivum]	[more]
KAF7072516.1	6.2e-13	27.62	hypothetical protein CFC21_077626 [Triticum aestivum]	[more]
GER37865.1	1.9e-09	26.32	SPla/RYanodine receptor (SPRY) domain-containing protein, partial [Striga asiati...	[more]
PKI74270.1	1.2e-05	65.96	hypothetical protein CRG98_005327 [Punica granatum]	[more]
ACN29026.1	2.3e-04	23.74	unknown [Zea mays]	[more]

BLAST of CcUC07G141940 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC07G141940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A3B6KG49	1.0e-13	28.28	Uncharacterized protein OS=Triticum aestivum OX=4565 PE=4 SV=1	[more]
A0A3B6MQG5	3.0e-13	27.62	Uncharacterized protein OS=Triticum aestivum OX=4565 PE=4 SV=1	[more]
A0A5A7PYB7	9.0e-10	26.32	SPla/RYanodine receptor (SPRY) domain-containing protein (Fragment) OS=Striga as...	[more]
A0A2I0L114	6.0e-06	65.96	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_005327 PE=4 SV=1	[more]
C0P7R0	1.1e-04	23.74	Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1	[more]

BLAST of CcUC07G141940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC07G141940.1	CcUC07G141940.1	mRNA