CcUC07G141320 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC07G141320
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	60S ribosomal protein L28-2-like
Location	CicolChr07: 27576367 .. 27577744 (+)
RNA-Seq Expression	CcUC07G141320
Synteny	CcUC07G141320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCGGTTCCAGGACAACTGATCTGGGAGATTGTTAAGAGGAACAACTCTTTTTTGGTGAAGGAGTTTGGAAGAGGAACAGCCGGCGTTCAGTTCAGCAAAGAGCCCAACAATTTATACAATCTGAACTCCTACAAGCATTCTGGTAAGTCATCTTAAATGCTCTGATTAGTGAAATGCTAGTCGATTAAGTTTGGGGGTTTTTGTTTGAATGTCGAGAGAACCTAGAGACGTCATCACAAGTATACTATGTCGGTATTTGAAGGTTTGCGTGTGATTTTTAGGTACTGGAGCAAAGGGATTAAGTAGAGGAAGTTGAAATATTAGAGCGTTGTCTGCTTTGATTCCCTGAAGTTTTTCAAATGACCTAAACGTTGCTATGTTATTGTCTGAATTTTTTATGTTCTTATCAAGTGGTGGATATCTAGATATATATGTGCAGATGCGTTGTGCATTCTGAATTTGGTGGGAGGGGCCAGCAAACTGATGTATACGATGTTGTAAATTATGTGAAATTTCGTTTCAAAATAATTTTCCATTTCTGCAGCAACCGCCAGGGGAGCAGAATAGAAATGTGTGAATGATTGTTTTCCTTGTTCAACTAATGTTAATGTCATTGGTTCTTTTATTGTTAGATGTGTTCAAGATATTGTTTAGTGCTTAGGATTACATGCTTGACAATTGATTCTGCAGTTATCCTCGTATTGCTAATCTGTTTCCACTTGGAAATGTATTTGAGTATTTGAACACTTGTTATTGTGTCCTCGTTGAACAGTTTGGTTTATTGTCTTGTATATATTTGAATTTGATTTATTTTAGAACTTTATTAGTAGTGATGAGAGGAGTTTCAGGGGCATCATTCTTTTATTCGTTCTTTTTATTGTTTGTTTAGCATTGAACATAATAATTGCCTATAGTGAGTTCACTTTATGTGTATAGGTTCATTAAGATTCTTGTGTTTTAGGTTTGGCCAACAAGAAAACTGTTACAATCCAACCTGGAGGCAAAGATCAATCCATTTTGCTTGCAACAACTAAGAGCAAGAAACAGAACAAACCTGCGTCATTGCTTCATAAATCTTTGATGAAGAAAGAGTTCCGTAGGATGGCAAAAGCTGTAACAAACCAGGTATAAGCAGCAGACCTTACTTATCTCTCGAGTACTAGTTTCTAATAAAATGTGATTAGTACACGGCTGGAACAGCTGCATTAACTCCGGACTCAAATGATATCAGGTGGCAGATAACTACTACAGGCCAGATCTGAAGAAGGCTGCCCTAGCAAGATTGAGTGCTGTAAACAGGAGCCTTAAGGTTGCAAAGTCTGGGGTTAAGAAGAGGAACAGGCAAGCCTTGAAATCAAGTGGCAGGAAGTGA

mRNA sequence

ATGGCGGCGGTTCCAGGACAACTGATCTGGGAGATTGTTAAGAGGAACAACTCTTTTTTGGTGAAGGAGTTTGGAAGAGGAACAGCCGGCGTTCAGTTCAGCAAAGAGCCCAACAATTTATACAATCTGAACTCCTACAAGCATTCTGGTTTGGCCAACAAGAAAACTGTTACAATCCAACCTGGAGGCAAAGATCAATCCATTTTGCTTGCAACAACTAAGAGCAAGAAACAGAACAAACCTGCGTCATTGCTTCATAAATCTTTGATGAAGAAAGAGTTCCGTAGGATGGCAAAAGCTGTAACAAACCAGGTGGCAGATAACTACTACAGGCCAGATCTGAAGAAGGCTGCCCTAGCAAGATTGAGTGCTGTAAACAGGAGCCTTAAGGTTGCAAAGTCTGGGGTTAAGAAGAGGAACAGGCAAGCCTTGAAATCAAGTGGCAGGAAGTGA

Coding sequence (CDS)

ATGGCGGCGGTTCCAGGACAACTGATCTGGGAGATTGTTAAGAGGAACAACTCTTTTTTGGTGAAGGAGTTTGGAAGAGGAACAGCCGGCGTTCAGTTCAGCAAAGAGCCCAACAATTTATACAATCTGAACTCCTACAAGCATTCTGGTTTGGCCAACAAGAAAACTGTTACAATCCAACCTGGAGGCAAAGATCAATCCATTTTGCTTGCAACAACTAAGAGCAAGAAACAGAACAAACCTGCGTCATTGCTTCATAAATCTTTGATGAAGAAAGAGTTCCGTAGGATGGCAAAAGCTGTAACAAACCAGGTGGCAGATAACTACTACAGGCCAGATCTGAAGAAGGCTGCCCTAGCAAGATTGAGTGCTGTAAACAGGAGCCTTAAGGTTGCAAAGTCTGGGGTTAAGAAGAGGAACAGGCAAGCCTTGAAATCAAGTGGCAGGAAGTGA

Protein sequence

MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQPGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALARLSAVNRSLKVAKSGVKKRNRQALKSSGRK

Homology

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BLAST of CcUC07G141320 vs. NCBI nr
Match: XP_008447584.1 (PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447585.1 PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447586.1 PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >KAA0061117.1 60S ribosomal protein L28-2-like [Cucumis melo var. makuwa] >TYK03788.1 60S ribosomal protein L28-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 277.3 bits (708), Expect = 7.6e-71
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKP+SLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 147
           RLSAVNRSLKVAKSGVKKRNRQALKS
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146

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BLAST of CcUC07G141320 vs. NCBI nr
Match: XP_038886678.1 (60S ribosomal protein L28-2-like [Benincasa hispida])

HSP 1 Score: 275.8 bits (704), Expect = 2.2e-70
Identity = 146/150 (97.33%), Postives = 148/150 (98.67%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKP+SLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSSGRK 151
           RLSAVNRSLKVAKSGVKKRNRQALKS+ RK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSNVRK 150

[Close]

BLAST of CcUC07G141320 vs. NCBI nr
Match: XP_022148100.1 (60S ribosomal protein L28-2-like [Momordica charantia])

HSP 1 Score: 272.7 bits (696), Expect = 1.9e-69
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAV GQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALK 146
           RLSAVNRSLKVAKSGVKKRNRQAL+
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALR 145

[Close]

BLAST of CcUC07G141320 vs. NCBI nr
Match: XP_022949503.1 (60S ribosomal protein L28-2-like [Cucurbita moschata] >XP_022998347.1 60S ribosomal protein L28-2-like [Cucurbita maxima] >XP_023523885.1 60S ribosomal protein L28-2-like [Cucurbita pepo subsp. pepo] >KAG7036445.1 60S ribosomal protein L28-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 271.9 bits (694), Expect = 3.2e-69
Identity = 143/150 (95.33%), Postives = 145/150 (96.67%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSIL ATTKSKKQNKP+SLLHKSLMKKEFRRMAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSSGRK 151
           RLSAVNRSLKVAKSGVKKRNRQALKS GRK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSRGRK 150

[Close]

BLAST of CcUC07G141320 vs. NCBI nr
Match: KAG6606729.1 (hypothetical protein SDJN03_00071, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 271.9 bits (694), Expect = 3.2e-69
Identity = 143/150 (95.33%), Postives = 145/150 (96.67%), Query Frame = 0


Query: 1    MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
            MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1464 MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 1523

Query: 61   PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
            PGGKDQSIL ATTKSKKQNKP+SLLHKSLMKKEFRRMAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 1524 PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 1583

Query: 121  RLSAVNRSLKVAKSGVKKRNRQALKSSGRK 151
            RLSAVNRSLKVAKSGVKKRNRQALKS GRK
Sbjct: 1584 RLSAVNRSLKVAKSGVKKRNRQALKSRGRK 1613

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BLAST of CcUC07G141320 vs. ExPASy Swiss-Prot
Match: Q9M0E2 (60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 8.0e-55
Identity = 108/143 (75.52%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVKRNN FLVK+FGRG A VQFSKE NNL N+NSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
             GKDQ ++L TTK+K+QNKP   ++KS++KKEF RM+K V NQV DNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of CcUC07G141320 vs. ExPASy Swiss-Prot
Match: O82204 (60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.2e-53
Identity = 107/143 (74.83%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVK NN FLVK+FGRG + VQFSKE NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
              KDQ+++LATTK+KKQNKP   ++KS++KKEF RM+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of CcUC07G141320 vs. ExPASy Swiss-Prot
Match: O14069 (Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl44 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.9e-14
Identity = 48/135 (35.56%), Postives = 74/135 (54.81%), Query Frame = 0


Query: 3   AVPGQLIWEIVKRNNSFLVK--EFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 62
           +V   LIW++++ NN FLVK  EFG    G+QF++EP N+   N+ + SGL N K V +Q
Sbjct: 2   SVSNDLIWQVIRDNNRFLVKRPEFG----GIQFNREPVNVSGKNAQRFSGLCNDKAVGVQ 61

Query: 63  PGGKDQSILLATTKSKKQNKPASLLHKSLM-KKEFRRMAKAVTNQVADNYYRPDLKKAAL 122
                  +L+  T  K   KPA L  K ++     R+  K++  ++    YR DL K ++
Sbjct: 62  ANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSV 121

Query: 123 ARLSAVNRSLKVAKS 135
           AR SA+  S +  K+
Sbjct: 122 ARASAILSSQRPKKT 132

[Close]

BLAST of CcUC07G141320 vs. ExPASy Swiss-Prot
Match: Q962T2 (60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.9e-14
Identity = 50/127 (39.37%), Postives = 68/127 (53.54%), Query Frame = 0


Query: 8   LIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQPGGKDQS 67
           L W I++ NN+FLVK   +      FSKEPNN+ NLNSY+++GL  KK V +      + 
Sbjct: 5   LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKG 64

Query: 68  ILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALARLSAVNR 127
             +   K+K  NKPA    +   K   RR    V   +  N+YR DL KA L R SA+ R
Sbjct: 65  FTVVYKKAKATNKPAKNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAILR 124

Query: 128 SLKVAKS 135
           S +  K+
Sbjct: 125 SQRPIKA 128

[Close]

BLAST of CcUC07G141320 vs. ExPASy Swiss-Prot
Match: P46779 (60S ribosomal protein L28 OS=Homo sapiens OX=9606 GN=RPL28 PE=1 SV=3)

HSP 1 Score: 74.7 bits (182), Expect = 9.9e-13
Identity = 46/140 (32.86%), Postives = 79/140 (56.43%), Query Frame = 0


Query: 8   LIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQPGGKDQS 67
           L W +V+  +SFL+K   +      +S EPNNL   NS++++GL ++KTV ++P    + 
Sbjct: 5   LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 64

Query: 68  ILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALARLSAVNR 127
           +++   +   Q KPA+   ++ + K  R    ++ + +  N YRPDL+ AA+ R SA+ R
Sbjct: 65  VVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 124

Query: 128 SLKVAKSGVKKRNRQALKSS 148
           S K     VK++  +  KSS
Sbjct: 125 SQKPVM--VKRKRTRPTKSS 137

[Close]

BLAST of CcUC07G141320 vs. ExPASy TrEMBL
Match: A0A1S3BIE3 (60S ribosomal protein L28-2-like OS=Cucumis melo OX=3656 GN=LOC103490001 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.7e-71
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKP+SLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 147
           RLSAVNRSLKVAKSGVKKRNRQALKS
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146

[Close]

BLAST of CcUC07G141320 vs. ExPASy TrEMBL
Match: A0A5D3BXS0 (60S ribosomal protein L28-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001760 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.7e-71
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKP+SLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 147
           RLSAVNRSLKVAKSGVKKRNRQALKS
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146

[Close]

BLAST of CcUC07G141320 vs. ExPASy TrEMBL
Match: A0A6J1D200 (60S ribosomal protein L28-2-like OS=Momordica charantia OX=3673 GN=LOC111016861 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 9.1e-70
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAV GQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALK 146
           RLSAVNRSLKVAKSGVKKRNRQAL+
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALR 145

[Close]

BLAST of CcUC07G141320 vs. ExPASy TrEMBL
Match: A0A6J1K7P5 (60S ribosomal protein L28-2-like OS=Cucurbita maxima OX=3661 GN=LOC111493014 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.6e-69
Identity = 143/150 (95.33%), Postives = 145/150 (96.67%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSIL ATTKSKKQNKP+SLLHKSLMKKEFRRMAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSSGRK 151
           RLSAVNRSLKVAKSGVKKRNRQALKS GRK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSRGRK 150

[Close]

BLAST of CcUC07G141320 vs. ExPASy TrEMBL
Match: A0A0A0LIG3 (Ribosomal_L28e domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G849920 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.6e-69
Identity = 143/146 (97.95%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKP+S LHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 147
           RLSAVNRSLKVAKSGVKKRNRQALKS
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146

[Close]

BLAST of CcUC07G141320 vs. TAIR 10
Match: AT4G29410.1 (Ribosomal L28e protein family )

HSP 1 Score: 214.5 bits (545), Expect = 5.7e-56
Identity = 108/143 (75.52%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVKRNN FLVK+FGRG A VQFSKE NNL N+NSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
             GKDQ ++L TTK+K+QNKP   ++KS++KKEF RM+K V NQV DNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of CcUC07G141320 vs. TAIR 10
Match: AT4G29410.2 (Ribosomal L28e protein family )

HSP 1 Score: 214.5 bits (545), Expect = 5.7e-56
Identity = 108/143 (75.52%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVKRNN FLVK+FGRG A VQFSKE NNL N+NSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
             GKDQ ++L TTK+K+QNKP   ++KS++KKEF RM+K V NQV DNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of CcUC07G141320 vs. TAIR 10
Match: AT2G19730.1 (Ribosomal L28e protein family )

HSP 1 Score: 210.7 bits (535), Expect = 8.2e-55
Identity = 107/143 (74.83%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVK NN FLVK+FGRG + VQFSKE NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
              KDQ+++LATTK+KKQNKP   ++KS++KKEF RM+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of CcUC07G141320 vs. TAIR 10
Match: AT2G19730.2 (Ribosomal L28e protein family )

HSP 1 Score: 210.7 bits (535), Expect = 8.2e-55
Identity = 107/143 (74.83%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVK NN FLVK+FGRG + VQFSKE NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
              KDQ+++LATTK+KKQNKP   ++KS++KKEF RM+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of CcUC07G141320 vs. TAIR 10
Match: AT2G19730.3 (Ribosomal L28e protein family )

HSP 1 Score: 210.7 bits (535), Expect = 8.2e-55
Identity = 107/143 (74.83%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVK NN FLVK+FGRG + VQFSKE NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
              KDQ+++LATTK+KKQNKP   ++KS++KKEF RM+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

The following BLAST results are available for this feature:

BLAST of CcUC07G141320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447584.1	7.6e-71	99.32	PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447585.1 PREDI...	[more]
XP_038886678.1	2.2e-70	97.33	60S ribosomal protein L28-2-like [Benincasa hispida]	[more]
XP_022148100.1	1.9e-69	98.62	60S ribosomal protein L28-2-like [Momordica charantia]	[more]
XP_022949503.1	3.2e-69	95.33	60S ribosomal protein L28-2-like [Cucurbita moschata] >XP_022998347.1 60S riboso...	[more]
KAG6606729.1	3.2e-69	95.33	hypothetical protein SDJN03_00071, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CcUC07G141320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0E2	8.0e-55	75.52	60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1	[more]
O82204	1.2e-53	74.83	60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1	[more]
O14069	8.9e-14	35.56	Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe (strain 972 / A...	[more]
Q962T2	8.9e-14	39.37	60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1	[more]
P46779	9.9e-13	32.86	60S ribosomal protein L28 OS=Homo sapiens OX=9606 GN=RPL28 PE=1 SV=3	[more]

BLAST of CcUC07G141320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BIE3	3.7e-71	99.32	60S ribosomal protein L28-2-like OS=Cucumis melo OX=3656 GN=LOC103490001 PE=3 SV...	[more]
A0A5D3BXS0	3.7e-71	99.32	60S ribosomal protein L28-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A6J1D200	9.1e-70	98.62	60S ribosomal protein L28-2-like OS=Momordica charantia OX=3673 GN=LOC111016861 ...	[more]
A0A6J1K7P5	1.6e-69	95.33	60S ribosomal protein L28-2-like OS=Cucurbita maxima OX=3661 GN=LOC111493014 PE=...	[more]
A0A0A0LIG3	1.6e-69	97.95	Ribosomal_L28e domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G849...	[more]

BLAST of CcUC07G141320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29410.1	5.7e-56	75.52	Ribosomal L28e protein family	[more]
AT4G29410.2	5.7e-56	75.52	Ribosomal L28e protein family	[more]
AT2G19730.1	8.2e-55	74.83	Ribosomal L28e protein family	[more]
AT2G19730.2	8.2e-55	74.83	Ribosomal L28e protein family	[more]
AT2G19730.3	8.2e-55	74.83	Ribosomal L28e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029004	Ribosomal L28e/Mak16	PFAM	PF01778	Ribosomal_L28e	coord: 8..128 e-value: 3.6E-36 score: 124.4
None	No IPR available	GENE3D	3.30.390.110		coord: 6..134 e-value: 1.2E-45 score: 157.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..150
None	No IPR available	PANTHER	PTHR10544:SF19	60S RIBOSOMAL PROTEIN L28-1-LIKE	coord: 1..150
IPR002672	Ribosomal protein L28e	PANTHER	PTHR10544	60S RIBOSOMAL PROTEIN L28	coord: 1..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC07G141320.1	CcUC07G141320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome