CcUC07G141230 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC07G141230
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Mediator of RNA polymerase II transcription subunit 6
Location	CicolChr07: 27469411 .. 27472571 (-)
RNA-Seq Expression	CcUC07G141230
Synteny	CcUC07G141230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCACTCAGAGCGGAGGGATCTGTAAAATTCGACACTTTGTGGTCGGAAAACTGAAATCTCACGCAAATGGCAACTCCACCACCACCGACGGCCCCGCCAGGGATCGGGAATTTTGAGGGCGGGCCGCTGCCGGCAGCGCCTCAGCCTCCAGGTACGGACATGACTGGAATTTGCTTTAGAGACCAGCTCTGGCTCAATACTTACCCTCTTGATCGAAACTTGGTTTTCGATTATTTCGCCTTGTCCCCTTTCTACGACTGGACTTGTAACAACGAACAACTCAGAATGCGCTCCATTCACCCACTCGATCTCTCTCAACTCTCGTATGATTTCTCGTCTTCTAATTTCTTTTTTTTATTTTTTTTTATTTCTGTTTAATAGGATTCGTCTTTTCTATTAATAGTTTTCTTCTTCTAATTGATTGTATATATGGCAAATGTTTTCTTCTTCTCCTATACTTGGATAATTCAACCATGTTCTTCATTTGTTTTTGTTCAAGTGAGATGTCCAAAATTTGTGATGGAATTCTTAAGACGTTGTTAATGGATTATAATAAGTTATGTTAATTGTAACACTAGGTTTCAATTTTCATTTAGGCATTACCATGATGGGTAATCTTCTGTTCAACAGAAAAATGACAGGTATAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTCGTTTTCAGAAAGCAAAAGAGGGATGGCCCTGAGAAAGTCACACCGATGCTGACTTACTATATCTTGGATGGTTCAATTTACCAGGCGCCTCAGCTTTGCAATGTTTTTGCTGCCCGTGTTGTGAGATTGTCATACTTATCACTGCCATTTATTTGGTGCAATCTTAGTTTTTTTTTTAGTTGATAATTGGTGCATTTGGATCATTTCGTAGTTCCATTTAGTAAATTATCATAGTGGGTAACATCTCTTCAACTGTAAACTTAATTGCTGGGTTCCTTTTCTTTTTCCCCTATGCTTTGAAATTAATGTAGAATTTGTTTTAAAATGTATGGCTATTCTGTATTCGGCCTCTCTCTTGCTCTGTTTTGTTGTAGTCTTACGTTGAGTTTTCATCATACTGCAGAGTCGGGCATTATATTACATATCAAAGGCCTTTACCACTGCTTCTTCAAAGTTGGAGAAGATAGGATATGGTATCTAGCTATTGGTGATATATTTTATGCACTTACTATTTTAAGTTATAAGTAAAAGATAATTATTGATCAATTATTTTACGCACTCGCGCTTTTGTTATCTTATCTTAACACGTGTTGTTTTTAAAATTTTAGTTAAGTCATACTACTTTAGAGATTAACTTTTTGTTACTAATGAAGAATTGGAGACTCCTTGACACTAAAAAAACAAGAGAGACAAACTCTATGATGGCCATTCAGGGTTTAGATAGTTGACATTTATAACACCCAATAGTCTTTATGAATGTTCTTTTGAATTCAAACTTCATTCTGAAATCAAATTTTGGGTCTTATATGGAATAGTTCATTCTGATAAGAAATGTAGAATACACTACAAAGATACAATGCAGCACATTGCCTAATTGCCTCTGATAATCTTTAACTTTCTTCTTACAGCTTTGCAACTTCAATTTTATTAACTATTTTCTCATTTCTGGTTCAGTTGATTCTGAAAATGAGAGTGAAGAAGTAAAACCTGCAAAAGAAACCATTAACTTTAAGGAAGTAAAGCGAGTTGATCATATTCTTGCATCCTTACAGCGCAAGGTAGTTTTTTAAATATCATGAATCATCTACTCTCAATGGACATATTGGTAATGCATGAGCTTTATCTTTTCTATTATAGAAGATGATATTGTGTTTGTGTATATGCTGCAAAGAGCTAGTTTATCAAATGTCTTGTATTAAGAAGATAGTGGTGAGAGTTTGGATGCAGTTTTTCTCGGGTCATAATCTCACCAGATGAAATTTTCTGCTTTTAAACAAAAACATGTATGAATAGTTGTTGAACTTCTACAAATTATGTTTTTCATATTGTGTCTTCTAATGGATGACCTATATTTCAAATCAATGAAATTGTTTTCACTTATAAGGTCAATATTTTAAAATAAGTAATTTTTTTTACGTACAGAATTTGGAGTACATGAATATTAAATTTGATGTGTATAATAACATTAACATTTACAAATCCTCCATCAGAGCTGGAGTTTGTAAAAGCTGTTGGAAATCCTTGTCTGTATTTATATGGGGGTTCATTATGTCGATTCTTTAGCTGATTGTATAAATGAGTGTTATTAAGTACTCATATGATTTCTCTAAGGGGTATATTTATTCAAGTGAATCTTTCAAATACAGTTTTAGATTGAAGTCCTTGTCGCATTTCATTCAATAACAACAGAATTTTTATGAAGTCTCATCAGTTTATTTAAGATTCGAACAACATTACCACACCTAATCTAACCACTCATAAACCACTTACCTGACTCATCCTGAATGGACAACAATTGACTTAGGCTTCAAATCTGTACAAATTCATATATATTGTATCTGTAATTAATTGAAATTAATCCAATTGAACTTGTAAAACAATTAAATTATTTTGGGAGATAAGCTAGCGGTCAATTTCGAATATATCTTGTCTCAATGCTTTGGCTGAAGATCCTCATGGCAAATTTTCTTGTTAACACTTTTGCAGCTGCCACCTGCCCCACCACCTCCACCATTTCCTGAAGGCTATGCTCCTGCTCCCACAGCAGAAACAGAGAAAGGCCCTGAAAATCAGCAAGGGGAATCACAACAGCCTCCAGCTGATCCCATTATTGATCAGGGTCCAGCTAAAAGGATGAAATTTTGAAGAGTTTATGCTACCTTGCCCATCTGACTTGAGAAACCTATTTAAACCTGCAATTGAAATTCAACACGGGTGACATGCCTGCAAAGCATGGTGAGTTGTCAAACACCCCCCACCAAAAAGAAAAGGAAGTTAGAATAGCCTTTGTGAAAAGCCTGTAATTATAGACTTAGCTGGTCACAAATGGATTCATTATTCATTGTTTTAGCAGTAACTTGTACTACACTACCATGTAAGCATGACTTCTTGATTTTGTAAGTTAAAACTGTTTGATACACATACCACCAGGTTCTTTGATATCTTGGGAAATAGTTTTTTAATATTGAACATGGT

mRNA sequence

TTCACTCAGAGCGGAGGGATCTGTAAAATTCGACACTTTGTGGTCGGAAAACTGAAATCTCACGCAAATGGCAACTCCACCACCACCGACGGCCCCGCCAGGGATCGGGAATTTTGAGGGCGGGCCGCTGCCGGCAGCGCCTCAGCCTCCAGGTACGGACATGACTGGAATTTGCTTTAGAGACCAGCTCTGGCTCAATACTTACCCTCTTGATCGAAACTTGGTTTTCGATTATTTCGCCTTGTCCCCTTTCTACGACTGGACTTGTAACAACGAACAACTCAGAATGCGCTCCATTCACCCACTCGATCTCTCTCAACTCTCAAAAATGACAGGTATAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTCGTTTTCAGAAAGCAAAAGAGGGATGGCCCTGAGAAAGTCACACCGATGCTGACTTACTATATCTTGGATGGTTCAATTTACCAGGCGCCTCAGCTTTGCAATGTTTTTGCTGCCCGTGTTGTGAGATTAATTTGTTTTAAAATGTATGGCTATTCTGTATTCGGCCTCTCTCTTGCTCTGTTTTGTTGTAGTCTTACGTTGAGTTTTCATCATACTGCAGAGTCGGGCATTATATTACATATCAAAGGCCTTTACCACTGCTTCTTCAAAGTTGGAGAAGATAGGATATGGTATCTAGCTATTGGTGATATATTTTATGCACTTACTATTTTAAGTTATAAACTTCATTCTGAAATCAAATTTTGGGTCTTATATGGAATACTTTGCAACTTCAATTTTATTAACTATTTTCTCATTTCTGGTTCAGTTGATTCTGAAAATGAGAGTGAAGAAGTAAAACCTGCAAAAGAAACCATTAACTTTAAGGAAGTAAAGCGAGTTGATCATATTCTTGCATCCTTACAGCGCAAGAAGATGATATTGTGTTTGTGTATATGCTGCAAAGAGCTAGTTTATCAAATGTCTTGTATTAAGAAGATAGTGCTGCCACCTGCCCCACCACCTCCACCATTTCCTGAAGGCTATGCTCCTGCTCCCACAGCAGAAACAGAGAAAGGCCCTGAAAATCAGCAAGGGGAATCACAACAGCCTCCAGCTGATCCCATTATTGATCAGGGTCCAGCTAAAAGGATGAAATTTTGAAGAGTTTATGCTACCTTGCCCATCTGACTTGAGAAACCTATTTAAACCTGCAATTGAAATTCAACACGGGTGACATGCCTGCAAAGCATGGTGAGTTGTCAAACACCCCCCACCAAAAAGAAAAGGAAGTTAGAATAGCCTTTGTGAAAAGCCTGTAATTATAGACTTAGCTGGTCACAAATGGATTCATTATTCATTGTTTTAGCAGTAACTTGTACTACACTACCATGTAAGCATGACTTCTTGATTTTGTAAGTTAAAACTGTTTGATACACATACCACCAGGTTCTTTGATATCTTGGGAAATAGTTTTTTAATATTGAACATGGT

Coding sequence (CDS)

ATGGCAACTCCACCACCACCGACGGCCCCGCCAGGGATCGGGAATTTTGAGGGCGGGCCGCTGCCGGCAGCGCCTCAGCCTCCAGGTACGGACATGACTGGAATTTGCTTTAGAGACCAGCTCTGGCTCAATACTTACCCTCTTGATCGAAACTTGGTTTTCGATTATTTCGCCTTGTCCCCTTTCTACGACTGGACTTGTAACAACGAACAACTCAGAATGCGCTCCATTCACCCACTCGATCTCTCTCAACTCTCAAAAATGACAGGTATAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTCGTTTTCAGAAAGCAAAAGAGGGATGGCCCTGAGAAAGTCACACCGATGCTGACTTACTATATCTTGGATGGTTCAATTTACCAGGCGCCTCAGCTTTGCAATGTTTTTGCTGCCCGTGTTGTGAGATTAATTTGTTTTAAAATGTATGGCTATTCTGTATTCGGCCTCTCTCTTGCTCTGTTTTGTTGTAGTCTTACGTTGAGTTTTCATCATACTGCAGAGTCGGGCATTATATTACATATCAAAGGCCTTTACCACTGCTTCTTCAAAGTTGGAGAAGATAGGATATGGTATCTAGCTATTGGTGATATATTTTATGCACTTACTATTTTAAGTTATAAACTTCATTCTGAAATCAAATTTTGGGTCTTATATGGAATACTTTGCAACTTCAATTTTATTAACTATTTTCTCATTTCTGGTTCAGTTGATTCTGAAAATGAGAGTGAAGAAGTAAAACCTGCAAAAGAAACCATTAACTTTAAGGAAGTAAAGCGAGTTGATCATATTCTTGCATCCTTACAGCGCAAGAAGATGATATTGTGTTTGTGTATATGCTGCAAAGAGCTAGTTTATCAAATGTCTTGTATTAAGAAGATAGTGCTGCCACCTGCCCCACCACCTCCACCATTTCCTGAAGGCTATGCTCCTGCTCCCACAGCAGAAACAGAGAAAGGCCCTGAAAATCAGCAAGGGGAATCACAACAGCCTCCAGCTGATCCCATTATTGATCAGGGTCCAGCTAAAAGGATGAAATTTTGA

Protein sequence

MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYGYSVFGLSLALFCCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTILSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEEVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF

Homology

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BLAST of CcUC07G141230 vs. NCBI nr
Match: XP_038896808.1 (mediator of RNA polymerase II transcription subunit 6 [Benincasa hispida])

HSP 1 Score: 422.9 bits (1086), Expect = 2.7e-114
Identity = 238/357 (66.67%), Postives = 239/357 (66.95%), Query Frame = 0


Query: 1   MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCNVFAARVVRLICFKMYGYSVFGLSLALFCCSLTLSFHHTAESG 180
           LTYYILDGSIYQAPQLCNVFAARV R                                  
Sbjct: 121 LTYYILDGSIYQAPQLCNVFAARVSR---------------------------------- 180

Query: 181 IILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTILSYKLHSEIKFWVLYGILCNFNFINY 240
                  LY+                 I  A T  S KL                     
Sbjct: 181 ------ALYY-----------------ISKAFTTASSKLEK------------------- 240

Query: 241 FLISGSVDSENESEEVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSC 300
               G VDSENE EEVKPAKETINFKEVKRVDHILASLQRK                   
Sbjct: 241 ---IGYVDSENEGEEVKPAKETINFKEVKRVDHILASLQRK------------------- 254

Query: 301 IKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF 358
                LPPAPPPPPFPEGYAPAPTAETEKGPEN  GESQQPPADPIIDQGPAKRMKF
Sbjct: 301 -----LPPAPPPPPFPEGYAPAPTAETEKGPENPLGESQQPPADPIIDQGPAKRMKF 254

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BLAST of CcUC07G141230 vs. NCBI nr
Match: XP_004149176.2 (mediator of RNA polymerase II transcription subunit 6 [Cucumis sativus] >KGN58013.1 hypothetical protein Csa_011693 [Cucumis sativus])

HSP 1 Score: 419.5 bits (1077), Expect = 3.0e-113
Identity = 237/357 (66.39%), Postives = 239/357 (66.95%), Query Frame = 0


Query: 1   MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPPPPTAPPG GNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCNVFAARVVRLICFKMYGYSVFGLSLALFCCSLTLSFHHTAESG 180
           LTYYILDGSIYQAPQLC+VFAARV R                                  
Sbjct: 121 LTYYILDGSIYQAPQLCSVFAARVSR---------------------------------- 180

Query: 181 IILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTILSYKLHSEIKFWVLYGILCNFNFINY 240
                  LY+                 I  A T  S KL                     
Sbjct: 181 ------ALYY-----------------ISKAFTTASSKLEK------------------- 240

Query: 241 FLISGSVDSENESEEVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSC 300
               G VDSENESEEVKPAKETINFKEVKRVDHILASLQRK                   
Sbjct: 241 ---IGYVDSENESEEVKPAKETINFKEVKRVDHILASLQRK------------------- 254

Query: 301 IKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF 358
                LPPAPPPPPFPEGYAPA TAETEKGPENQQGESQQP ADPIIDQGPAKRMKF
Sbjct: 301 -----LPPAPPPPPFPEGYAPAATAETEKGPENQQGESQQPSADPIIDQGPAKRMKF 254

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BLAST of CcUC07G141230 vs. NCBI nr
Match: XP_008447572.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cucumis melo] >KAA0050863.1 mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cucumis melo var. makuwa] >TYK08489.1 mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 417.9 bits (1073), Expect = 8.6e-113
Identity = 237/358 (66.20%), Postives = 240/358 (67.04%), Query Frame = 0


Query: 1   MATPPPP-TAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60
           MATPPPP TAPPG GNFEGGP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL
Sbjct: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60

Query: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120
           SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP
Sbjct: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120

Query: 121 MLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYGYSVFGLSLALFCCSLTLSFHHTAES 180
           MLTYYILDGSIYQAPQLCNVFAARV R                                 
Sbjct: 121 MLTYYILDGSIYQAPQLCNVFAARVSR--------------------------------- 180

Query: 181 GIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTILSYKLHSEIKFWVLYGILCNFNFIN 240
                   LY+                 I  A T  S KL                    
Sbjct: 181 -------ALYY-----------------ISKAFTTASSKLEK------------------ 240

Query: 241 YFLISGSVDSENESEEVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMS 300
                G VDSENESEEVKPAKETINFKEVKRVDHILASLQRK                  
Sbjct: 241 ----IGYVDSENESEEVKPAKETINFKEVKRVDHILASLQRK------------------ 255

Query: 301 CIKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF 358
                 LPPAPPPPPFPEGYAPAPTA+TEKGPENQQGESQQP ADPIIDQGPAKRMKF
Sbjct: 301 ------LPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF 255

[Close]

BLAST of CcUC07G141230 vs. NCBI nr
Match: XP_022148297.1 (mediator of RNA polymerase II transcription subunit 6 [Momordica charantia])

HSP 1 Score: 405.6 bits (1041), Expect = 4.4e-109
Identity = 230/357 (64.43%), Postives = 231/357 (64.71%), Query Frame = 0


Query: 1   MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPPPP APPGI NFEGGP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPPPPAAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCNVFAARVVRLICFKMYGYSVFGLSLALFCCSLTLSFHHTAESG 180
           LTYYILDGSIYQAPQLCNVFAARV R                                  
Sbjct: 121 LTYYILDGSIYQAPQLCNVFAARVSR---------------------------------- 180

Query: 181 IILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTILSYKLHSEIKFWVLYGILCNFNFINY 240
                  LY+                 I  A T  S KL                     
Sbjct: 181 ------ALYY-----------------ISKAFTTASSKLEK------------------- 240

Query: 241 FLISGSVDSENESEEVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSC 300
               G VDSENESEEVKP KETINFKEVKRVDHILASLQRK                   
Sbjct: 241 ---IGYVDSENESEEVKPGKETINFKEVKRVDHILASLQRK------------------- 254

Query: 301 IKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF 358
                LPPAPPPPPFPEGY PAPTAE EKGPENQ  E QQP ADPIIDQGPAKRMKF
Sbjct: 301 -----LPPAPPPPPFPEGYVPAPTAEVEKGPENQPAELQQPSADPIIDQGPAKRMKF 254

[Close]

BLAST of CcUC07G141230 vs. NCBI nr
Match: XP_023524903.1 (mediator of RNA polymerase II transcription subunit 6 [Cucurbita pepo subsp. pepo] >XP_023524905.1 mediator of RNA polymerase II transcription subunit 6 [Cucurbita pepo subsp. pepo] >KAG7036453.1 Mediator of RNA polymerase II transcription subunit 6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 392.5 bits (1007), Expect = 3.9e-105
Identity = 226/357 (63.31%), Postives = 230/357 (64.43%), Query Frame = 0


Query: 1   MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPP    PPGIGNFEGGP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPP----PPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCNVFAARVVRLICFKMYGYSVFGLSLALFCCSLTLSFHHTAESG 180
           LTYYILDGSIYQAPQLCNVFAARV R                                  
Sbjct: 121 LTYYILDGSIYQAPQLCNVFAARVSR---------------------------------- 180

Query: 181 IILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTILSYKLHSEIKFWVLYGILCNFNFINY 240
                  LY+                 I  A T  S KL                     
Sbjct: 181 ------ALYY-----------------ISKAFTTASSKLEK------------------- 240

Query: 241 FLISGSVDSENESEEVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSC 300
               G VDSENESEEVKPAK TI+FKEVKRVD ILASLQRK                   
Sbjct: 241 ---IGYVDSENESEEVKPAKGTIDFKEVKRVDRILASLQRK------------------- 250

Query: 301 IKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF 358
                LPPAPPPPPFPEGY PAP +E EKGPE+QQGE QQP ADPIIDQGPAKRMKF
Sbjct: 301 -----LPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF 250

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BLAST of CcUC07G141230 vs. ExPASy Swiss-Prot
Match: F4IXJ7 (Mediator of RNA polymerase II transcription subunit 6 OS=Arabidopsis thaliana OX=3702 GN=MED6 PE=1 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 3.3e-75
Identity = 173/337 (51.34%), Postives = 201/337 (59.64%), Query Frame = 0


Query: 21  LPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPL 80
           +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR RSIHPL
Sbjct: 22  IPPPLQPPGTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTCNNEILRRRSIHPL 81

Query: 81  DLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVF 140
           DLS LSKMTG+EYML +  EP+LFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLC+VF
Sbjct: 82  DLSHLSKMTGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSVF 141

Query: 141 AARVVRLICFKMYGYSVFGLSLALFCCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDRI 200
           AARV R         +++ +S A             A S +    + L  C   +    +
Sbjct: 142 AARVSR---------TIYNISKAF----------TDAASKLETIRQDLQVCLVAI----V 201

Query: 201 WYLAIGDIFYALTILSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEEVKPAK 260
             L++    Y L I     + E     +YG        N FL     +++NE  E KPA 
Sbjct: 202 LSLSVNLGSYFLLIFKLMANGE----QVYG-------FNKFLF--DTENQNEPAESKPAS 261

Query: 261 ETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYA 320
           ET++ KE+KRVD IL SL RK                        L P PPPPPFPEGY 
Sbjct: 262 ETVDLKEMKRVDVILTSLYRK------------------------LAPPPPPPPFPEGYV 298

Query: 321 PAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF 358
                  ++    Q GESQ P  DPIIDQGPAKRMKF
Sbjct: 322 SQEALGEKEELGTQGGESQPPQVDPIIDQGPAKRMKF 298

[Close]

BLAST of CcUC07G141230 vs. ExPASy Swiss-Prot
Match: Q54PN3 (Putative mediator of RNA polymerase II transcription subunit 6 OS=Dictyostelium discoideum OX=44689 GN=med6 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.3e-23
Identity = 55/118 (46.61%), Postives = 74/118 (62.71%), Query Frame = 0


Query: 31  DMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTG 90
           D+T + +RD LWL  YPL+   +  YF+ S FYD  CNNEQL+M+    LDLS L  M G
Sbjct: 65  DLTQVMWRDPLWLQMYPLNPQTILQYFSYSQFYDKNCNNEQLKMQR---LDLSALKNMDG 124

Query: 91  IEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLI 149
           +EY L + +EP  F+  KQ R  P  V     YY+++G+IYQAP+L  VF +RV + I
Sbjct: 125 LEYELIKFVEPSFFLIAKQTRISPTDVLINTLYYVINGNIYQAPELHVVFKSRVSQSI 179

[Close]

BLAST of CcUC07G141230 vs. ExPASy Swiss-Prot
Match: O75586 (Mediator of RNA polymerase II transcription subunit 6 OS=Homo sapiens OX=9606 GN=MED6 PE=1 SV=2)

HSP 1 Score: 98.2 bits (243), Expect = 2.0e-19
Identity = 52/120 (43.33%), Postives = 74/120 (61.67%), Query Frame = 0


Query: 31  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKM 90
           ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M
Sbjct: 9   NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 68

Query: 91  TGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLI 149
            GIEY+L    EP LF+ RKQ+R  P +V P+  YYI+ G IYQAP L +V  +RV+  +
Sbjct: 69  VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123

[Close]

BLAST of CcUC07G141230 vs. ExPASy Swiss-Prot
Match: Q921D4 (Mediator of RNA polymerase II transcription subunit 6 OS=Mus musculus OX=10090 GN=Med6 PE=1 SV=2)

HSP 1 Score: 98.2 bits (243), Expect = 2.0e-19
Identity = 52/120 (43.33%), Postives = 74/120 (61.67%), Query Frame = 0


Query: 31  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKM 90
           ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M
Sbjct: 9   NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 68

Query: 91  TGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLI 149
            GIEY+L    EP LF+ RKQ+R  P +V P+  YYI+ G IYQAP L +V  +RV+  +
Sbjct: 69  VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123

[Close]

BLAST of CcUC07G141230 vs. ExPASy Swiss-Prot
Match: Q5RD94 (Mediator of RNA polymerase II transcription subunit 6 OS=Pongo abelii OX=9601 GN=MED6 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.0e-19
Identity = 52/120 (43.33%), Postives = 74/120 (61.67%), Query Frame = 0


Query: 31  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKM 90
           ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M
Sbjct: 9   NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 68

Query: 91  TGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLI 149
            GIEY+L    EP LF+ RKQ+R  P +V P+  YYI+ G IYQAP L +V  +RV+  +
Sbjct: 69  VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123

[Close]

BLAST of CcUC07G141230 vs. ExPASy TrEMBL
Match: A0A0A0L8C2 (Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis sativus OX=3659 GN=Csa_3G434940 PE=3 SV=1)

HSP 1 Score: 419.5 bits (1077), Expect = 1.4e-113
Identity = 237/357 (66.39%), Postives = 239/357 (66.95%), Query Frame = 0


Query: 1   MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPPPPTAPPG GNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCNVFAARVVRLICFKMYGYSVFGLSLALFCCSLTLSFHHTAESG 180
           LTYYILDGSIYQAPQLC+VFAARV R                                  
Sbjct: 121 LTYYILDGSIYQAPQLCSVFAARVSR---------------------------------- 180

Query: 181 IILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTILSYKLHSEIKFWVLYGILCNFNFINY 240
                  LY+                 I  A T  S KL                     
Sbjct: 181 ------ALYY-----------------ISKAFTTASSKLEK------------------- 240

Query: 241 FLISGSVDSENESEEVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSC 300
               G VDSENESEEVKPAKETINFKEVKRVDHILASLQRK                   
Sbjct: 241 ---IGYVDSENESEEVKPAKETINFKEVKRVDHILASLQRK------------------- 254

Query: 301 IKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF 358
                LPPAPPPPPFPEGYAPA TAETEKGPENQQGESQQP ADPIIDQGPAKRMKF
Sbjct: 301 -----LPPAPPPPPFPEGYAPAATAETEKGPENQQGESQQPSADPIIDQGPAKRMKF 254

[Close]

BLAST of CcUC07G141230 vs. ExPASy TrEMBL
Match: A0A5D3CDR8 (Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00160 PE=3 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 4.2e-113
Identity = 237/358 (66.20%), Postives = 240/358 (67.04%), Query Frame = 0


Query: 1   MATPPPP-TAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60
           MATPPPP TAPPG GNFEGGP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL
Sbjct: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60

Query: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120
           SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP
Sbjct: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120

Query: 121 MLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYGYSVFGLSLALFCCSLTLSFHHTAES 180
           MLTYYILDGSIYQAPQLCNVFAARV R                                 
Sbjct: 121 MLTYYILDGSIYQAPQLCNVFAARVSR--------------------------------- 180

Query: 181 GIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTILSYKLHSEIKFWVLYGILCNFNFIN 240
                   LY+                 I  A T  S KL                    
Sbjct: 181 -------ALYY-----------------ISKAFTTASSKLEK------------------ 240

Query: 241 YFLISGSVDSENESEEVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMS 300
                G VDSENESEEVKPAKETINFKEVKRVDHILASLQRK                  
Sbjct: 241 ----IGYVDSENESEEVKPAKETINFKEVKRVDHILASLQRK------------------ 255

Query: 301 CIKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF 358
                 LPPAPPPPPFPEGYAPAPTA+TEKGPENQQGESQQP ADPIIDQGPAKRMKF
Sbjct: 301 ------LPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF 255

[Close]

BLAST of CcUC07G141230 vs. ExPASy TrEMBL
Match: A0A1S3BHR9 (Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis melo OX=3656 GN=LOC103489986 PE=3 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 4.2e-113
Identity = 237/358 (66.20%), Postives = 240/358 (67.04%), Query Frame = 0


Query: 1   MATPPPP-TAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60
           MATPPPP TAPPG GNFEGGP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL
Sbjct: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60

Query: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120
           SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP
Sbjct: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120

Query: 121 MLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYGYSVFGLSLALFCCSLTLSFHHTAES 180
           MLTYYILDGSIYQAPQLCNVFAARV R                                 
Sbjct: 121 MLTYYILDGSIYQAPQLCNVFAARVSR--------------------------------- 180

Query: 181 GIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTILSYKLHSEIKFWVLYGILCNFNFIN 240
                   LY+                 I  A T  S KL                    
Sbjct: 181 -------ALYY-----------------ISKAFTTASSKLEK------------------ 240

Query: 241 YFLISGSVDSENESEEVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMS 300
                G VDSENESEEVKPAKETINFKEVKRVDHILASLQRK                  
Sbjct: 241 ----IGYVDSENESEEVKPAKETINFKEVKRVDHILASLQRK------------------ 255

Query: 301 CIKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF 358
                 LPPAPPPPPFPEGYAPAPTA+TEKGPENQQGESQQP ADPIIDQGPAKRMKF
Sbjct: 301 ------LPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF 255

[Close]

BLAST of CcUC07G141230 vs. ExPASy TrEMBL
Match: A0A6J1D4P7 (Mediator of RNA polymerase II transcription subunit 6 OS=Momordica charantia OX=3673 GN=LOC111016983 PE=3 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 2.1e-109
Identity = 230/357 (64.43%), Postives = 231/357 (64.71%), Query Frame = 0


Query: 1   MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPPPP APPGI NFEGGP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPPPPAAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCNVFAARVVRLICFKMYGYSVFGLSLALFCCSLTLSFHHTAESG 180
           LTYYILDGSIYQAPQLCNVFAARV R                                  
Sbjct: 121 LTYYILDGSIYQAPQLCNVFAARVSR---------------------------------- 180

Query: 181 IILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTILSYKLHSEIKFWVLYGILCNFNFINY 240
                  LY+                 I  A T  S KL                     
Sbjct: 181 ------ALYY-----------------ISKAFTTASSKLEK------------------- 240

Query: 241 FLISGSVDSENESEEVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSC 300
               G VDSENESEEVKP KETINFKEVKRVDHILASLQRK                   
Sbjct: 241 ---IGYVDSENESEEVKPGKETINFKEVKRVDHILASLQRK------------------- 254

Query: 301 IKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF 358
                LPPAPPPPPFPEGY PAPTAE EKGPENQ  E QQP ADPIIDQGPAKRMKF
Sbjct: 301 -----LPPAPPPPPFPEGYVPAPTAEVEKGPENQPAELQQPSADPIIDQGPAKRMKF 254

[Close]

BLAST of CcUC07G141230 vs. ExPASy TrEMBL
Match: A0A6J1G911 (Mediator of RNA polymerase II transcription subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111452031 PE=3 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 4.2e-105
Identity = 226/357 (63.31%), Postives = 230/357 (64.43%), Query Frame = 0


Query: 1   MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPP    PPGIGNFEGGP  AAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPP----PPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCNVFAARVVRLICFKMYGYSVFGLSLALFCCSLTLSFHHTAESG 180
           LTYYILDGSIYQAPQLCNVFAARV R                                  
Sbjct: 121 LTYYILDGSIYQAPQLCNVFAARVSR---------------------------------- 180

Query: 181 IILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTILSYKLHSEIKFWVLYGILCNFNFINY 240
                  LY+                 I  A T  S KL                     
Sbjct: 181 ------ALYY-----------------ISKAFTTASSKLEK------------------- 240

Query: 241 FLISGSVDSENESEEVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSC 300
               G VDSENESEEVKPAKETI+FKEVKRVD ILASLQRK                   
Sbjct: 241 ---IGYVDSENESEEVKPAKETIDFKEVKRVDRILASLQRK------------------- 250

Query: 301 IKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF 358
                LPPAPPPPPFPEGY PAP +E EKGPE+QQGE QQP ADPIIDQGPAKRMKF
Sbjct: 301 -----LPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF 250

[Close]

BLAST of CcUC07G141230 vs. TAIR 10
Match: AT3G21350.2 (RNA polymerase transcriptional regulation mediator-related )

HSP 1 Score: 283.5 bits (724), Expect = 2.4e-76
Identity = 173/337 (51.34%), Postives = 201/337 (59.64%), Query Frame = 0


Query: 21  LPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPL 80
           +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR RSIHPL
Sbjct: 22  IPPPLQPPGTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTCNNEILRRRSIHPL 81

Query: 81  DLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVF 140
           DLS LSKMTG+EYML +  EP+LFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLC+VF
Sbjct: 82  DLSHLSKMTGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSVF 141

Query: 141 AARVVRLICFKMYGYSVFGLSLALFCCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDRI 200
           AARV R         +++ +S A             A S +    + L  C   +    +
Sbjct: 142 AARVSR---------TIYNISKAF----------TDAASKLETIRQDLQVCLVAI----V 201

Query: 201 WYLAIGDIFYALTILSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEEVKPAK 260
             L++    Y L I     + E     +YG        N FL     +++NE  E KPA 
Sbjct: 202 LSLSVNLGSYFLLIFKLMANGE----QVYG-------FNKFLF--DTENQNEPAESKPAS 261

Query: 261 ETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYA 320
           ET++ KE+KRVD IL SL RK                        L P PPPPPFPEGY 
Sbjct: 262 ETVDLKEMKRVDVILTSLYRK------------------------LAPPPPPPPFPEGYV 298

Query: 321 PAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF 358
                  ++    Q GESQ P  DPIIDQGPAKRMKF
Sbjct: 322 SQEALGEKEELGTQGGESQPPQVDPIIDQGPAKRMKF 298

[Close]

BLAST of CcUC07G141230 vs. TAIR 10
Match: AT3G21350.1 (RNA polymerase transcriptional regulation mediator-related )

HSP 1 Score: 270.8 bits (691), Expect = 1.6e-72
Identity = 166/339 (48.97%), Postives = 185/339 (54.57%), Query Frame = 0


Query: 21  LPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPL 80
           +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR RSIHPL
Sbjct: 22  IPPPLQPPGTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTCNNEILRRRSIHPL 81

Query: 81  DLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVF 140
           DLS LSKMTG+EYML +  EP+LFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLC+VF
Sbjct: 82  DLSHLSKMTGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSVF 141

Query: 141 AARVVRLICFKMYGYSVFGLSLALFCCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDRI 200
           AARV R                                                      
Sbjct: 142 AARVSR------------------------------------------------------ 201

Query: 201 WYLAIGDIFYALTILSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESE--EVKP 260
               I +I  A T  + KL +                         VD+EN++E  E KP
Sbjct: 202 ---TIYNISKAFTDAASKLET----------------------IRQVDTENQNEPAESKP 257

Query: 261 AKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEG 320
           A ET++ KE+KRVD IL SL RK                        L P PPPPPFPEG
Sbjct: 262 ASETVDLKEMKRVDVILTSLYRK------------------------LAPPPPPPPFPEG 257

Query: 321 YAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF 358
           Y        ++    Q GESQ P  DPIIDQGPAKRMKF
Sbjct: 322 YVSQEALGEKEELGTQGGESQPPQVDPIIDQGPAKRMKF 257

The following BLAST results are available for this feature:

BLAST of CcUC07G141230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896808.1	2.7e-114	66.67	mediator of RNA polymerase II transcription subunit 6 [Benincasa hispida]	[more]
XP_004149176.2	3.0e-113	66.39	mediator of RNA polymerase II transcription subunit 6 [Cucumis sativus] >KGN5801...	[more]
XP_008447572.1	8.6e-113	66.20	PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cuc...	[more]
XP_022148297.1	4.4e-109	64.43	mediator of RNA polymerase II transcription subunit 6 [Momordica charantia]	[more]
XP_023524903.1	3.9e-105	63.31	mediator of RNA polymerase II transcription subunit 6 [Cucurbita pepo subsp. pep...	[more]

BLAST of CcUC07G141230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IXJ7	3.3e-75	51.34	Mediator of RNA polymerase II transcription subunit 6 OS=Arabidopsis thaliana OX...	[more]
Q54PN3	2.3e-23	46.61	Putative mediator of RNA polymerase II transcription subunit 6 OS=Dictyostelium ...	[more]
O75586	2.0e-19	43.33	Mediator of RNA polymerase II transcription subunit 6 OS=Homo sapiens OX=9606 GN...	[more]
Q921D4	2.0e-19	43.33	Mediator of RNA polymerase II transcription subunit 6 OS=Mus musculus OX=10090 G...	[more]
Q5RD94	2.0e-19	43.33	Mediator of RNA polymerase II transcription subunit 6 OS=Pongo abelii OX=9601 GN...	[more]

BLAST of CcUC07G141230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8C2	1.4e-113	66.39	Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis sativus OX=3659...	[more]
A0A5D3CDR8	4.2e-113	66.20	Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis melo var. makuw...	[more]
A0A1S3BHR9	4.2e-113	66.20	Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1D4P7	2.1e-109	64.43	Mediator of RNA polymerase II transcription subunit 6 OS=Momordica charantia OX=...	[more]
A0A6J1G911	4.2e-105	63.31	Mediator of RNA polymerase II transcription subunit 6 OS=Cucurbita moschata OX=3...	[more]

BLAST of CcUC07G141230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21350.2	2.4e-76	51.34	RNA polymerase transcriptional regulation mediator-related	[more]
AT3G21350.1	1.6e-72	48.97	RNA polymerase transcriptional regulation mediator-related	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038566	Mediator complex, subunit Med6 superfamily	GENE3D	3.10.450.580	Mediator complex, subunit Med6	coord: 29..150 e-value: 4.1E-41 score: 142.1
IPR007018	Mediator complex, subunit Med6	PFAM	PF04934	Med6	coord: 35..147 e-value: 2.3E-37 score: 127.7
IPR007018	Mediator complex, subunit Med6	PANTHER	PTHR13104	MED-6-RELATED	coord: 20..148
IPR007018	Mediator complex, subunit Med6	PANTHER	PTHR13104	MED-6-RELATED	coord: 244..282 coord: 304..357
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 328..342
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 312..357
None	No IPR available	PANTHER	PTHR13104:SF2	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 6	coord: 244..282 coord: 304..357
None	No IPR available	PANTHER	PTHR13104:SF2	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 6	coord: 20..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC07G141230.1	CcUC07G141230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity