CcUC07G141040 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC07G141040
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	RAB6-interacting golgin
Location	CicolChr07: 27226176 .. 27227891 (-)
RNA-Seq Expression	CcUC07G141040
Synteny	CcUC07G141040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTTTACTAATGTATAATGGGAATGAGTTATATCTCGTACTCAGAAATCTATTTATGGTGTTTACTCTTCTGTAATGGAAATCAAATGTGAATGTCCTCCTGTATTTTTAATTAATTCTATGATGTCTTATTTATTTTGAAAATTTATAAATTCAATTGTTGTTGTTAAATTAAATGCATTATATTTATATTATATGATATCACAAAATAATAATTATATATATAAAAAAAAATTAACATAAAACAACTTCATAAATTAATTAGCAAGTTTGTATCAAATCAAATATTGAATGAGTAATTATTGTTAGTTTTATAATTTAGGAAAAATTGCACAAACCACCCTTTAACTATAGGGCTAGTAACAATCACATCCACAAAATTTCAATTTGAACAATTATCCGGTATTGTTTTTTAAAGGTTCCAATCAAGTGCTTCTATTAAAATAGAATTTATTTATGAATTACTCACACATGGTTAAGAGGGTAAACTTGTCATATTGTTCTTCATTAAAGATGAATGCCCCCAGTCAATTTGGGATTTACGGGAAACCTTAACCCAGATTGATTAAGGTTTGTATGGCCATACCCCAAAGCTTAATCAATTTGTATGGCCACACCTCAAAGCTCTATACCTTTAGATCCTTGTGACGCTTTAGAGTACGGCCACCAAACAGAGACAGAAATTCATCATTTGTAAGAAGAGGGGATGAAGACACAAGAAAACAGAGCTGGGAGGCGCAACAATCGCAGCAGATACAGAGAGTGAAGCATCCGGACATGATAAGCAGCCATGTGAATGCGATTGGGAGTTCGGTGAAGGAGGATCAAGAGGAGCTTTCACTATCGACCTTGCCTCTGTTTCGAGCAAAGGAAGAGGAGATCGAGAGCAAGAAGATGGATATGAGAGAGAAGGTGGAGGAAGCGATGAAGTGTTGGGCATGACGTTCCATTGATTAGGGTTTCTGAAATTGATGAGAAAAATGGAACTGAAAATCAGAGGACAACTTTGCCCTTTCTGACTTATCCATACATAAATATTCATTTTACAAAAGAAGTTAATTGCAACTATTAAAAAATCATAGGATCCAACTACATAGTTTAGGGGTGTTTCGTGTAATTTTTCTTATAATAAATATATTATAAATATATTATCAAACATATTGTACAAAATTATTTAAATGAAAATTTAATTTTTCATCTACAATCAAACACCTATCTAAAAATACGAAATATAATTATATTTTTATTAATTTCCAATTGGCTCTCATTTCAACCATATCAATTAAATAATAGTAATATAATAATAATAATTGAGATAAGAATCCCGAGAAAGGCCTATCATGTGCATGCATGCAAAATCATCATAATATATATTATATAATATACATACACACACGTACTTTTATTCTGTACTTGGGGGCACATTTATTTTTCTTTTCTTTTCTTTTCTTTTTTTTTTTTTTTCTTTTTCTTTTTCCTTTCATTTTATTTTCTTGAGAAGACAGAGAGGCATACAAGTTGATATTTAATTTTCTGACCTCTTTTTATTATATTACATAATGGACATTGGATCATCTCATCGATCCTACCTTTTTTTTTTTTTTCTACCACATATTTACATATTCATATATGCGGTCTTCTTTTTATGTTAGCTGTGGAACTGGCCATTCAACTTTTAGACTTTACGAGAAGAACATGTCTAATTCACTTTGA

mRNA sequence

ATGGTAGTACGGCCACCAAACAGAGACAGAAATTCATCATTTGTAAGAAGAGGGGATGAAGACACAAGAAAACAGAGCTGGGAGGCGCAACAATCGCAGCAGATACAGAGAGTGAAGCATCCGGACATGATAAGCAGCCATGTGAATGCGATTGGGAGTTCGGTGAAGGAGGATCAAGAGGAGCTTTCACTATCGACCTTGCCTCTGTTTCGAGCAAAGGAAGAGGAGATCGAGAGCAAGAAGATGGATATGAGAGAGAAGGTGGAGGAAGCGATGAACTGTGGAACTGGCCATTCAACTTTTAGACTTTACGAGAAGAACATGTCTAATTCACTTTGA

Coding sequence (CDS)

ATGGTAGTACGGCCACCAAACAGAGACAGAAATTCATCATTTGTAAGAAGAGGGGATGAAGACACAAGAAAACAGAGCTGGGAGGCGCAACAATCGCAGCAGATACAGAGAGTGAAGCATCCGGACATGATAAGCAGCCATGTGAATGCGATTGGGAGTTCGGTGAAGGAGGATCAAGAGGAGCTTTCACTATCGACCTTGCCTCTGTTTCGAGCAAAGGAAGAGGAGATCGAGAGCAAGAAGATGGATATGAGAGAGAAGGTGGAGGAAGCGATGAACTGTGGAACTGGCCATTCAACTTTTAGACTTTACGAGAAGAACATGTCTAATTCACTTTGA

Protein sequence

MVVRPPNRDRNSSFVRRGDEDTRKQSWEAQQSQQIQRVKHPDMISSHVNAIGSSVKEDQEELSLSTLPLFRAKEEEIESKKMDMREKVEEAMNCGTGHSTFRLYEKNMSNSL

Homology

[Close]

BLAST of CcUC07G141040 vs. NCBI nr
Match: XP_038893849.1 (uncharacterized protein LOC120082661 [Benincasa hispida])

HSP 1 Score: 89.4 bits (220), Expect = 2.2e-14
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 22 TRKQSWEAQQSQQIQRVKHPD-MISSHVNAIGSSVKEDQ-EELSLSTLPLFRAKEEEIES 81
          T KQSWEAQQSQQ+QRVK+   MISS+VNAIGS VKEDQ EE+S S L +FRAKEEEIE 
Sbjct: 3  TPKQSWEAQQSQQMQRVKNSGVMISSNVNAIGSPVKEDQEEEISRSALAVFRAKEEEIER 62

Query: 82 KKMDMREKVE 90
          KKM+MREKVE
Sbjct: 63 KKMEMREKVE 72

[Close]

BLAST of CcUC07G141040 vs. NCBI nr
Match: XP_022142637.1 (uncharacterized protein LOC111012700 [Momordica charantia])

HSP 1 Score: 80.5 bits (197), Expect = 1.0e-11
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 22 TRKQSWEAQ-QSQQIQRVKHPDMISSHVNAIGSSVKEDQ-EELSLSTLPLFRAKEEEIES 81
          T+KQSWEAQ Q  Q+QRV++  MI SHVNAIGS +KEDQ EELS S   LFRAKEEEIE 
Sbjct: 3  TQKQSWEAQAQQSQMQRVRNSGMI-SHVNAIGSPLKEDQDEELSRSAFALFRAKEEEIER 62

Query: 82 KKMDMREKVE 90
          KKM+MR+KVE
Sbjct: 63 KKMEMRDKVE 71

[Close]

BLAST of CcUC07G141040 vs. NCBI nr
Match: XP_008461743.1 (PREDICTED: probable DNA double-strand break repair Rad50 ATPase [Cucumis melo] >KAA0040914.1 putative DNA double-strand break repair Rad50 ATPase [Cucumis melo var. makuwa] >TYK10622.1 putative DNA double-strand break repair Rad50 ATPase [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 3.0e-11
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 22 TRKQSWEAQQSQQIQRVKHPDMISSHV-NAIGSSVKEDQ-EELSLSTLPLFRAKEEEIES 81
          T+KQSWEA   QQ+QRVK+  MISS+V N IGS +KEDQ EE+S S L LFRAKEEEIE 
Sbjct: 3  TQKQSWEA---QQMQRVKNSGMISSNVNNGIGSPLKEDQEEEISRSALALFRAKEEEIER 62

Query: 82 KKMDMREKVE 90
          KKM+MREKVE
Sbjct: 63 KKMEMREKVE 69

[Close]

BLAST of CcUC07G141040 vs. NCBI nr
Match: XP_004139478.1 (uncharacterized protein LOC101203874 [Cucumis sativus] >KGN64906.1 hypothetical protein Csa_022823 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 5.1e-11
Identity = 50/71 (70.42%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 22 TRKQSWEAQQSQQIQRVKHPDMISSHVN--AIGSSVKEDQ-EELSLSTLPLFRAKEEEIE 81
          T+KQSWEA   QQ+QRVK+  MISS+VN   IGS +KEDQ EE+S S L LFRAKEEEIE
Sbjct: 3  TQKQSWEA---QQMQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEEIE 62

Query: 82 SKKMDMREKVE 90
           KKM+MREKVE
Sbjct: 63 RKKMEMREKVE 70

[Close]

BLAST of CcUC07G141040 vs. NCBI nr
Match: XP_022970344.1 (uncharacterized protein LOC111469338 [Cucurbita maxima])

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 47/72 (65.28%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 22 TRKQSWEAQQSQQIQRVKHPDMISSHVNAIGSSVKEDQ-EELSLSTLPLFRAKEEEIESK 81
          T+KQSWEAQQSQ  QRVK          AIGS  +EDQ EELS S L LFRAKEEEIE K
Sbjct: 3  TQKQSWEAQQSQMQQRVK---------KAIGSPAREDQEEELSRSALALFRAKEEEIERK 62

Query: 82 KMDMREKVEEAM 93
          KM+MREKVE  +
Sbjct: 63 KMEMREKVENRL 65

[Close]

BLAST of CcUC07G141040 vs. ExPASy TrEMBL
Match: A0A6J1CNF1 (RAB6-interacting golgin OS=Momordica charantia OX=3673 GN=LOC111012700 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 5.0e-12
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 22 TRKQSWEAQ-QSQQIQRVKHPDMISSHVNAIGSSVKEDQ-EELSLSTLPLFRAKEEEIES 81
          T+KQSWEAQ Q  Q+QRV++  MI SHVNAIGS +KEDQ EELS S   LFRAKEEEIE 
Sbjct: 3  TQKQSWEAQAQQSQMQRVRNSGMI-SHVNAIGSPLKEDQDEELSRSAFALFRAKEEEIER 62

Query: 82 KKMDMREKVE 90
          KKM+MR+KVE
Sbjct: 63 KKMEMRDKVE 71

[Close]

BLAST of CcUC07G141040 vs. ExPASy TrEMBL
Match: A0A5D3CH78 (RAB6-interacting golgin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G001010 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.4e-11
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 22 TRKQSWEAQQSQQIQRVKHPDMISSHV-NAIGSSVKEDQ-EELSLSTLPLFRAKEEEIES 81
          T+KQSWEA   QQ+QRVK+  MISS+V N IGS +KEDQ EE+S S L LFRAKEEEIE 
Sbjct: 3  TQKQSWEA---QQMQRVKNSGMISSNVNNGIGSPLKEDQEEEISRSALALFRAKEEEIER 62

Query: 82 KKMDMREKVE 90
          KKM+MREKVE
Sbjct: 63 KKMEMREKVE 69

[Close]

BLAST of CcUC07G141040 vs. ExPASy TrEMBL
Match: A0A1S3CFV6 (RAB6-interacting golgin OS=Cucumis melo OX=3656 GN=LOC103500274 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.4e-11
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 22 TRKQSWEAQQSQQIQRVKHPDMISSHV-NAIGSSVKEDQ-EELSLSTLPLFRAKEEEIES 81
          T+KQSWEA   QQ+QRVK+  MISS+V N IGS +KEDQ EE+S S L LFRAKEEEIE 
Sbjct: 3  TQKQSWEA---QQMQRVKNSGMISSNVNNGIGSPLKEDQEEEISRSALALFRAKEEEIER 62

Query: 82 KKMDMREKVE 90
          KKM+MREKVE
Sbjct: 63 KKMEMREKVE 69

[Close]

BLAST of CcUC07G141040 vs. ExPASy TrEMBL
Match: A0A0A0LY59 (RAB6-interacting golgin OS=Cucumis sativus OX=3659 GN=Csa_1G153510 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.5e-11
Identity = 50/71 (70.42%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 22 TRKQSWEAQQSQQIQRVKHPDMISSHVN--AIGSSVKEDQ-EELSLSTLPLFRAKEEEIE 81
          T+KQSWEA   QQ+QRVK+  MISS+VN   IGS +KEDQ EE+S S L LFRAKEEEIE
Sbjct: 3  TQKQSWEA---QQMQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEEIE 62

Query: 82 SKKMDMREKVE 90
           KKM+MREKVE
Sbjct: 63 RKKMEMREKVE 70

[Close]

BLAST of CcUC07G141040 vs. ExPASy TrEMBL
Match: A0A6J1I589 (RAB6-interacting golgin OS=Cucurbita maxima OX=3661 GN=LOC111469338 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.1e-10
Identity = 47/72 (65.28%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 22 TRKQSWEAQQSQQIQRVKHPDMISSHVNAIGSSVKEDQ-EELSLSTLPLFRAKEEEIESK 81
          T+KQSWEAQQSQ  QRVK          AIGS  +EDQ EELS S L LFRAKEEEIE K
Sbjct: 3  TQKQSWEAQQSQMQQRVK---------KAIGSPAREDQEEELSRSALALFRAKEEEIERK 62

Query: 82 KMDMREKVEEAM 93
          KM+MREKVE  +
Sbjct: 63 KMEMREKVENRL 65

[Close]

BLAST of CcUC07G141040 vs. TAIR 10
Match: AT2G27740.1 (Family of unknown function (DUF662) )

HSP 1 Score: 45.1 bits (105), Expect = 4.4e-05
Identity = 32/84 (38.10%), Postives = 51/84 (60.71%), Query Frame = 0


Query: 22  TRKQSWEAQQSQQIQRVKHPDMISSHVNAIGSSVKEDQEELSLSTLPLFRAKEEEIESKK 81
           T +Q  E  QS  IQR+K    IS + + +   + E +EELS S   LF+AKE+EIE +K
Sbjct: 3   TTRQILEQPQSPFIQRIKSSGNISMNGSPM---IDEKEEELSQSAFALFKAKEDEIERRK 62

Query: 82  MDMREKVEEAMNCGTGHSTFRLYE 106
           M+++++V++ +      +T RL E
Sbjct: 63  MEVKDRVQKKLGLAE-EATRRLAE 82

[Close]

BLAST of CcUC07G141040 vs. TAIR 10
Match: AT5G03660.1 (Family of unknown function (DUF662) )

HSP 1 Score: 43.9 bits (102), Expect = 9.9e-05
Identity = 26/58 (44.83%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 32 SQQIQRVKHPDMISSHVNAIGSSVKEDQEELSLSTLPLFRAKEEEIESKKMDMREKVE 90
          S Q +R+K  D +S  + +  S +K++ +ELS+  L  F+AKEEEIE KKM++RE+V+
Sbjct: 12 SDQGRRLK--DQLSESM-SFSSQMKKEDDELSMKALSAFKAKEEEIEKKKMEIRERVQ 66

[Close]

BLAST of CcUC07G141040 vs. TAIR 10
Match: AT5G03660.2 (Family of unknown function (DUF662) )

HSP 1 Score: 43.9 bits (102), Expect = 9.9e-05
Identity = 26/58 (44.83%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 32 SQQIQRVKHPDMISSHVNAIGSSVKEDQEELSLSTLPLFRAKEEEIESKKMDMREKVE 90
          S Q +R+K  D +S  + +  S +K++ +ELS+  L  F+AKEEEIE KKM++RE+V+
Sbjct: 12 SDQGRRLK--DQLSESM-SFSSQMKKEDDELSMKALSAFKAKEEEIEKKKMEIRERVQ 66

[Close]

BLAST of CcUC07G141040 vs. TAIR 10
Match: AT3G09980.1 (Family of unknown function (DUF662) )

HSP 1 Score: 40.8 bits (94), Expect = 8.4e-04
Identity = 24/68 (35.29%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 25 QSWEAQQSQQIQRVKHPDMISSHVN---AIGSSVKEDQEELSLSTLPLFRAKEEEIESKK 84
          Q+ E  Q   +    H   + + ++   +  S + ++ EE+S + L  FRAKEEEIE KK
Sbjct: 5  QAIETSQPTTVAPAVHSRQLGAQLSGSMSFSSQMSKEDEEMSRTALSAFRAKEEEIEKKK 64

Query: 85 MDMREKVE 90
          M++RE+V+
Sbjct: 65 MEIRERVQ 72

The following BLAST results are available for this feature:

BLAST of CcUC07G141040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893849.1	2.2e-14	77.14	uncharacterized protein LOC120082661 [Benincasa hispida]	[more]
XP_022142637.1	1.0e-11	71.43	uncharacterized protein LOC111012700 [Momordica charantia]	[more]
XP_008461743.1	3.0e-11	71.43	PREDICTED: probable DNA double-strand break repair Rad50 ATPase [Cucumis melo] >...	[more]
XP_004139478.1	5.1e-11	70.42	uncharacterized protein LOC101203874 [Cucumis sativus] >KGN64906.1 hypothetical ...	[more]
XP_022970344.1	1.3e-09	65.28	uncharacterized protein LOC111469338 [Cucurbita maxima]	[more]

BLAST of CcUC07G141040 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC07G141040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNF1	5.0e-12	71.43	RAB6-interacting golgin OS=Momordica charantia OX=3673 GN=LOC111012700 PE=3 SV=1	[more]
A0A5D3CH78	1.4e-11	71.43	RAB6-interacting golgin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CFV6	1.4e-11	71.43	RAB6-interacting golgin OS=Cucumis melo OX=3656 GN=LOC103500274 PE=3 SV=1	[more]
A0A0A0LY59	2.5e-11	70.42	RAB6-interacting golgin OS=Cucumis sativus OX=3659 GN=Csa_1G153510 PE=3 SV=1	[more]
A0A6J1I589	6.1e-10	65.28	RAB6-interacting golgin OS=Cucurbita maxima OX=3661 GN=LOC111469338 PE=3 SV=1	[more]

BLAST of CcUC07G141040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27740.1	4.4e-05	38.10	Family of unknown function (DUF662)	[more]
AT5G03660.1	9.9e-05	44.83	Family of unknown function (DUF662)	[more]
AT5G03660.2	9.9e-05	44.83	Family of unknown function (DUF662)	[more]
AT3G09980.1	8.4e-04	35.29	Family of unknown function (DUF662)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007033	RAB6-interacting golgin	PFAM	PF04949	Transcrip_act	coord: 52..92 e-value: 4.2E-8 score: 33.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC07G141040.1	CcUC07G141040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016020	membrane