CcUC07G138640 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC07G138640
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Leucyl/phenylalanyl-tRNA--protein transferase
Location	CicolChr07: 24497200 .. 24498029 (-)
RNA-Seq Expression	CcUC07G138640
Synteny	CcUC07G138640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCAGTTAAGCACTAGTTTTGCATATTGTTTAAACCATTAATCTCATCGACTATAGAAAACCAGCTAATACACCCCTAGTAACAGTCATTAAAATACCAGAACTTGTTCATTTAAGTCCTTATGTGTAAAAGTTACTCTAATAAAACTTCTAACAAAAATAGCCAAAAGAATATGTGCAACCATGCACCGGCTTCAGACATTAAATATAAATTCAACTGATTGAAATGTAATTTGCGCAATCCAAAACACCAAAACAAACTACATTCGTAATATAGAACGTACAGTAACTCGAAAACAAAAAATAAAGTTGCTCAGTAACCTAATACGAGAGTAATCCAGAACAAACCCATAACTGAACGACCCACTTCAGAACCTGAGCTTGGTGAAAAACCACCTGTTCTTCCCGGTTTTGAACCTTTCCTCGAACCTCTTCTTGGTCTCCTTGGCGGCGGTGACCTTCTTGTCCTTGGATTGCAAGGAATCGATAGTGACAACGTCTTTAAGATCGACATCGAGTGTGTACCTGGTGGGCATCAGGTGCCTGTAGTTGACGAGCTTGATGAAGGCCTTGACTCGGGATTTCTTAGCGGTCTTCTTGGCTGAGTCCTTACGAATGACCTTGGCCGGGTACTTTTTTATTCCGGCGACTAAGCAGTGGCCATAAGCCCGATCCCGAGTTCCGTCGTCGAAGGCGCGAACGATGACCGCCTTCCGACCGGCGTAACGGCCTTGAAGGACGATAACGGCTTTGTTCGGCTTGAGGAACTTCACCATTTTCGGATTTCTCCTCTCTGTGCTTCTCCCTTCTCGACGGCTCTCCTCTAA

mRNA sequence

ATGGTGCAAGTAATCCAGAACAAACCCATAACTGAACGACCCACTTCAGAACCTGAGCTTGGTGAAAAACCACCTGTTCTTCCCGGTTTTGAACCTTTCCTCGAACCTCTTCTTGGTCTCCTTGGCGGCGGTGACCTTCTTGTCCTTGGATTGCAAGGAATCGATAGTGACAACGTCTTTAAGATCGACATCGAGTGTGTACCTGGTGGGCATCAGGTGCCTGTAGTTGACGAGCTTGATGAAGGCCTTGACTCGGGATTTCTTAGCGTGGCCATAAGCCCGATCCCGAGTTCCGTCGTCGAAGGCGCGAACGATGACCGCCTTCCGACCGGCGTAACGGCCTTGAAGGACGATAACGGCTTTGTTCGGCTTGAGGAACTTCACCATTTTCGGATTTCTCCTCTCTGTGCTTCTCCCTTCTCGACGGCTCTCCTCTAA

Coding sequence (CDS)

ATGGTGCAAGTAATCCAGAACAAACCCATAACTGAACGACCCACTTCAGAACCTGAGCTTGGTGAAAAACCACCTGTTCTTCCCGGTTTTGAACCTTTCCTCGAACCTCTTCTTGGTCTCCTTGGCGGCGGTGACCTTCTTGTCCTTGGATTGCAAGGAATCGATAGTGACAACGTCTTTAAGATCGACATCGAGTGTGTACCTGGTGGGCATCAGGTGCCTGTAGTTGACGAGCTTGATGAAGGCCTTGACTCGGGATTTCTTAGCGTGGCCATAAGCCCGATCCCGAGTTCCGTCGTCGAAGGCGCGAACGATGACCGCCTTCCGACCGGCGTAACGGCCTTGAAGGACGATAACGGCTTTGTTCGGCTTGAGGAACTTCACCATTTTCGGATTTCTCCTCTCTGTGCTTCTCCCTTCTCGACGGCTCTCCTCTAA

Protein sequence

MVQVIQNKPITERPTSEPELGEKPPVLPGFEPFLEPLLGLLGGGDLLVLGLQGIDSDNVFKIDIECVPGGHQVPVVDELDEGLDSGFLSVAISPIPSSVVEGANDDRLPTGVTALKDDNGFVRLEELHHFRISPLCASPFSTALL

Homology

[Close]

BLAST of CcUC07G138640 vs. NCBI nr
Match: RCV17107.1 (hypothetical protein SETIT_3G193200v2 [Setaria italica])

HSP 1 Score: 99.4 bits (246), Expect = 2.8e-17
Identity = 59/140 (42.14%), Postives = 78/140 (55.71%), Query Frame = 0


Query: 17  EPELGEKPPVLPGFEPFLEPLLGLLGGGDLLVLGLQ--GIDSDNVFKIDIECVPGGHQVP 76
           E ELG++PPVL   EP LE   G L GGDLLV G +  G    +V ++D+E V GGH V 
Sbjct: 8   EAELGKEPPVLACLEPLLEARFGGLAGGDLLVPGGERVGPARGDVLEVDVEGVAGGHDVG 67

Query: 77  VVDELDEGLDSGFL----------------------SVAISPIPSSVVEGANDDRLPTGV 133
            VDELDE LD+G L                      +VA+  +  +++E A+D RLP G 
Sbjct: 68  EVDELDEALDTGLLGRLLGGILADHLLGVLGEAGDEAVAVGAVAGALLEHAHDHRLPAGE 127

[Close]

BLAST of CcUC07G138640 vs. NCBI nr
Match: KAF8733546.1 (hypothetical protein HU200_014848 [Digitaria exilis])

HSP 1 Score: 98.6 bits (244), Expect = 4.7e-17
Identity = 60/137 (43.80%), Postives = 76/137 (55.47%), Query Frame = 0


Query: 17  EPELGEKPPVLPGFEPFLEPLLGLLGGGDLLVLGLQ--GIDSDNVFKIDIECVPGGHQVP 76
           E ELG++PPVL   EP LE  LG L GG LLV G +  G    +V ++D+E V GGH V 
Sbjct: 27  EAELGKEPPVLACLEPLLEAGLGSLAGGHLLVPGGERVGPAGGDVLEVDVEGVAGGHDVG 86

Query: 77  VVDELDEGLDSGFL----------------------SVAISPIPSSVVEGANDDRLPTGV 130
            VDELDE LD G L                      +V +  +  S++E A+D RLPTG 
Sbjct: 87  EVDELDEALDPGLLGRLLGGVLADHLLGVLCEAGDEAVPVGAVAGSLLEHAHDHRLPTGE 146

[Close]

BLAST of CcUC07G138640 vs. NCBI nr
Match: PVH47807.1 (hypothetical protein PAHAL_4G157800 [Panicum hallii])

HSP 1 Score: 98.2 bits (243), Expect = 6.1e-17
Identity = 58/140 (41.43%), Postives = 78/140 (55.71%), Query Frame = 0


Query: 17  EPELGEKPPVLPGFEPFLEPLLGLLGGGDLLVLGLQ--GIDSDNVFKIDIECVPGGHQVP 76
           E ELG++PPVL G EP  E  LG L  GDLLV G +  G    +V ++D+E V GGH V 
Sbjct: 8   EAELGKEPPVLAGLEPLFEARLGGLARGDLLVPGGERVGPARGDVLEVDVEGVAGGHDVG 67

Query: 77  VVDELDEGLDSGFL----------------------SVAISPIPSSVVEGANDDRLPTGV 133
            VDELDE LD+G L                      +VA+  +  +++E A+D RL  G 
Sbjct: 68  EVDELDEALDAGLLGGLLGGVLADHLLGVLGQAGDEAVAVGAVAGALLEHAHDHRLAAGE 127

[Close]

BLAST of CcUC07G138640 vs. NCBI nr
Match: KAF8643655.1 (hypothetical protein HU200_066711 [Digitaria exilis])

HSP 1 Score: 97.8 bits (242), Expect = 8.0e-17
Identity = 59/137 (43.07%), Postives = 76/137 (55.47%), Query Frame = 0


Query: 17  EPELGEKPPVLPGFEPFLEPLLGLLGGGDLLVLGLQGI--DSDNVFKIDIECVPGGHQVP 76
           E ELG++PPVL   EP LE  LG L GG LLV G + +     +V ++D+E V GGH V 
Sbjct: 7   EAELGKEPPVLACLEPLLEAGLGSLAGGHLLVPGGERVRPAGGDVLEVDVEGVAGGHDVG 66

Query: 77  VVDELDEGLDSGFL----------------------SVAISPIPSSVVEGANDDRLPTGV 130
            VDELDE LD G L                      +V +  +  S++E A+D RLPTG 
Sbjct: 67  EVDELDEALDPGLLGRLLGGVLADHLLGVLGEAGDEAVPVGAVAGSLLEHAHDHRLPTGE 126

[Close]

BLAST of CcUC07G138640 vs. NCBI nr
Match: KHG19439.1 (Leucyl/phenylalanyl-tRNA--protein transferase [Gossypium arboreum] >KHG27864.1 Leucyl/phenylalanyl-tRNA--protein transferase [Gossypium arboreum])

HSP 1 Score: 95.1 bits (235), Expect = 5.2e-16
Identity = 55/130 (42.31%), Postives = 74/130 (56.92%), Query Frame = 0


Query: 17  EPELGEKPPVLPGFEPFLEPLLGLLGGGDLLVLGLQGIDSDNVFKIDIECVPGGHQVPVV 76
           +P+LG++PPV   FEP  +PL   L  G  LVLGL+ +D D VF++D+E V  GHQV VV
Sbjct: 9   KPKLGKEPPVFSCFEPLFQPLFDSLTSGYFLVLGLKRVDGDGVFQVDVEGVSCGHQVLVV 68

Query: 77  DELDEGLDSGFL----------------------SVAISPIPSSVVEGANDDRLPTGVTA 125
            ELDE LD+ FL                      +VAI  +  +VVEG  D    +GV+A
Sbjct: 69  HELDEALDARFLGGFLGGVLEDDLARVLFYPRDQTVAIGTVTCAVVEGFYDHSFASGVSA 128

[Close]

BLAST of CcUC07G138640 vs. ExPASy TrEMBL
Match: A0A7C8ZHJ5 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 7.6e-21
Identity = 60/136 (44.12%), Postives = 78/136 (57.35%), Query Frame = 0


Query: 17  EPELGEKPPVLPGFEPFLEPLLGLLGGGDLLVLGLQGIDSDNVFKIDIECVPGGHQVPVV 76
           EPELGE+PP+    +P LEP LGLL   DLLV  L+ I  ++V +IDIE +  GH V +V
Sbjct: 13  EPELGEEPPIFASLKPLLEPSLGLLSSSDLLVTRLKSIRGNDVLQIDIESISSGHDVVIV 72

Query: 77  DELDEGLDSGFL----------------------SVAISPIPSSVVEGANDDRLPTGVTA 131
           DELDE L+  FL                      +VA+  +P +VVEG +DD   T +TA
Sbjct: 73  DELDEALNPRFLGLLFCGVFANDLLRVLGYAGDEAVAVWTVPCAVVEGTDDDAFATRITA 132

[Close]

BLAST of CcUC07G138640 vs. ExPASy TrEMBL
Match: A0A368QGJ6 (Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_3G193200v2 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.3e-17
Identity = 59/140 (42.14%), Postives = 78/140 (55.71%), Query Frame = 0


Query: 17  EPELGEKPPVLPGFEPFLEPLLGLLGGGDLLVLGLQ--GIDSDNVFKIDIECVPGGHQVP 76
           E ELG++PPVL   EP LE   G L GGDLLV G +  G    +V ++D+E V GGH V 
Sbjct: 8   EAELGKEPPVLACLEPLLEARFGGLAGGDLLVPGGERVGPARGDVLEVDVEGVAGGHDVG 67

Query: 77  VVDELDEGLDSGFL----------------------SVAISPIPSSVVEGANDDRLPTGV 133
            VDELDE LD+G L                      +VA+  +  +++E A+D RLP G 
Sbjct: 68  EVDELDEALDTGLLGRLLGGILADHLLGVLGEAGDEAVAVGAVAGALLEHAHDHRLPAGE 127

[Close]

BLAST of CcUC07G138640 vs. ExPASy TrEMBL
Match: A0A2T8JD06 (Uncharacterized protein OS=Panicum hallii OX=206008 GN=PAHAL_4G157800 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.0e-17
Identity = 58/140 (41.43%), Postives = 78/140 (55.71%), Query Frame = 0


Query: 17  EPELGEKPPVLPGFEPFLEPLLGLLGGGDLLVLGLQ--GIDSDNVFKIDIECVPGGHQVP 76
           E ELG++PPVL G EP  E  LG L  GDLLV G +  G    +V ++D+E V GGH V 
Sbjct: 8   EAELGKEPPVLAGLEPLFEARLGGLARGDLLVPGGERVGPARGDVLEVDVEGVAGGHDVG 67

Query: 77  VVDELDEGLDSGFL----------------------SVAISPIPSSVVEGANDDRLPTGV 133
            VDELDE LD+G L                      +VA+  +  +++E A+D RL  G 
Sbjct: 68  EVDELDEALDAGLLGGLLGGVLADHLLGVLGQAGDEAVAVGAVAGALLEHAHDHRLAAGE 127

[Close]

BLAST of CcUC07G138640 vs. ExPASy TrEMBL
Match: A0A1J3FXG3 (Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=LC_TR9208_c0_g1_i1_g.33021 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.0e-17
Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = 0


Query: 16  SEPELGEKPPVLPGFEPFLEPLLGLLGGGDLLVLGLQGIDSDNVFKIDIECVPGGHQVPV 75
           SEPELGE+PPVLP  E  LE  LG L   DLL+LGL+ I+S ++ +I +ECV   HQ+ +
Sbjct: 34  SEPELGEEPPVLPSPETLLELSLGFLKRSDLLILGLKRIESRDILEIYVECVASRHQMLI 93

Query: 76  VDELDEGLDSGFL----------------------SVAISPIPSSVVEGANDDRLPTGVT 130
           + ELDE  D+GFL                      +V++  +  SVVE  +D  L  G+ 
Sbjct: 94  IHELDETFDTGFLRRLLRRVLADDFARVLLQPGDEAVSVRTLAVSVVERFDDHGLLPGIA 153

[Close]

BLAST of CcUC07G138640 vs. ExPASy TrEMBL
Match: A0A0B0PTV9 (Leucyl/phenylalanyl-tRNA--protein transferase OS=Gossypium arboreum OX=29729 GN=F383_04002 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.5e-16
Identity = 55/130 (42.31%), Postives = 74/130 (56.92%), Query Frame = 0


Query: 17  EPELGEKPPVLPGFEPFLEPLLGLLGGGDLLVLGLQGIDSDNVFKIDIECVPGGHQVPVV 76
           +P+LG++PPV   FEP  +PL   L  G  LVLGL+ +D D VF++D+E V  GHQV VV
Sbjct: 9   KPKLGKEPPVFSCFEPLFQPLFDSLTSGYFLVLGLKRVDGDGVFQVDVEGVSCGHQVLVV 68

Query: 77  DELDEGLDSGFL----------------------SVAISPIPSSVVEGANDDRLPTGVTA 125
            ELDE LD+ FL                      +VAI  +  +VVEG  D    +GV+A
Sbjct: 69  HELDEALDARFLGGFLGGVLEDDLARVLFYPRDQTVAIGTVTCAVVEGFYDHSFASGVSA 128

The following BLAST results are available for this feature:

BLAST of CcUC07G138640 vs. NCBI nr


Match Name	E-value	Identity	Description
RCV17107.1	2.8e-17	42.14	hypothetical protein SETIT_3G193200v2 [Setaria italica]	[more]
KAF8733546.1	4.7e-17	43.80	hypothetical protein HU200_014848 [Digitaria exilis]	[more]
PVH47807.1	6.1e-17	41.43	hypothetical protein PAHAL_4G157800 [Panicum hallii]	[more]
KAF8643655.1	8.0e-17	43.07	hypothetical protein HU200_066711 [Digitaria exilis]	[more]
KHG19439.1	5.2e-16	42.31	Leucyl/phenylalanyl-tRNA--protein transferase [Gossypium arboreum] >KHG27864.1 L...	[more]

BLAST of CcUC07G138640 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC07G138640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7C8ZHJ5	7.6e-21	44.12	Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1	[more]
A0A368QGJ6	1.3e-17	42.14	Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_3G193200v2 PE=4 SV=1	[more]
A0A2T8JD06	3.0e-17	41.43	Uncharacterized protein OS=Panicum hallii OX=206008 GN=PAHAL_4G157800 PE=4 SV=1	[more]
A0A1J3FXG3	3.0e-17	41.18	Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=LC_TR920...	[more]
A0A0B0PTV9	2.5e-16	42.31	Leucyl/phenylalanyl-tRNA--protein transferase OS=Gossypium arboreum OX=29729 GN=...	[more]

BLAST of CcUC07G138640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC07G138640.1	CcUC07G138640.1	mRNA