CcUC07G134850 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC07G134850
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description30S ribosomal protein S12, chloroplastic
LocationCicolChr07: 12375419 .. 12380839 (+)
RNA-Seq ExpressionCcUC07G134850
SyntenyCcUC07G134850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGATCTCCATATCGGTGTTTTTTTATGGATTGCCATTTCAAGTGTTGCTCCTATCGGACTTCTTATGTCAGGATATGGATCCAATAATAAATATTCCTTTTTAGGTGGTCTACGAGCTGCTGCTCAATCAATTAGTTATGAAATACCATTAACTCTATGTGTATTATCAATATCTCTACATGTGATTCGTTGAGACATAAACTTCTCCCACTTTTTTTCGAGAAAAGGAGTGAAATGAATTGAATAGATATCTTCATTTTTATATTAATTATTTGGATTAATGAACTAAATCAGATAGTTATATGAGTGAAAGAAAACGGCTTATATAAATAAAAATTAGCAGTCAAAATATTGAGTCTCATAATTATGCATCCATGAGCATTTTTGCGAAAGGTTATTCAAGAGAAATCCAAGTGATAAAAACATCCATAGGTTCCATAACCATTCTATTTGATAAAAAGGAGGGAGGAGCACGTAGTATTAGGATCCAGCCAATGTTTGGGGAACAGGAACCCTGTTGATTCACACTCCACATAACCCTGCGAAAGGTGATGTTCGTCAGCACTTGTTTATTCCATATGGTGAATAATAATAAGATGAATGAGACTTCAATTACTATGCTATATCTATAAGAGAACGTACAAATGTATAACTCATTGTTCAAGGCGATGATCCCTAAAGCCGCTATAATGGATTTAGTATGTTTAACTCATTGGCTTTTTCCTTGTCCAATTTTGGAAGGGATTGAATCCCTTTGAGCAATCCCATCGGCTTTCTCGTAGGTGGTCAGTTCCCCCGGTACGAAATTTCACTATAATTAATCACCCAACCATCATAATTCTTTCCTATTAGCCCACTCTCTTTTTACATAGCCAACTAGTTGGTGTACTCTTCCTTGACGCTGACTCGATAGAAGTCAAGCCCTTTGTCTCCAAAAGAATGGTCTCGATCTTCTTCTTTCTTAGCATTATTGTAAACCATTTGATCCTAGTCGTCTTGCGTGGAAGGAGCCAGATGACAGAGATTTTGCTTTTCTCACCCCCGTCCGACCACCCAATCGATGAAGACTCGAACCTAACCACCCCGCTTTTGGAGATGACGGAGACTTTACTCGACGTCTTGACCTATCCATAGTCTGCTAATCTAATCTCAACGTCTTTAATCCTGACAAGCTTGTCTCGGACGAGATCTCTGTCTTTTGTTTGTTACACAACACTGAATGTACTGTTCCTTTGTTCTTCTGGCTATGGTTCTTTCGATTCTTCTTTCTGACCTTTTGATTTATGGTCTGGCCTTTTTCAACCTCTGATACTCCACCTGTATCAGAATACGAGCCTTGTTCAACTGTGCCCATGGACCCGTAAGCCCTCGAGGCAAGGCAAAAAGGAAGCGATGCTCTTGCTTTCTTTGGTCTTGAACTCGTTCCCGCTCGAGAATGAATGTTGGAAACTCTTCGATGACATGCTCCTTTGAGTGCAAAATGATTCCTTAGCTGTGCCTGTTTGGTACCGAGCTCTTTGAGGGCCTTTCTTTATCCATTCACGCTAAAAGGTGAAATTTCCTGAAGGGAAAATTTGGTAACATGTGAGTGATTACAATCTATAAGTTTCTATTTCTCTACTCGGCCATCATAAATGGTTCCGGCGACGGCGGCGTAGGCAGGTTCGGGAGAATCCATTCAATCTTCTTCTTTTTTTTCTCTTTTTCTGAATTTTCCTCTCTTCGTTTTCACTATGGAACTCCCTCTTGAAAGATTTCCAGAAACTCGAGTCTTATTTCCTCTTCTTCTTTCGGTGGAGCTTCCTCTCTAGGTTCTTCTTGCAGCCTTATCCCTTTCATTCTTCTTCCCTTAGGATCGCCTTTGGGAATAGAATCCATTCATGAGCATTATTTGGATGTGTCTGTCAGGTTCGGTTCTTCTTAGTTGGGTTGGGCGAGTTCGACCAGAAATGCTATGCTTACACACAAGACTACCCCTCTTCCCGAAAGCTTCGCGGGGACTACTTTACGACGACGGAAGACCGCCCGTAGGGGGTTTACTGAACAAGGCCCCTGCAGAGGAAAAGCTTGATCCCAGCGAATAGAAGATGCTCAGCTCCGCACAACATAGGGATTGGCATGCTTTCGGGAAGAACATAGAATAGTAGAGGATCCAGCATGCGGAACACGGCGATCATTAGAAATTCACGAATTAGAGATGCTGTAATATACTCTTTCCCATAACTTCTCATACCAGACCAACCCACTAAAATGCAAATAGGGATCAGAAATGTGGTCAATATCACGAAGAATAAAGAGATACCGTCTATACCCAAATAAAAATTGATGTGCCATATTTATTGACAACCCATTCATTTGTGGCCGAGCTACATCAGAAAAAACATTGCAAAAGAAACTTGCCACTAGGGCCTTGCCCATATGGATAACAGCTACTCACATCACCGTCGATAAGCTAGTAAAAAGCTTCGTCGCAGAATGAATAACTTCCATAATATGCTACAATAACCATAAATCGCGATAGTTGCTTATTTTCTTTTCGCAAACAATTACATAGTATCATCCATGGATCACCCTTATCCTTCTCGTTTCCAAGGGACTTGGTCGCCAATCTAAGACTTTGACGAACGAAATCGTCACTTTGGTTAGCAGTGGGCCCATCATAGGTGCATGCAATAGGATTATTATGCTATATCAACTTGATCTAAATTAGGATTAACATTGCGACTGTTGATTTTGTTTGTCTCATGGTAGTCTGCACCATGAAACATCCATCCTGAACAGTTAATTTTTCCTCTTGTATAAGTCCTGAAACCAAACTCTGCTTTACGTAAAGTTGCCAGAGTACGCTTAACCTCAGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAGATTCTTATCCAAGACTTGTATCATTTGATGATGCCATGTGAATCACTAGAAACATTTGAAGTGTATGGCTAACCCAATAACGAAAGTTTCGTAAGGGAACTGGAGCAGGCTACCATGAGACAAACAAAAGATCTTCTTTCTAAAGAGATTCGATTCGGAACCAATATTTATAGAGATCCAAAGGTTATGGAAAAAAGGCGAAATAAGCTAGAACTGTTTCTTGTTCACATTACTACGTTAAATAAAGACAGGGTCGGCAAGTTCCACCCAAAGGGATCCCAGCCAGGGTTGACCACTCGGGGATTAGTTTTCACCTTGGATAGATAGAGAAGGAGGGCAGAGCTTTTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATGGTTTTTTCGTGTTGTCAAAGAGTTGAACAATGAAAATAGATGGCGAGTGCCTAATCGAATTGATCGGGTCATGTAGGAACAAGGTTCAAGTCTACCGGTCTGTTAGGATGCCTCAGCTGCATACATCACTGCACTTCCAAGTGACACCTATCGTGATGATGAACCAAATCAAGTGGCCAGTTACAAACAATACACTTTTCAAGGATGCCTTGTTAATTGACTATGCAAAGGGCGCAATAGTATAAGGTTACCTGTTATATGGTTAATTATTTGATACTATAATTCAAAGGATGCCTATACAAAAAGAACTTCTTGCGCAATTCATGCCTTTCTGTTTTTATGACCAGAAATTGTTTCTTGATTTCCATTTCAAATTGTTCTTTGGACTTTTTATCAATATGAGGTGATCGTAACACAGTATAGTTGACTCGTGATTCAGGCAATCCAATCTTCCGTGTGTAAGGCAGAAGCCCCCAAAAATGGTTTTCAAAAAATGGGTGATCAAAAGATCGAATCACTATGCGTATCTTAGTGGTCGTGACTTTTGGTGGTCTTTCTTTTTGGCTTACTCCTCTTCCTGTTCTATTGATCAGAAGCATCCAGCAGCGCCACGCCGGTTTAGAATTCGATTCTCAGGGCTAAGGCTCTCCTTATCCCCCTCCCTTTTCTTTCCTCCCTAGCCATGTGTGGGCCACACTTCTTCAAGGCCCTACAGGGGTCTTTCACTTACTTGTGTGAGCCCCCCGCCCGCTCACGCTCCTTACCAACAACCCGGCGCTTCGCCGGAACACACCATAGGTTAGTCCAACAACCAGTGGGCTCCTCGCCGCTACACATTAGCAGAAAAAAGCGAGTGAATAGCCAGTCCCATGCATTTGTTAGTGAATGGCCACTCTCTTCCCCTAAAGGGGCAATAATGATCCATATGGATGATCCACTACCATCTTCGAGTTAATATATTCAAGATAATTACGTATTTACAAAATACCGTCTCAATTCATCCTATTTCATCAGATCCGGGATGTGATATGGTTCCGAAGGATGAAATGGACAGTTCCTTTTTTGTTATTTAAGCGAAAAATGATGAAAACCAGATCGAACTCTAAAGTCAAACCTTTCATTCCTCTTGTTCAAATGCTTTCCCTTGGCTTCGGTGCCAGCTAGGACTGGTAGCATGGTCTTCTCTTAGGCTTTCTCTTGGTGGAGGAATGGGGATTTCACTTGGAAAAGAAATGGGAGAATGGTAAATCAATGACAAGAAACAGTTAATTTTACAATAACCTGCGAGTTTCTCTTGGGGCCTATCGAAAAGATCTTGAACTAATTTTTTCCTTGTTTTTTCACATAAGCCTATGTTTGCCTTTCGACAGAAACATTTCCCTTAACCGTAGTAGGCAGGCAGGTAAACTATATTGTTCCCAGAGGCTTTCTTTAAAGCATCAAAACTACGGGTATCACTGGCAGTTCCCGGGAAAGTTCTCTCGATCCGGCCAAAAAACGCAATTTCGACTCATCAAGATTCAATCTATTTGGGGGGTACTCACTGGTTAACCTATAAAGGATAGGTTACCCATATGGATCAACTCATGGAGGAAAAAGATCTTTTCAGACTAATGCTGCGCAAAAGAATATGTTTCTAAAAAAGAATAAGCACAAAGTGAGTGCAGAAGGACCTGAAAAACATAGAGTGTTGGTCCTGCAAGAAGAAAGGTCACTTGAGTTTTGAGTGCCCATAAAAGAAGGGCAAAGGGAAAAAAAAAGCCATGATGATCAGAAAAAGGTAGTGTTGGTCACTACGTTGGCCCTGTTTGCCAACATTTCAGATAGCATAGCTATATCTCATTGAAGTATAGTGCCGATATTTCTACCATTATTAATTGTAAATTAGAAATTAATCAAATAATCCAAGGATATTATTTATTTCATCTAAAGCAATAAGTAACCGGACTTGACTTTCCTCTCCGGGATTTCGAAGAGGAAGATGCATCGTGGATTGACGTA

mRNA sequence

CTGATCTCCATATCGGTGTTTTTTTATGGATTGCCATTTCAAGTGTTGCTCCTATCGGACTTCTTATGTCAGGATATGGATCCAATAATAAATATTCCTTTTTAGGTGGTCTACGAGCTGCTGCTCAATCAATTATCCTGAAACCAAACTCTGCTTTACGTAAAGTTGCCAGAGTACGCTTAACCTCAGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGACCATGTGTGGGCCACACTTCTTCAAGGCCCTACAGGGGTCTTTCACTTACTTGTGTGAGCCCCCCGCCCGCTCACGCTCCTTACCAACAACCCGGCGCTTCGCCGGAACACACCATAGTAACCGGACTTGACTTTCCTCTCCGGGATTTCGAAGAGGAAGATGCATCGTGGATTGACGTA

Coding sequence (CDS)

ATGTCAGGATATGGATCCAATAATAAATATTCCTTTTTAGGTGGTCTACGAGCTGCTGCTCAATCAATTATCCTGAAACCAAACTCTGCTTTACGTAAAGTTGCCAGAGTACGCTTAACCTCAGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGACCATGTGTGGGCCACACTTCTTCAAGGCCCTACAGGGGTCTTTCACTTACTTGTGTGAGCCCCCCGCCCGCTCACGCTCCTTACCAACAACCCGGCGCTTCGCCGGAACACACCATAGTAACCGGACTTGACTTTCCTCTCCGGGATTTCGAAGAGGAAGATGCATCGTGGATTGACGTA

Protein sequence

MSGYGSNNKYSFLGGLRAAAQSIILKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGPCVGHTSSRPYRGLSLTCVSPPPAHAPYQQPGASPEHTIVTGLDFPLRDFEEEDASWIDV
Homology
[Close]
BLAST of CcUC07G134850 vs. NCBI nr
Match: YP_009945663.1 (30S ribosomal protein S12 [Flueggea virosa] >QOE56257.1 30S ribosomal protein S12 [Flueggea virosa])

HSP 1 Score: 131.3 bits (329), Expect = 6.7e-27
Identity = 64/72 (88.89%), Postives = 65/72 (90.28%), Query Frame = 0 

Query: 17  RAAAQSIILKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVR 76
           R     +  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVR
Sbjct: 31  RGTCTRVYQKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVR 90

Query: 77  YHIVRGTLDAVG 89
           YHIVRGTLDAVG
Sbjct: 91  YHIVRGTLDAVG 102

[Close]
BLAST of CcUC07G134850 vs. NCBI nr
Match: QVV41412.1 (30S ribosomal protein S12 [Bridelia tomentosa])

HSP 1 Score: 131.3 bits (329), Expect = 6.7e-27
Identity = 64/72 (88.89%), Postives = 65/72 (90.28%), Query Frame = 0 

Query: 17  RAAAQSIILKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVR 76
           R     +  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVR
Sbjct: 31  RGTCTRVYKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVR 90

Query: 77  YHIVRGTLDAVG 89
           YHIVRGTLDAVG
Sbjct: 91  YHIVRGTLDAVG 102

[Close]
BLAST of CcUC07G134850 vs. NCBI nr
Match: YP_008994481.1 (ribosomal protein S12 [Hypseocharis bilobata] >YP_008994482.1 ribosomal protein S12 [Hypseocharis bilobata] >AGV02956.1 ribosomal protein S12 [Hypseocharis bilobata] >AGV02974.1 ribosomal protein S12 [Hypseocharis bilobata])

HSP 1 Score: 131.0 bits (328), Expect = 8.7e-27
Identity = 65/74 (87.84%), Postives = 65/74 (87.84%), Query Frame = 0 

Query: 26  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 85
           KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD
Sbjct: 44  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 103

Query: 86  AVGPCVGHTSSRPY 100
           AVG    H     Y
Sbjct: 104 AVGVKDRHQGRSKY 117

[Close]
BLAST of CcUC07G134850 vs. NCBI nr
Match: QSJ48646.1 (ribosomal protein S12 [Medicago sauvagei])

HSP 1 Score: 131.0 bits (328), Expect = 8.7e-27
Identity = 65/74 (87.84%), Postives = 65/74 (87.84%), Query Frame = 0 

Query: 26  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 85
           KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD
Sbjct: 44  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 103

Query: 86  AVGPCVGHTSSRPY 100
           AVG    H     Y
Sbjct: 104 AVGVKDRHQGRSKY 117

[Close]
BLAST of CcUC07G134850 vs. NCBI nr
Match: RYQ97002.1 (hypothetical protein Ahy_B08g092963 [Arachis hypogaea])

HSP 1 Score: 131.0 bits (328), Expect = 8.7e-27
Identity = 65/75 (86.67%), Postives = 67/75 (89.33%), Query Frame = 0 

Query: 26  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 85
           KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD
Sbjct: 30  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 89

Query: 86  AVGPCVGHTSSRPYR 101
           AVG      + R Y+
Sbjct: 90  AVGVKDRQQALRSYK 104

[Close]
BLAST of CcUC07G134850 vs. ExPASy Swiss-Prot
Match: A4QJV5 (30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.0e-29
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 26  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 85
           KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD
Sbjct: 44  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 103

Query: 86  AVG 89
           AVG
Sbjct: 104 AVG 106

[Close]
BLAST of CcUC07G134850 vs. ExPASy Swiss-Prot
Match: A4QJX7 (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.0e-29
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 26  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 85
           KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD
Sbjct: 45  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 104

Query: 86  AVG 89
           AVG
Sbjct: 105 AVG 107

[Close]
BLAST of CcUC07G134850 vs. ExPASy Swiss-Prot
Match: Q3V510 (30S ribosomal protein S12, chloroplastic OS=Acorus calamus OX=4465 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.0e-29
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 26  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 85
           KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD
Sbjct: 44  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 103

Query: 86  AVG 89
           AVG
Sbjct: 104 AVG 106

[Close]
BLAST of CcUC07G134850 vs. ExPASy Swiss-Prot
Match: A4QJD9 (30S ribosomal protein S12, chloroplastic OS=Aethionema cordifolium OX=434059 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.0e-29
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 26  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 85
           KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD
Sbjct: 44  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 103

Query: 86  AVG 89
           AVG
Sbjct: 104 AVG 106

[Close]
BLAST of CcUC07G134850 vs. ExPASy Swiss-Prot
Match: A4QJM3 (30S ribosomal protein S12, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.0e-29
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 26  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 85
           KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD
Sbjct: 44  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 103

Query: 86  AVG 89
           AVG
Sbjct: 104 AVG 106

[Close]
BLAST of CcUC07G134850 vs. ExPASy TrEMBL
Match: V9P872 (30S ribosomal protein S12, chloroplastic OS=Hypseocharis bilobata OX=253189 GN=rps12 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 4.2e-27
Identity = 65/74 (87.84%), Postives = 65/74 (87.84%), Query Frame = 0 

Query: 26  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 85
           KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD
Sbjct: 44  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 103

Query: 86  AVGPCVGHTSSRPY 100
           AVG    H     Y
Sbjct: 104 AVGVKDRHQGRSKY 117

[Close]
BLAST of CcUC07G134850 vs. ExPASy TrEMBL
Match: A0A444Y4V9 (Ribosomal protein S7 OS=Arachis hypogaea OX=3818 GN=Ahy_B08g092963 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 4.2e-27
Identity = 65/75 (86.67%), Postives = 67/75 (89.33%), Query Frame = 0 

Query: 26  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 85
           KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD
Sbjct: 30  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 89

Query: 86  AVGPCVGHTSSRPYR 101
           AVG      + R Y+
Sbjct: 90  AVGVKDRQQALRSYK 104

[Close]
BLAST of CcUC07G134850 vs. ExPASy TrEMBL
Match: A0A7J6DR22 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_015737 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 5.5e-27
Identity = 68/82 (82.93%), Postives = 70/82 (85.37%), Query Frame = 0 

Query: 8  NKYSFLGGLRAAAQSII-LKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRG 67
          N+    GGL     +I   KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRG
Sbjct: 15 NESGSKGGLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRG 74

Query: 68 GRVKDLPGVRYHIVRGTLDAVG 89
          GRVKDLPGVRYHIVRGTLDAVG
Sbjct: 75 GRVKDLPGVRYHIVRGTLDAVG 96

[Close]
BLAST of CcUC07G134850 vs. ExPASy TrEMBL
Match: A0A191T555 (30S ribosomal protein S12, chloroplastic OS=Netrium digitus OX=43946 GN=rps12 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 5.5e-27
Identity = 64/74 (86.49%), Postives = 65/74 (87.84%), Query Frame = 0 

Query: 26  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 85
           KPNSALRKVARVRLTSGFE+TAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD
Sbjct: 44  KPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 103

Query: 86  AVGPCVGHTSSRPY 100
           AVG    H     Y
Sbjct: 104 AVGVKDRHQGRSKY 117

[Close]
BLAST of CcUC07G134850 vs. ExPASy TrEMBL
Match: A0A0F6Q0T5 (30S ribosomal protein S12, chloroplastic OS=Prunus subhirtella var. subhirtella OX=140660 GN=rps12 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 7.2e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 26  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 85
           KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD
Sbjct: 44  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 103

Query: 86  AVG 89
           AVG
Sbjct: 104 AVG 106

[Close]
BLAST of CcUC07G134850 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 26  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 85
           KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD
Sbjct: 44  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 103

Query: 86  AVG 89
           AVG
Sbjct: 104 AVG 106

[Close]
BLAST of CcUC07G134850 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 26  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 85
           KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD
Sbjct: 44  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 103

Query: 86  AVG 89
           AVG
Sbjct: 104 AVG 106

[Close]
BLAST of CcUC07G134850 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 26  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 85
           KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD
Sbjct: 44  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 103

Query: 86  AVG 89
           AVG
Sbjct: 104 AVG 106

[Close]
BLAST of CcUC07G134850 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 88.2 bits (217), Expect = 6.0e-18
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 26  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 85
           KPNSA RK+A+VRL++  +I A+IPG GHN QEHS VL+RGGRVKD PGV+ H +RG  D
Sbjct: 44  KPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKD 103

Query: 86  AVG 89
            +G
Sbjct: 104 LMG 106

[Close]
BLAST of CcUC07G134850 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 88.2 bits (217), Expect = 6.0e-18
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 26  KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLD 85
           KPNSA RK+A+VRL++  +I A+IPG GHN QEHS VL+RGGRVKD PGV+ H +RG  D
Sbjct: 44  KPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKD 103

Query: 86  AVG 89
            +G
Sbjct: 104 LMG 106

The following BLAST results are available for this feature:
BLAST of CcUC07G134850 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009945663.16.7e-2788.8930S ribosomal protein S12 [Flueggea virosa] >QOE56257.1 30S ribosomal protein S1... [more]
QVV41412.16.7e-2788.8930S ribosomal protein S12 [Bridelia tomentosa][more]
YP_008994481.18.7e-2787.84ribosomal protein S12 [Hypseocharis bilobata] >YP_008994482.1 ribosomal protein ... [more]
QSJ48646.18.7e-2787.84ribosomal protein S12 [Medicago sauvagei][more]
RYQ97002.18.7e-2786.67hypothetical protein Ahy_B08g092963 [Arachis hypogaea][more]
BLAST of CcUC07G134850 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A4QJV52.0e-29100.0030S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN... [more]
A4QJX72.0e-29100.0030S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN... [more]
Q3V5102.0e-29100.0030S ribosomal protein S12, chloroplastic OS=Acorus calamus OX=4465 GN=rps12-A PE... [more]
A4QJD92.0e-29100.0030S ribosomal protein S12, chloroplastic OS=Aethionema cordifolium OX=434059 GN=... [more]
A4QJM32.0e-29100.0030S ribosomal protein S12, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=... [more]
BLAST of CcUC07G134850 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
V9P8724.2e-2787.8430S ribosomal protein S12, chloroplastic OS=Hypseocharis bilobata OX=253189 GN=r... [more]
A0A444Y4V94.2e-2786.67Ribosomal protein S7 OS=Arachis hypogaea OX=3818 GN=Ahy_B08g092963 PE=3 SV=1[more]
A0A7J6DR225.5e-2782.93Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_015737 PE=3 SV=1[more]
A0A191T5555.5e-2786.4930S ribosomal protein S12, chloroplastic OS=Netrium digitus OX=43946 GN=rps12 PE... [more]
A0A0F6Q0T57.2e-27100.0030S ribosomal protein S12, chloroplastic OS=Prunus subhirtella var. subhirtella ... [more]
BLAST of CcUC07G134850 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00065.11.4e-30100.00ribosomal protein S12A [more]
ATCG01230.11.4e-30100.00ribosomal protein S12B [more]
ATCG00905.11.4e-30100.00ribosomal protein S12C [more]
AT2G07675.16.0e-1863.49Ribosomal protein S12/S23 family protein [more]
ATMG00980.16.0e-1863.49Ribosomal protein S12/S23 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006032Ribosomal protein S12/S23PRINTSPR01034RIBOSOMALS12coord: 76..92
score: 48.61
coord: 40..59
score: 75.14
coord: 59..76
score: 88.58
coord: 24..39
score: 78.99
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 26..81
e-value: 4.0E-25
score: 87.7
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 26..88
IPR005679Ribosomal protein S12, bacterial-typeTIGRFAMTIGR00981TIGR00981coord: 26..88
e-value: 6.8E-37
score: 124.1
IPR005679Ribosomal protein S12, bacterial-typeCDDcd03368Ribosomal_S12coord: 26..88
e-value: 8.85357E-49
score: 150.747
IPR001694NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit HPFAMPF00146NADHdhcoord: 1..47
e-value: 6.4E-6
score: 25.7
NoneNo IPR availableGENE3D2.40.50.140coord: 24..103
e-value: 1.1E-35
score: 124.1
NoneNo IPR availablePANTHERPTHR11652:SF5230S RIBOSOMAL PROTEIN S12-Bcoord: 26..88
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 26..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC07G134850.1CcUC07G134850.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0016020 membrane
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome