CcUC07G128860 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC07G128860
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionCST complex subunit STN1
LocationCicolChr07: 399586 .. 401715 (-)
RNA-Seq ExpressionCcUC07G128860
SyntenyCcUC07G128860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCAACGGCAACGCCTTTCCCTCTACCATACCCACATCAAGCTGCTTGGTTTCGACCTTAATTCCCTCAACCAAAATTCCTCTTCTTCTTCTTCCGATGCAGTTTCTTTCTCTCGCAATGGCTATGCCGTTTCCTGTACAGAGATCGTCGGCGTTGTGGTTTCTCATGACCTCAAACCTAACAGGTTTCTCAAATTTTCCGTCGACGATGGTACCGCTTGTGTCGGTTGCATCCTGTGGCTAAATCACCTCACATCGCCTTATTTTGCTTCCCGCCATCAGCCAGATGTTCGAATAATGGGAAATATGGCGACCCATTTCGCATCCCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGGGGGAAATTTAGCAGCTATAGGGGAGTGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAGGATGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTGGCTTTAAAGTGTTATGACCTCTCCCCTGCACCCACTTAGCTGTAGATTCCAATGTTTTAAAATGCTATCTCTAGCCTTGTGATTTTCCCTTTCTTTTTTCTTTCTGAATGCAGAAAAGATTCCGCTTTTTGTTGTTTTCTTTTTCCTTCTTAAAGTTTAAGTTTACTGTACAAAATTTTCCACAACAGCTTGGCCTTTGAAATGATAATATAATAATATTGAAACTACGTTGCTACTACTGCCTGAGTTTCCTGTTTAGTTTGATGAAAATTGCCAATGCTCAATGAGGAATTATTGACATTTTTTCCCATCGGATATGATCAAAGGGATGGCGGGATTGTGAGTACTAAGTAGTAACATTTTTATTTATAAATCAAACCATTTAAAGCTGCAAATATTAATAAATATATGTATATATCAACCCATACCATAGCTGCGACAAATTTTACCCACCCATTACATCAAGTATCAGTGTAGATATTTGTTTATAGAACATGATTGGTAGATGTATGGGCCTTTACCTAAAGTTATAGGTTTGTTTTTTTTTAGCTTTTTCTTTGGAGGGGGGGACTGAAAGATCATTTTGAGAGAATGATATGGGTATTGGGGATTTTCTAGTTCCAACTTCCAAGCAGGATGGGCACAGGATGAACAATGGAAAGTCAGAATTAGAAACAAAAGAATGGCTTTATGACACTGATGAAAGGTAAATTCAAACTGCAAAGTTGAATCCTCTGGTGACTGCATACCCCAAAATCACTCCACTTTTGACCTCAGTCAATTCAAAATTATACTTCACTGAGATTTCTCTGTGATGTAGTCCTTTATGTTTCTAATTTGTTAGGTTTTAATAATTAAGTTGGTTTGTTGTTAGTTGAGTTATGTAATTAGGTTTAGGTAGTTTTAAAGATATTTTTACCATGTTTTTAAGTTTGTTGACCTGATCAGCAGGTTGTAGGTTCCCTCTTCCAGCTCTTTAAGAGGCTGCTAGCTTTGTATAAATTCACAATTTTGATAAGAAATAAAGTTTCCTCTCTTGGTATACAACAATATGCTTGGCTTGCTTTGATGCTCTCTCATTCCTAAGCTGTTCATTCAACTAATTCTCTGAACAAAGAGCATTTTCTTATTGTTGTTGTGAAATATTTTTGTTCGATATGTTGTGGCCAGGCCATGAAGCACAAAATAGTGGAAGTTTCCATATATGCAACTGCTATATCTACTTTGTCTTTTTCCTCTTTTTGAACTGATTCCTCTCTGCTTTTAGAATAGGGATGTCAAATGAATTCAGCCACCCTCAAAACTTGATCAGTTTTACTCAAACTATTTTGGTTTGGTTGATTCAAGTTCGAATGAGTTGAATTCATATGGATGAACTTATTGATAGACAATGATGGGATAATTGATTTAGATTTATGTTAGTATCAACTGAGCTTAGATATATAATTCTATTATCTGGTGAAGCAAATTGATTCCAAATTGTTGTCATAATTTTGTGGCCTAGAATATAAAACAGTTGCAATATCTTTGCTTTGAATTTAAATGGCCTTCAGGTTAAGGCTAGCTCAGGTGGCTATAGAATACAGAGGTCGAGGTGGCTCTAACCTTCTTGATGGCTACGATGAAAAACAAAGTAGCCGGTGGACAAATTTCTCATGA

mRNA sequence

ATGAACCAACGGCAACGCCTTTCCCTCTACCATACCCACATCAAGCTGCTTGGTTTCGACCTTAATTCCCTCAACCAAAATTCCTCTTCTTCTTCTTCCGATGCAGTTTCTTTCTCTCGCAATGGCTATGCCGTTTCCTGTACAGAGATCGTCGGCGTTGTGGTTTCTCATGACCTCAAACCTAACAGGTTTCTCAAATTTTCCGTCGACGATGGTACCGCTTGTGTCGGTTGCATCCTGTGGCTAAATCACCTCACATCGCCTTATTTTGCTTCCCGCCATCAGCCAGATGTTCGAATAATGGGAAATATGGCGACCCATTTCGCATCCCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGGGGGAAATTTAGCAGCTATAGGGGAGTGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAGGATGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTAAGGCTAGCTCAGGTGGCTATAGAATACAGAGGTCGAGGTGGCTCTAACCTTCTTGATGGCTACGATGAAAAACAAAGTAGCCGGTGGACAAATTTCTCATGA

Coding sequence (CDS)

ATGAACCAACGGCAACGCCTTTCCCTCTACCATACCCACATCAAGCTGCTTGGTTTCGACCTTAATTCCCTCAACCAAAATTCCTCTTCTTCTTCTTCCGATGCAGTTTCTTTCTCTCGCAATGGCTATGCCGTTTCCTGTACAGAGATCGTCGGCGTTGTGGTTTCTCATGACCTCAAACCTAACAGGTTTCTCAAATTTTCCGTCGACGATGGTACCGCTTGTGTCGGTTGCATCCTGTGGCTAAATCACCTCACATCGCCTTATTTTGCTTCCCGCCATCAGCCAGATGTTCGAATAATGGGAAATATGGCGACCCATTTCGCATCCCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGGGGGAAATTTAGCAGCTATAGGGGAGTGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAGGATGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTAAGGCTAGCTCAGGTGGCTATAGAATACAGAGGTCGAGGTGGCTCTAACCTTCTTGATGGCTACGATGAAAAACAAAGTAGCCGGTGGACAAATTTCTCATGA

Protein sequence

MNQRQRLSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSHDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNMATHFASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLRLAQVAIEYRGRGGSNLLDGYDEKQSSRWTNFS
Homology
[Close]
BLAST of CcUC07G128860 vs. NCBI nr
Match: XP_038887265.1 (CST complex subunit STN1 isoform X1 [Benincasa hispida])

HSP 1 Score: 307.8 bits (787), Expect = 6.7e-80
Identity = 153/163 (93.87%), Postives = 159/163 (97.55%), Query Frame = 0 

Query: 1   MNQRQRLSLYHTHIKLLGFDLNSLNQ-NSSSSSSDAVSFSRNGYAVSCTEIVGVVVSHDL 60
           MNQRQRLSLYHTHIKLLGFD+NSLNQ +SSSSSSDAVSFSRNGYAVSC+EIVGVVVSHDL
Sbjct: 19  MNQRQRLSLYHTHIKLLGFDINSLNQKSSSSSSSDAVSFSRNGYAVSCSEIVGVVVSHDL 78

Query: 61  KPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNMATHFASQIRVGIVVR 120
           KPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGN+ATHFA+QIRVGIV R
Sbjct: 79  KPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNVATHFAAQIRVGIVAR 138

Query: 121 VRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLRLAQV 163
           VRGK SSYRGVVQITVSDVVVE+DPNAEILHWLDSMR RLAQV
Sbjct: 139 VRGKLSSYRGVVQITVSDVVVEEDPNAEILHWLDSMRFRLAQV 181

[Close]
BLAST of CcUC07G128860 vs. NCBI nr
Match: XP_038887266.1 (CST complex subunit STN1 isoform X2 [Benincasa hispida])

HSP 1 Score: 297.0 bits (759), Expect = 1.2e-76
Identity = 147/156 (94.23%), Postives = 153/156 (98.08%), Query Frame = 0 

Query: 1   MNQRQRLSLYHTHIKLLGFDLNSLNQ-NSSSSSSDAVSFSRNGYAVSCTEIVGVVVSHDL 60
           MNQRQRLSLYHTHIKLLGFD+NSLNQ +SSSSSSDAVSFSRNGYAVSC+EIVGVVVSHDL
Sbjct: 19  MNQRQRLSLYHTHIKLLGFDINSLNQKSSSSSSSDAVSFSRNGYAVSCSEIVGVVVSHDL 78

Query: 61  KPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNMATHFASQIRVGIVVR 120
           KPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGN+ATHFA+QIRVGIV R
Sbjct: 79  KPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNVATHFAAQIRVGIVAR 138

Query: 121 VRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSM 156
           VRGK SSYRGVVQITVSDVVVE+DPNAEILHWLDSM
Sbjct: 139 VRGKLSSYRGVVQITVSDVVVEEDPNAEILHWLDSM 174

[Close]
BLAST of CcUC07G128860 vs. NCBI nr
Match: XP_023553655.1 (CST complex subunit STN1 [Cucurbita pepo subsp. pepo] >XP_023553656.1 CST complex subunit STN1 [Cucurbita pepo subsp. pepo] >XP_023553657.1 CST complex subunit STN1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 280.8 bits (717), Expect = 8.8e-72
Identity = 138/159 (86.79%), Postives = 146/159 (91.82%), Query Frame = 0 

Query: 1   MNQRQRLSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSHDLK 60
           MNQ++  SLYHTHIKLLGFDLNSL Q+SSSSSSDAVSFSR GYAVSC E+VGVVV  DLK
Sbjct: 1   MNQQRAFSLYHTHIKLLGFDLNSLAQSSSSSSSDAVSFSRRGYAVSCVEVVGVVVFRDLK 60

Query: 61  PNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNMATHFASQIRVGIVVRV 120
           PNRFL+FSVDDGT CV CILWLNHLTSPYFASRHQPDVRI+GNMATHFA+QIRVGIV RV
Sbjct: 61  PNRFLRFSVDDGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQIRVGIVARV 120

Query: 121 RGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLRL 160
           RGK SSYRGVVQITVSDVVVE+DPNAEILHWLD MRL L
Sbjct: 121 RGKVSSYRGVVQITVSDVVVENDPNAEILHWLDCMRLAL 159

[Close]
BLAST of CcUC07G128860 vs. NCBI nr
Match: XP_022963452.1 (LOW QUALITY PROTEIN: CST complex subunit STN1 [Cucurbita moschata])

HSP 1 Score: 278.5 bits (711), Expect = 4.3e-71
Identity = 136/159 (85.53%), Postives = 146/159 (91.82%), Query Frame = 0 

Query: 1   MNQRQRLSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSHDLK 60
           MNQ++  SLYHTHIKLLGFDLNSL Q++SSSSSDAVSFSR GYAVSC EIVGVVV  DLK
Sbjct: 41  MNQQRAFSLYHTHIKLLGFDLNSLTQSASSSSSDAVSFSRRGYAVSCVEIVGVVVFRDLK 100

Query: 61  PNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNMATHFASQIRVGIVVRV 120
           PNRFL+FSVDDGT CV CILWLNHLTSPYFASRHQPDVRI+GNMATHFA+QIRVGIV RV
Sbjct: 101 PNRFLRFSVDDGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQIRVGIVARV 160

Query: 121 RGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLRL 160
           RG+ SSYRGVVQ+TVSDVVVE+DPNAEILHWLD MRL L
Sbjct: 161 RGRVSSYRGVVQMTVSDVVVENDPNAEILHWLDCMRLAL 199

[Close]
BLAST of CcUC07G128860 vs. NCBI nr
Match: XP_022967373.1 (CST complex subunit STN1 [Cucurbita maxima] >XP_022967374.1 CST complex subunit STN1 [Cucurbita maxima] >XP_022967375.1 CST complex subunit STN1 [Cucurbita maxima])

HSP 1 Score: 278.1 bits (710), Expect = 5.7e-71
Identity = 136/155 (87.74%), Postives = 144/155 (92.90%), Query Frame = 0 

Query: 1   MNQRQRLSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSHDLK 60
           MNQ++  SLYHTHIKLLGFDLNSL Q+SSSSSSDAVSFSR G+AVSC EIVGVVVS DLK
Sbjct: 19  MNQQRAFSLYHTHIKLLGFDLNSLTQSSSSSSSDAVSFSRRGFAVSCAEIVGVVVSRDLK 78

Query: 61  PNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNMATHFASQIRVGIVVRV 120
           PNRFL+FSVDDGT CV CILWLNHLTSPYFASRHQPDVRI+GNMATHFA+QIRVGIV RV
Sbjct: 79  PNRFLRFSVDDGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQIRVGIVARV 138

Query: 121 RGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSM 156
           RGK SSYRGVVQITVSDVVVE+DPNAEILHWLD M
Sbjct: 139 RGKVSSYRGVVQITVSDVVVENDPNAEILHWLDCM 173

[Close]
BLAST of CcUC07G128860 vs. ExPASy Swiss-Prot
Match: Q9LMK5 (CST complex subunit STN1 OS=Arabidopsis thaliana OX=3702 GN=STN1 PE=1 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.2e-33
Identity = 75/150 (50.00%), Postives = 99/150 (66.00%), Query Frame = 0 

Query: 8   SLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSHDLKPNRFLKF 67
           SL  TH KL+  D+  L Q+ + S+S ++     G  VS  EIVG +VS DL P +FLKF
Sbjct: 4   SLQSTHAKLVARDIQRLTQSPTESNSFSL---LGGACVSRVEIVGTIVSRDLTP-KFLKF 63

Query: 68  SVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNMATHFASQIRVGIVVRVRGKFSSY 127
            VDDGT CV C++WLN LTS YF+      + ++ + A   A+QIR+G V RVRG+  SY
Sbjct: 64  GVDDGTGCVTCVMWLNQLTSSYFSRWDPATILLLASAARKQAAQIRIGAVARVRGRVGSY 123

Query: 128 RGVVQITVSDVVVEDDPNAEILHWLDSMRL 158
           RGV+QIT +  V E DPNAEILHWL+ ++L
Sbjct: 124 RGVMQITANVAVAERDPNAEILHWLECLKL 149

[Close]
BLAST of CcUC07G128860 vs. ExPASy TrEMBL
Match: A0A6J1HFA9 (LOW QUALITY PROTEIN: CST complex subunit STN1 OS=Cucurbita moschata OX=3662 GN=LOC111463780 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 2.1e-71
Identity = 136/159 (85.53%), Postives = 146/159 (91.82%), Query Frame = 0 

Query: 1   MNQRQRLSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSHDLK 60
           MNQ++  SLYHTHIKLLGFDLNSL Q++SSSSSDAVSFSR GYAVSC EIVGVVV  DLK
Sbjct: 41  MNQQRAFSLYHTHIKLLGFDLNSLTQSASSSSSDAVSFSRRGYAVSCVEIVGVVVFRDLK 100

Query: 61  PNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNMATHFASQIRVGIVVRV 120
           PNRFL+FSVDDGT CV CILWLNHLTSPYFASRHQPDVRI+GNMATHFA+QIRVGIV RV
Sbjct: 101 PNRFLRFSVDDGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQIRVGIVARV 160

Query: 121 RGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLRL 160
           RG+ SSYRGVVQ+TVSDVVVE+DPNAEILHWLD MRL L
Sbjct: 161 RGRVSSYRGVVQMTVSDVVVENDPNAEILHWLDCMRLAL 199

[Close]
BLAST of CcUC07G128860 vs. ExPASy TrEMBL
Match: A0A6J1HUX0 (CST complex subunit STN1 OS=Cucurbita maxima OX=3661 GN=LOC111466921 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.7e-71
Identity = 136/155 (87.74%), Postives = 144/155 (92.90%), Query Frame = 0 

Query: 1   MNQRQRLSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSHDLK 60
           MNQ++  SLYHTHIKLLGFDLNSL Q+SSSSSSDAVSFSR G+AVSC EIVGVVVS DLK
Sbjct: 19  MNQQRAFSLYHTHIKLLGFDLNSLTQSSSSSSSDAVSFSRRGFAVSCAEIVGVVVSRDLK 78

Query: 61  PNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNMATHFASQIRVGIVVRV 120
           PNRFL+FSVDDGT CV CILWLNHLTSPYFASRHQPDVRI+GNMATHFA+QIRVGIV RV
Sbjct: 79  PNRFLRFSVDDGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQIRVGIVARV 138

Query: 121 RGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSM 156
           RGK SSYRGVVQITVSDVVVE+DPNAEILHWLD M
Sbjct: 139 RGKVSSYRGVVQITVSDVVVENDPNAEILHWLDCM 173

[Close]
BLAST of CcUC07G128860 vs. ExPASy TrEMBL
Match: A0A5D3E3H2 (CST complex subunit STN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001150 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 4.0e-70
Identity = 139/161 (86.34%), Postives = 146/161 (90.68%), Query Frame = 0 

Query: 1   MNQRQR--LSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSHD 60
           MNQRQR   SLY TH+KLLGFDLNSLNQN   SSSD+VSFSR GYAVSCTEIVGVVV  D
Sbjct: 1   MNQRQRFSFSLYQTHVKLLGFDLNSLNQN---SSSDSVSFSRKGYAVSCTEIVGVVVFRD 60

Query: 61  LKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNMATHFASQIRVGIVV 120
           LKPNRFLKFSVDDGTACVGCILWLNHLTS YFASRH PDVRI+ +MATHFA+QIRVGIVV
Sbjct: 61  LKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVV 120

Query: 121 RVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLRL 160
           RVRGK SSYRG+VQITVSDVVVEDDPNAEILHWLDSMRL +
Sbjct: 121 RVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAM 158

[Close]
BLAST of CcUC07G128860 vs. ExPASy TrEMBL
Match: A0A1S3BLT5 (CST complex subunit STN1 OS=Cucumis melo OX=3656 GN=LOC103491245 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 4.0e-70
Identity = 139/161 (86.34%), Postives = 146/161 (90.68%), Query Frame = 0 

Query: 1   MNQRQR--LSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSHD 60
           MNQRQR   SLY TH+KLLGFDLNSLNQN   SSSD+VSFSR GYAVSCTEIVGVVV  D
Sbjct: 51  MNQRQRFSFSLYQTHVKLLGFDLNSLNQN---SSSDSVSFSRKGYAVSCTEIVGVVVFRD 110

Query: 61  LKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNMATHFASQIRVGIVV 120
           LKPNRFLKFSVDDGTACVGCILWLNHLTS YFASRH PDVRI+ +MATHFA+QIRVGIVV
Sbjct: 111 LKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVV 170

Query: 121 RVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLRL 160
           RVRGK SSYRG+VQITVSDVVVEDDPNAEILHWLDSMRL +
Sbjct: 171 RVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAM 208

[Close]
BLAST of CcUC07G128860 vs. ExPASy TrEMBL
Match: A0A0A0LNV0 (OB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G223720 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.7e-68
Identity = 136/161 (84.47%), Postives = 145/161 (90.06%), Query Frame = 0 

Query: 1   MNQRQR--LSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSHD 60
           MNQR+R   SLY TH+KLL FDLNSLNQ   +SSSD+VSFSR GYAVSCTEIVGVVV  D
Sbjct: 1   MNQRRRFSFSLYQTHVKLLAFDLNSLNQ---TSSSDSVSFSRKGYAVSCTEIVGVVVFRD 60

Query: 61  LKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNMATHFASQIRVGIVV 120
           LKPNRFLKFSVDDGTACVGCILWLNHLTS YFASRH  DVRI+G+MATHFA+QIRVGIVV
Sbjct: 61  LKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVV 120

Query: 121 RVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLRL 160
           RVRGK SSYRG+VQITVSDVVVEDDPNAEILHWLDSMRL +
Sbjct: 121 RVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAM 158

[Close]
BLAST of CcUC07G128860 vs. TAIR 10
Match: AT1G07130.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 143.7 bits (361), Expect = 1.6e-34
Identity = 75/150 (50.00%), Postives = 99/150 (66.00%), Query Frame = 0 

Query: 8   SLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSHDLKPNRFLKF 67
           SL  TH KL+  D+  L Q+ + S+S ++     G  VS  EIVG +VS DL P +FLKF
Sbjct: 4   SLQSTHAKLVARDIQRLTQSPTESNSFSL---LGGACVSRVEIVGTIVSRDLTP-KFLKF 63

Query: 68  SVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNMATHFASQIRVGIVVRVRGKFSSY 127
            VDDGT CV C++WLN LTS YF+      + ++ + A   A+QIR+G V RVRG+  SY
Sbjct: 64  GVDDGTGCVTCVMWLNQLTSSYFSRWDPATILLLASAARKQAAQIRIGAVARVRGRVGSY 123

Query: 128 RGVVQITVSDVVVEDDPNAEILHWLDSMRL 158
           RGV+QIT +  V E DPNAEILHWL+ ++L
Sbjct: 124 RGVMQITANVAVAERDPNAEILHWLECLKL 149

[Close]
BLAST of CcUC07G128860 vs. TAIR 10
Match: AT2G24490.1 (replicon protein A2 )

HSP 1 Score: 41.6 bits (96), Expect = 8.3e-04
Identity = 30/123 (24.39%), Postives = 52/123 (42.28%), Query Frame = 0 

Query: 31  SSSDAVSFSRNGYAVSCTEIVGVVVSHDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYF 90
           SS +      NG +++   +VG+V   D      ++F++DDGT  + C  W++       
Sbjct: 56  SSGEKSGLVINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWVSETF---- 115

Query: 91  ASRHQPDVRIMGNMATHFASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILH 150
                 D R M          +R G  VR+ G   +++G  Q+ V  V    D N    H
Sbjct: 116 ------DAREM--------ESVRDGTYVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFH 160

Query: 151 WLD 154
           +++
Sbjct: 176 YIE 160

[Close]
BLAST of CcUC07G128860 vs. TAIR 10
Match: AT2G24490.2 (replicon protein A2 )

HSP 1 Score: 41.6 bits (96), Expect = 8.3e-04
Identity = 30/123 (24.39%), Postives = 52/123 (42.28%), Query Frame = 0 

Query: 31  SSSDAVSFSRNGYAVSCTEIVGVVVSHDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYF 90
           SS +      NG +++   +VG+V   D      ++F++DDGT  + C  W++       
Sbjct: 56  SSGEKSGLVINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWVSETF---- 115

Query: 91  ASRHQPDVRIMGNMATHFASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILH 150
                 D R M          +R G  VR+ G   +++G  Q+ V  V    D N    H
Sbjct: 116 ------DAREM--------ESVRDGTYVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFH 160

Query: 151 WLD 154
           +++
Sbjct: 176 YIE 160

The following BLAST results are available for this feature:
BLAST of CcUC07G128860 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038887265.16.7e-8093.87CST complex subunit STN1 isoform X1 [Benincasa hispida][more]
XP_038887266.11.2e-7694.23CST complex subunit STN1 isoform X2 [Benincasa hispida][more]
XP_023553655.18.8e-7286.79CST complex subunit STN1 [Cucurbita pepo subsp. pepo] >XP_023553656.1 CST comple... [more]
XP_022963452.14.3e-7185.53LOW QUALITY PROTEIN: CST complex subunit STN1 [Cucurbita moschata][more]
XP_022967373.15.7e-7187.74CST complex subunit STN1 [Cucurbita maxima] >XP_022967374.1 CST complex subunit ... [more]
BLAST of CcUC07G128860 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LMK52.2e-3350.00CST complex subunit STN1 OS=Arabidopsis thaliana OX=3702 GN=STN1 PE=1 SV=1[more]
BLAST of CcUC07G128860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HFA92.1e-7185.53LOW QUALITY PROTEIN: CST complex subunit STN1 OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1HUX02.7e-7187.74CST complex subunit STN1 OS=Cucurbita maxima OX=3661 GN=LOC111466921 PE=4 SV=1[more]
A0A5D3E3H24.0e-7086.34CST complex subunit STN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A1S3BLT54.0e-7086.34CST complex subunit STN1 OS=Cucumis melo OX=3656 GN=LOC103491245 PE=4 SV=1[more]
A0A0A0LNV03.7e-6884.47OB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G223720 PE=4 SV=... [more]
BLAST of CcUC07G128860 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G07130.11.6e-3450.00Nucleic acid-binding, OB-fold-like protein [more]
AT2G24490.18.3e-0424.39replicon protein A2 [more]
AT2G24490.28.3e-0424.39replicon protein A2 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004365OB-fold nucleic acid binding domain, AA-tRNA synthetase-typePFAMPF01336tRNA_anti-codoncoord: 50..139
e-value: 1.7E-7
score: 31.1
NoneNo IPR availableGENE3D2.40.50.140coord: 5..165
e-value: 3.2E-25
score: 90.3
NoneNo IPR availablePANTHERPTHR13989:SF33CST COMPLEX SUBUNIT STN1coord: 8..160
IPR040260Replication factor A protein-likePANTHERPTHR13989REPLICATION PROTEIN A-RELATEDcoord: 8..160
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 38..158

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC07G128860.1CcUC07G128860.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
biological_process GO:0008033 tRNA processing
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0106310 protein serine kinase activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0004712 protein serine/threonine/tyrosine kinase activity
molecular_function GO:0003697 single-stranded DNA binding
molecular_function GO:0003676 nucleic acid binding