CcUC06G123860 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC06G123860
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionClavata3/ESR (CLE) gene family member
LocationCicolChr06: 26305897 .. 26306196 (+)
RNA-Seq ExpressionCcUC06G123860
SyntenyCcUC06G123860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGTGCAATGGGACTAGCTAAGTCTAGCATTTTGGTGCTTTGGCTTTCGGTTTTAGTCGTTTGCGTTAGCTCCGTCGTGGGAGCTCGGAAGATGTTGTTTTTGGCTCACGACAGTAAAAACAGCTTGACAACTACACGGGAGACAATCAACAACAGGTGCAAGTACTTGAAGAACATCCATTGTTGTGAGTGCTTCTTCTTGAGCTCTAAGAAGATGATGATCAATAATAATGTCACCAATTTTGAGGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATAAGTAG

mRNA sequence

ATGAGTGGTGCAATGGGACTAGCTAAGTCTAGCATTTTGGTGCTTTGGCTTTCGGTTTTAGTCGTTTGCGTTAGCTCCGTCGTGGGAGCTCGGAAGATGTTGTTTTTGGCTCACGACAGTAAAAACAGCTTGACAACTACACGGGAGACAATCAACAACAGGTGCAAGTACTTGAAGAACATCCATTGTTGTGAGTGCTTCTTCTTGAGCTCTAAGAAGATGATGATCAATAATAATGTCACCAATTTTGAGGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATAAGTAG

Coding sequence (CDS)

ATGAGTGGTGCAATGGGACTAGCTAAGTCTAGCATTTTGGTGCTTTGGCTTTCGGTTTTAGTCGTTTGCGTTAGCTCCGTCGTGGGAGCTCGGAAGATGTTGTTTTTGGCTCACGACAGTAAAAACAGCTTGACAACTACACGGGAGACAATCAACAACAGGTGCAAGTACTTGAAGAACATCCATTGTTGTGAGTGCTTCTTCTTGAGCTCTAAGAAGATGATGATCAATAATAATGTCACCAATTTTGAGGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATAAGTAG

Protein sequence

MSGAMGLAKSSILVLWLSVLVVCVSSVVGARKMLFLAHDSKNSLTTTRETINNRCKYLKNIHCCECFFLSSKKMMINNNVTNFEEKRVVPTGPNPLHNK
Homology
BLAST of CcUC06G123860 vs. NCBI nr
Match: KAA0058189.1 (Clavata3/ESR (CLE) protein [Cucumis melo var. makuwa] >TYK28553.1 Clavata3/ESR (CLE) gene family member [Cucumis melo var. makuwa])

HSP 1 Score: 147.5 bits (371), Expect = 6.0e-32
Identity = 83/110 (75.45%), Postives = 89/110 (80.91%), Query Frame = 0

Query: 1   MSGAMGLAKSSILVLWLSVLVVCVSSVVGARKMLFLAH----DSKNSLTTT-RETINNRC 60
           MSGAMGL+KSSILV WLSVLVVCV+SV GARK LFL H    D+KNSLTTT  ET  NRC
Sbjct: 1   MSGAMGLSKSSILVFWLSVLVVCVTSVAGARKPLFLGHNGVRDNKNSLTTTPGETTINRC 60

Query: 61  KYLKN----IHCCECFFLSSKKMMI---NNNVTNFEEKRVVPTGPNPLHN 99
           KY KN    +HCCECFFLSSKKMM+   NNN TNFE+KRVVPTGPNPLHN
Sbjct: 61  KYSKNNANDLHCCECFFLSSKKMMMMINNNNGTNFEDKRVVPTGPNPLHN 110

BLAST of CcUC06G123860 vs. NCBI nr
Match: KGN65507.1 (hypothetical protein Csa_019832 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 6.0e-32
Identity = 83/110 (75.45%), Postives = 89/110 (80.91%), Query Frame = 0

Query: 1   MSGAMGLAKSSILVLWLSVLVVCVSSVVGARKMLFLAH----DSKNSLTTT-RETINNRC 60
           MSGAMGL+KSSIL+ WLSVLVVCV+SV GARK LFL H    D+KNSLTTT  ET  NRC
Sbjct: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60

Query: 61  KYLKN-----IHCCECFFLSSKKMMI--NNNVTNFEEKRVVPTGPNPLHN 99
           KY KN     +HCCECFFLSSKKMM+  NNN TNFEEKRVVPTGPNPLHN
Sbjct: 61  KYSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN 110

BLAST of CcUC06G123860 vs. NCBI nr
Match: KAG6587715.1 (hypothetical protein SDJN03_16280, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.5 bits (262), Expect = 2.6e-19
Identity = 66/98 (67.35%), Postives = 75/98 (76.53%), Query Frame = 0

Query: 5   MGLAKSSILVLWLSVLVVCVSSVVGARKMLFLAHDS---KNSLTTTRETINNRCKYLKNI 64
           M LA+SSILVL LSV  VC+ SVVGARKMLFLA DS    NSLT   E+ + RCK  K +
Sbjct: 1   MRLAQSSILVLSLSVF-VCIGSVVGARKMLFLAQDSTRDNNSLTIAMES-SRRCK-SKKL 60

Query: 65  HCCECFFLSSKKMMINNNVTNFEEKRVVPTGPNPLHNK 100
           +CCECFF SS+K MINN  ++ EEKRVVPTGPNPLHNK
Sbjct: 61  YCCECFFSSSEK-MINNATSSSEEKRVVPTGPNPLHNK 94

BLAST of CcUC06G123860 vs. NCBI nr
Match: XP_023003872.1 (putative receptor-like protein kinase At4g00960 [Cucurbita maxima])

HSP 1 Score: 71.6 bits (174), Expect = 4.2e-09
Identity = 49/83 (59.04%), Postives = 58/83 (69.88%), Query Frame = 0

Query: 9   KSSILVLWLSVLVVCVSSVVGARKMLFLAHDS---KNSLTTTRETINNRCKYLKNIHCCE 68
           +SSILVL LSV  VC+ SVVGARKMLFLA DS    NSLT   E  + RCK  K ++CC 
Sbjct: 113 RSSILVLSLSVF-VCIGSVVGARKMLFLAQDSTRDNNSLTIAMEN-SRRCK-SKKLYCCG 172

Query: 69  CFFLSSKKMMINNNVTNFEEKRV 89
           CFF SS+K  INN  ++ EEKR+
Sbjct: 173 CFFSSSEK-TINNATSSSEEKRL 191

BLAST of CcUC06G123860 vs. ExPASy TrEMBL
Match: A0A5A7UXE2 (Clavata3/ESR (CLE) gene family member OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G002000 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.9e-32
Identity = 83/110 (75.45%), Postives = 89/110 (80.91%), Query Frame = 0

Query: 1   MSGAMGLAKSSILVLWLSVLVVCVSSVVGARKMLFLAH----DSKNSLTTT-RETINNRC 60
           MSGAMGL+KSSILV WLSVLVVCV+SV GARK LFL H    D+KNSLTTT  ET  NRC
Sbjct: 1   MSGAMGLSKSSILVFWLSVLVVCVTSVAGARKPLFLGHNGVRDNKNSLTTTPGETTINRC 60

Query: 61  KYLKN----IHCCECFFLSSKKMMI---NNNVTNFEEKRVVPTGPNPLHN 99
           KY KN    +HCCECFFLSSKKMM+   NNN TNFE+KRVVPTGPNPLHN
Sbjct: 61  KYSKNNANDLHCCECFFLSSKKMMMMINNNNGTNFEDKRVVPTGPNPLHN 110

BLAST of CcUC06G123860 vs. ExPASy TrEMBL
Match: A0A0A0LXI1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G433060 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.9e-32
Identity = 83/110 (75.45%), Postives = 89/110 (80.91%), Query Frame = 0

Query: 1   MSGAMGLAKSSILVLWLSVLVVCVSSVVGARKMLFLAH----DSKNSLTTT-RETINNRC 60
           MSGAMGL+KSSIL+ WLSVLVVCV+SV GARK LFL H    D+KNSLTTT  ET  NRC
Sbjct: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60

Query: 61  KYLKN-----IHCCECFFLSSKKMMI--NNNVTNFEEKRVVPTGPNPLHN 99
           KY KN     +HCCECFFLSSKKMM+  NNN TNFEEKRVVPTGPNPLHN
Sbjct: 61  KYSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN 110

BLAST of CcUC06G123860 vs. ExPASy TrEMBL
Match: A0A6J1KNU3 (putative receptor-like protein kinase At4g00960 OS=Cucurbita maxima OX=3661 GN=LOC111497330 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.0e-09
Identity = 49/83 (59.04%), Postives = 58/83 (69.88%), Query Frame = 0

Query: 9   KSSILVLWLSVLVVCVSSVVGARKMLFLAHDS---KNSLTTTRETINNRCKYLKNIHCCE 68
           +SSILVL LSV  VC+ SVVGARKMLFLA DS    NSLT   E  + RCK  K ++CC 
Sbjct: 113 RSSILVLSLSVF-VCIGSVVGARKMLFLAQDSTRDNNSLTIAMEN-SRRCK-SKKLYCCG 172

Query: 69  CFFLSSKKMMINNNVTNFEEKRV 89
           CFF SS+K  INN  ++ EEKR+
Sbjct: 173 CFFSSSEK-TINNATSSSEEKRL 191

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0058189.16.0e-3275.45Clavata3/ESR (CLE) protein [Cucumis melo var. makuwa] >TYK28553.1 Clavata3/ESR (... [more]
KGN65507.16.0e-3275.45hypothetical protein Csa_019832 [Cucumis sativus][more]
KAG6587715.12.6e-1967.35hypothetical protein SDJN03_16280, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023003872.14.2e-0959.04putative receptor-like protein kinase At4g00960 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UXE22.9e-3275.45Clavata3/ESR (CLE) gene family member OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A0A0LXI12.9e-3275.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G433060 PE=4 SV=1[more]
A0A6J1KNU32.0e-0959.04putative receptor-like protein kinase At4g00960 OS=Cucurbita maxima OX=3661 GN=L... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC06G123860.1CcUC06G123860.1mRNA