CcUC06G123740 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G123740
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Cyclin-dependent protein kinase inhibitor SMR6-like protein
Location	CicolChr06: 26168841 .. 26169149 (-)
RNA-Seq Expression	CcUC06G123740
Synteny	CcUC06G123740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATGGAAATTTTGGAGGAATTCCAACCACTTACACCATTATCTTCTTCCCTTCAATTCATCATTCCCAAAGATAAAACACAAGAAGAAGAAGAATGTCTCACCCCCACCGCCGCCGCCGCCCGCTTGAAGCCCGCCGTGGTCTGTCCGCCGGCGCCCAAGAAACCTCGTCCTCCACGAAGGAAACTGAACTTTCTGCCACCTCCTTTCTTTGAAGCTCCACAAGATCTCAATTCTCTCTATTTTCAACTTCATATTCCTTCCAAGAAAATCAAACCCATTTCTACTTCATCTTTCTATCACTAA

mRNA sequence

ATGGGTATGGAAATTTTGGAGGAATTCCAACCACTTACACCATTATCTTCTTCCCTTCAATTCATCATTCCCAAAGATAAAACACAAGAAGAAGAAGAATGTCTCACCCCCACCGCCGCCGCCGCCCGCTTGAAGCCCGCCGTGGTCTGTCCGCCGGCGCCCAAGAAACCTCGTCCTCCACGAAGGAAACTGAACTTTCTGCCACCTCCTTTCTTTGAAGCTCCACAAGATCTCAATTCTCTCTATTTTCAACTTCATATTCCTTCCAAGAAAATCAAACCCATTTCTACTTCATCTTTCTATCACTAA

Coding sequence (CDS)

ATGGGTATGGAAATTTTGGAGGAATTCCAACCACTTACACCATTATCTTCTTCCCTTCAATTCATCATTCCCAAAGATAAAACACAAGAAGAAGAAGAATGTCTCACCCCCACCGCCGCCGCCGCCCGCTTGAAGCCCGCCGTGGTCTGTCCGCCGGCGCCCAAGAAACCTCGTCCTCCACGAAGGAAACTGAACTTTCTGCCACCTCCTTTCTTTGAAGCTCCACAAGATCTCAATTCTCTCTATTTTCAACTTCATATTCCTTCCAAGAAAATCAAACCCATTTCTACTTCATCTTTCTATCACTAA

Protein sequence

MGMEILEEFQPLTPLSSSLQFIIPKDKTQEEEECLTPTAAAARLKPAVVCPPAPKKPRPPRRKLNFLPPPFFEAPQDLNSLYFQLHIPSKKIKPISTSSFYH

Homology

[Close]

BLAST of CcUC06G123740 vs. NCBI nr
Match: KGN65496.1 (hypothetical protein Csa_019987 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 1.3e-37
Identity = 85/101 (84.16%), Postives = 91/101 (90.10%), Query Frame = 0


Query: 1   MGMEILEEFQPLTPLSSSLQFIIPKDKTQ------EEEECLTPTAAAARLKPAVVCPPAP 60
           MGMEIL+EF PLTPL SSLQFIIPK KT+      +EEECLTPTAAAARLKPA++CPPAP
Sbjct: 1   MGMEILDEFSPLTPL-SSLQFIIPKHKTEQQQQEDQEEECLTPTAAAARLKPAIICPPAP 60

Query: 61  KKPRPPRRKLNFLPPPFFEAPQDLNSLYFQLHIPSKKIKPI 96
           KKPRPPRRKLNFLPPPFFEAPQDLNS+YFQ HIPSKKIKPI
Sbjct: 61  KKPRPPRRKLNFLPPPFFEAPQDLNSVYFQFHIPSKKIKPI 100

[Close]

BLAST of CcUC06G123740 vs. NCBI nr
Match: KAG6589677.1 (hypothetical protein SDJN03_15100, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.5 bits (371), Expect = 6.2e-32
Identity = 75/101 (74.26%), Postives = 86/101 (85.15%), Query Frame = 0


Query: 1   MGMEILEEFQPLTPLSSSLQFIIPKDKT----QEEEECLTPTAAAARLKPAVVCPPAPKK 60
           MGME+LEEF+PLTPL  SL   +PK+K     QE+E+C TPTAAA RLKP +VCPPAPKK
Sbjct: 1   MGMEVLEEFRPLTPL-RSLSLQLPKEKADQNIQEQEDCQTPTAAATRLKPTMVCPPAPKK 60

Query: 61  PRPPRRKLNFLPPPFFEAPQDLNSLYFQLHIPSKKIKPIST 98
           PRPPRRKLNFLPPPFFEAPQDL+S+Y +L IPSKKIKPI+T
Sbjct: 61  PRPPRRKLNFLPPPFFEAPQDLSSVYIELQIPSKKIKPITT 100

[Close]

BLAST of CcUC06G123740 vs. NCBI nr
Match: KAG6587720.1 (hypothetical protein SDJN03_16285, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.2 bits (339), Expect = 3.2e-28
Identity = 67/101 (66.34%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 1   MGMEILEEFQPLTPLSSSLQFIIPKDK----TQEEEECLTPTAAAARLKPAVVCPPAPKK 60
           MGME+++EF+PLTPL  +    IPK++     Q+ EEC TPTAA +RLKP + CPPAPKK
Sbjct: 1   MGMEVMDEFRPLTPLRLTPSLQIPKERRDFQEQQPEECQTPTAAGSRLKPTMECPPAPKK 60

Query: 61  PRPPRRKLNFLPPPFFEAPQDLNSLYFQLHIPSKKIKPIST 98
           PRPPRRKLNF PP FF+APQDL S+YF+L  PSKKIKPIST
Sbjct: 61  PRPPRRKLNFQPPSFFDAPQDLKSVYFELQFPSKKIKPIST 101

[Close]

BLAST of CcUC06G123740 vs. NCBI nr
Match: GAV59718.1 (hypothetical protein CFOL_v3_03249 [Cephalotus follicularis])

HSP 1 Score: 82.4 bits (202), Expect = 2.5e-12
Identity = 53/111 (47.75%), Postives = 66/111 (59.46%), Query Frame = 0


Query: 1   MGMEILEEFQPLTPLS----------SSLQFIIPKDKTQE------EEECLTPTAAAARL 60
           MG+E+ EEF+P+T +           S +  I    KTQE      EEEC TP +A + L
Sbjct: 1   MGLEMPEEFRPITTIRTVSTARLTSFSYVSKISDSKKTQELNGLDNEEECQTPKSAESTL 60

Query: 61  KPAVVCPPAPKKPRPPRRKLNFLPPPFFEAPQDLNSLYFQLHIPSKKIKPI 96
              +VCPPAP K RPP+RKL   P  FFE P DL SL+F L+ PSKKI+PI
Sbjct: 61  --ILVCPPAPSKARPPKRKLCPPPQGFFEVPHDLASLFFSLNTPSKKIRPI 109

[Close]

BLAST of CcUC06G123740 vs. NCBI nr
Match: KAE8056731.1 (hypothetical protein FH972_013476 [Carpinus fangiana])

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-10
Identity = 49/106 (46.23%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 1   MGMEILEEFQPLTPL--------SSSLQFIIPKDKTQE----EEECLTPTAAAARLKPAV 60
           MG+EILEEF+P+TP+        SS    +   ++T+E    + EC TP ++   LK  +
Sbjct: 1   MGLEILEEFRPVTPIRTISITRSSSHATELSEPEETKEVALDDVECHTPKSSVHTLKSPL 60

Query: 61  VCPPAPKKPRPPRRKLNFLPPPFFEAPQDLNSLYF-QLHIPSKKIK 94
           VCPPAPKKPRP RRKL+  P   F+ P DL S+ F  L  PSKKI+
Sbjct: 61  VCPPAPKKPRPARRKLSPPPQRIFQVPHDLASVVFMSLTKPSKKIR 106

[Close]

BLAST of CcUC06G123740 vs. ExPASy TrEMBL
Match: A0A0A0M005 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G426970 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.3e-38
Identity = 85/101 (84.16%), Postives = 91/101 (90.10%), Query Frame = 0


Query: 1   MGMEILEEFQPLTPLSSSLQFIIPKDKTQ------EEEECLTPTAAAARLKPAVVCPPAP 60
           MGMEIL+EF PLTPL SSLQFIIPK KT+      +EEECLTPTAAAARLKPA++CPPAP
Sbjct: 1   MGMEILDEFSPLTPL-SSLQFIIPKHKTEQQQQEDQEEECLTPTAAAARLKPAIICPPAP 60

Query: 61  KKPRPPRRKLNFLPPPFFEAPQDLNSLYFQLHIPSKKIKPI 96
           KKPRPPRRKLNFLPPPFFEAPQDLNS+YFQ HIPSKKIKPI
Sbjct: 61  KKPRPPRRKLNFLPPPFFEAPQDLNSVYFQFHIPSKKIKPI 100

[Close]

BLAST of CcUC06G123740 vs. ExPASy TrEMBL
Match: A0A1Q3AVG9 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03249 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-12
Identity = 53/111 (47.75%), Postives = 66/111 (59.46%), Query Frame = 0


Query: 1   MGMEILEEFQPLTPLS----------SSLQFIIPKDKTQE------EEECLTPTAAAARL 60
           MG+E+ EEF+P+T +           S +  I    KTQE      EEEC TP +A + L
Sbjct: 1   MGLEMPEEFRPITTIRTVSTARLTSFSYVSKISDSKKTQELNGLDNEEECQTPKSAESTL 60

Query: 61  KPAVVCPPAPKKPRPPRRKLNFLPPPFFEAPQDLNSLYFQLHIPSKKIKPI 96
              +VCPPAP K RPP+RKL   P  FFE P DL SL+F L+ PSKKI+PI
Sbjct: 61  --ILVCPPAPSKARPPKRKLCPPPQGFFEVPHDLASLFFSLNTPSKKIRPI 109

[Close]

BLAST of CcUC06G123740 vs. ExPASy TrEMBL
Match: A0A5N6R7V3 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013476 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 49/106 (46.23%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 1   MGMEILEEFQPLTPL--------SSSLQFIIPKDKTQE----EEECLTPTAAAARLKPAV 60
           MG+EILEEF+P+TP+        SS    +   ++T+E    + EC TP ++   LK  +
Sbjct: 1   MGLEILEEFRPVTPIRTISITRSSSHATELSEPEETKEVALDDVECHTPKSSVHTLKSPL 60

Query: 61  VCPPAPKKPRPPRRKLNFLPPPFFEAPQDLNSLYF-QLHIPSKKIK 94
           VCPPAPKKPRP RRKL+  P   F+ P DL S+ F  L  PSKKI+
Sbjct: 61  VCPPAPKKPRPARRKLSPPPQRIFQVPHDLASVVFMSLTKPSKKIR 106

[Close]

BLAST of CcUC06G123740 vs. ExPASy TrEMBL
Match: A0A2N9GCU9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25207 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.7e-09
Identity = 47/104 (45.19%), Postives = 66/104 (63.46%), Query Frame = 0


Query: 1   MGMEILEEFQPLTP---LSSSLQF-----IIPKDKTQEEE--ECLTPTAAAARLKPA-VV 60
           MG+EILEEF+P+TP   +S + +F     +   D+T+E +  EC TP + A   K   +V
Sbjct: 1   MGLEILEEFRPVTPIQAISEARRFNHGAGLYDLDETKELDNVECHTPKSPAHTFKSVPLV 60

Query: 61  CPPAPKKPRPPRRKLNFLPPPFFEAPQDLNSLYFQLHIPSKKIK 94
           CPPAPKKPRP R KL+     +F+ P DL S++  L+ PSKKI+
Sbjct: 61  CPPAPKKPRPARIKLSPPAQGYFKVPHDLASVFISLNNPSKKIR 104

[Close]

BLAST of CcUC06G123740 vs. ExPASy TrEMBL
Match: A0A059CL15 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C00076 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.1e-09
Identity = 46/109 (42.20%), Postives = 62/109 (56.88%), Query Frame = 0


Query: 1   MGMEILEEFQPLTPL-------SSSLQFIIPKDKTQ------EEEECLTPTAAAARL--K 60
           MGM + EEF+P TP+        S L  + P ++ Q      +E+EC TP +    +   
Sbjct: 1   MGMGVSEEFRPSTPIRTIVVSSGSKLSDLAPCERKQLHSSPDDEDECRTPKSCPDPMTGH 60

Query: 61  PAVVCPPAPKKPRPPRRKLNFLPPP-FFEAPQDLNSLYFQLHIPSKKIK 94
            A  CPPAPKKPRPPRRK +  PP  FF+ P DL S++  +  PSKKI+
Sbjct: 61  TARACPPAPKKPRPPRRKASGPPPQGFFQVPHDLASVFLVIGKPSKKIR 109

The following BLAST results are available for this feature:

BLAST of CcUC06G123740 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65496.1	1.3e-37	84.16	hypothetical protein Csa_019987 [Cucumis sativus]	[more]
KAG6589677.1	6.2e-32	74.26	hypothetical protein SDJN03_15100, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6587720.1	3.2e-28	66.34	hypothetical protein SDJN03_16285, partial [Cucurbita argyrosperma subsp. sorori...	[more]
GAV59718.1	2.5e-12	47.75	hypothetical protein CFOL_v3_03249 [Cephalotus follicularis]	[more]
KAE8056731.1	2.3e-10	46.23	hypothetical protein FH972_013476 [Carpinus fangiana]	[more]

BLAST of CcUC06G123740 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC06G123740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M005	6.3e-38	84.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G426970 PE=4 SV=1	[more]
A0A1Q3AVG9	1.2e-12	47.75	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03249 PE=4...	[more]
A0A5N6R7V3	1.1e-10	46.23	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013476 PE=4 SV=1	[more]
A0A2N9GCU9	2.7e-09	45.19	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25207 PE=4 SV=1	[more]
A0A059CL15	6.1e-09	42.20	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C00076 PE=4 SV...	[more]

BLAST of CcUC06G123740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35162:SF2	OS08G0516600 PROTEIN	coord: 1..93
None	No IPR available	PANTHER	PTHR35162	OS08G0516600 PROTEIN	coord: 1..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G123740.1	CcUC06G123740.1	mRNA