CcUC06G123200 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G123200
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	4CL
Location	CicolChr06: 25565165 .. 25565446 (+)
RNA-Seq Expression	CcUC06G123200
Synteny	CcUC06G123200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGACCGTGGGATATAAGCAGGGCTTCCAACTCCGCCGGCGCCACTTGGAAGCCTTTGTATTTGATCAGCTCCTTGAGACGATCGACGATGAAGACCTCGTCGTCGTCATCGACGAAACCTATATCGCCGGTGTGCAGCCATCCATCTTTATCAATTATGCCCCTCGTGGCCTCTTCGTCGTTGAGGTATCCTGTTCAATTCAACCAACCAAAACCGGAACACAGCAATGTAATGGACTCTGTCGATTCTATTGGGCTTGGTTTGGTCTTGGGTAATTGA

mRNA sequence

ATGCGACCGTGGGATATAAGCAGGGCTTCCAACTCCGCCGGCGCCACTTGGAAGCCTTTGTATTTGATCAGCTCCTTGAGACGATCGACGATGAAGACCTCGTCGTCGTCATCGACGAAACCTATATCGCCGGTGTGCAGCCATCCATCTTTATCAATTATGCCCCTCGTGGCCTCTTCGTCGTTGAGGTATCCTGTTCAATTCAACCAACCAAAACCGGAACACAGCAATGTAATGGACTCTGTCGATTCTATTGGGCTTGGTTTGGTCTTGGGTAATTGA

Coding sequence (CDS)

ATGCGACCGTGGGATATAAGCAGGGCTTCCAACTCCGCCGGCGCCACTTGGAAGCCTTTGTATTTGATCAGCTCCTTGAGACGATCGACGATGAAGACCTCGTCGTCGTCATCGACGAAACCTATATCGCCGGTGTGCAGCCATCCATCTTTATCAATTATGCCCCTCGTGGCCTCTTCGTCGTTGAGGTATCCTGTTCAATTCAACCAACCAAAACCGGAACACAGCAATGTAATGGACTCTGTCGATTCTATTGGGCTTGGTTTGGTCTTGGGTAATTGA

Protein sequence

MRPWDISRASNSAGATWKPLYLISSLRRSTMKTSSSSSTKPISPVCSHPSLSIMPLVASSSLRYPVQFNQPKPEHSNVMDSVDSIGLGLVLGN

Homology

[Close]

BLAST of CcUC06G123200 vs. NCBI nr
Match: KAB8086116.1 (hypothetical protein EE612_009227, partial [Oryza sativa] >BAS77269.1 Os02g0177666, partial [Oryza sativa Japonica Group])

HSP 1 Score: 67.4 bits (163), Expect = 7.4e-08
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 6  ISRASNSAGATWKPLYLISSLRRSTMKTSSSSSTKPISPVCSHPSL 52
          +S AS+SAG TW PLYL+ SL  STMK SSSSSTKP+SPVCSHPS+
Sbjct: 1  MSSASSSAGGTWNPLYLMISLSLSTMKISSSSSTKPMSPVCSHPSM 46

[Close]

BLAST of CcUC06G123200 vs. NCBI nr
Match: OMJ26057.1 (hypothetical protein AYI70_g481 [Smittium culicis])

HSP 1 Score: 65.1 bits (157), Expect = 3.7e-07
Identity = 38/59 (64.41%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 7  SRASNSAGATWKPLYLISSLRRSTMKTSSSSSTKPISPVCSHPSLSIMPLVASSSLRYP 66
          SR S+SAGATW PLYLISSL  ST+ T  SSS  P SPV  +PSLSI  LVAS   +YP
Sbjct: 29 SRLSSSAGATWNPLYLISSLILSTINTFVSSSMYPTSPVWKNPSLSIESLVASGLFKYP 87

[Close]

BLAST of CcUC06G123200 vs. ExPASy TrEMBL
Match: A0A0A9RG59 (4CL OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-12
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 1  MRPWDISRASNSAGATWKPLYLISSLRRSTMKTSSSSSTKPISPVCSHPSLSIMPLVASS 60
          M  W +SRAS+SAG TW PL L+SSL RSTMKTSSSSST P+SPV S PS SI+  VAS 
Sbjct: 7  MEGWAMSRASSSAGGTWNPLNLMSSLTRSTMKTSSSSSTYPMSPVWSQPSTSIVLAVASG 66

Query: 61 SLRYP 66
          S RYP
Sbjct: 67 SFRYP 71

[Close]

BLAST of CcUC06G123200 vs. ExPASy TrEMBL
Match: A0A0A9NIU0 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.3e-10
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 8  RASNSAGATWKPLYLISSLRRSTMKTSSSSSTKPISPVCSHPSLSIMPLVASSSLR 64
          RAS+SAG TW PLYL+ SL  STMK SSSSSTKP+SPVCSHPSLS++  V S S R
Sbjct: 29 RASSSAGGTWNPLYLMISLSLSTMKISSSSSTKPMSPVCSHPSLSMVFFVDSGSFR 84

[Close]

BLAST of CcUC06G123200 vs. ExPASy TrEMBL
Match: A0A0P0VFD8 (Os02g0177666 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0177666 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.6e-08
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 6  ISRASNSAGATWKPLYLISSLRRSTMKTSSSSSTKPISPVCSHPSL 52
          +S AS+SAG TW PLYL+ SL  STMK SSSSSTKP+SPVCSHPS+
Sbjct: 1  MSSASSSAGGTWNPLYLMISLSLSTMKISSSSSTKPMSPVCSHPSM 46

[Close]

BLAST of CcUC06G123200 vs. ExPASy TrEMBL
Match: A0A1R1YGL6 (Uncharacterized protein OS=Smittium culicis OX=133412 GN=AYI70_g481 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-07
Identity = 38/59 (64.41%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 7  SRASNSAGATWKPLYLISSLRRSTMKTSSSSSTKPISPVCSHPSLSIMPLVASSSLRYP 66
          SR S+SAGATW PLYLISSL  ST+ T  SSS  P SPV  +PSLSI  LVAS   +YP
Sbjct: 29 SRLSSSAGATWNPLYLISSLILSTINTFVSSSMYPTSPVWKNPSLSIESLVASGLFKYP 87

The following BLAST results are available for this feature:

BLAST of CcUC06G123200 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB8086116.1	7.4e-08	73.91	hypothetical protein EE612_009227, partial [Oryza sativa] >BAS77269.1 Os02g01776...	[more]
OMJ26057.1	3.7e-07	64.41	hypothetical protein AYI70_g481 [Smittium culicis]	[more]

BLAST of CcUC06G123200 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC06G123200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A9RG59	1.1e-12	69.23	4CL OS=Arundo donax OX=35708 PE=4 SV=1	[more]
A0A0A9NIU0	2.3e-10	71.43	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
A0A0P0VFD8	3.6e-08	73.91	Os02g0177666 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os02...	[more]
A0A1R1YGL6	1.8e-07	64.41	Uncharacterized protein OS=Smittium culicis OX=133412 GN=AYI70_g481 PE=4 SV=1	[more]

BLAST of CcUC06G123200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G123200.1	CcUC06G123200.1	mRNA