CcUC06G122600 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G122600
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	glycine-rich protein DOT1-like
Location	CicolChr06: 24966566 .. 24966970 (-)
RNA-Seq Expression	CcUC06G122600
Synteny	CcUC06G122600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTCCATCAAAGCTATTTCTGTTCTTTGTTTAGTACTGTGTATGTCTGTGATTGAATCACAAGCGGGGCGTGTGGCCAGGAAGGACCTAGGCCTTGATCTTGGTGGCGTGGGAGTTGGCCTTGGCCTTGGCTTAGGCTTGGGCTTAGGCGATGGAAGTGGGTCGGGTTCTGGAGCCGGGTCTGGATCCGGATCCGGGTCTGGTTCATATTCGTCATCGTCGTCACACTCATCAAGCTCTAGCTATGGAGGCTCCGGTGCAGGCTCTGAAGCTGGTTCGTACGCTGGGTCTTATGCAGGGTCACGTGCTGGCTCAGGAGCCGGCAGAGGAAACCGCGGCGGCGGTGGAGAGGGCCATGGCTACGGCGAGGGACGTGGTTACGGTGAAGGTGGCAACAACTAA

mRNA sequence

ATGGGCTCCATCAAAGCTATTTCTGTTCTTTGTTTAGTACTGTGTATGTCTGTGATTGAATCACAAGCGGGGCGTGTGGCCAGGAAGGACCTAGGCCTTGATCTTGGTGGCGTGGGAGTTGGCCTTGGCCTTGGCTTAGGCTTGGGCTTAGGCGATGGAAGTGGGTCGGGTTCTGGAGCCGGGTCTGGATCCGGATCCGGGTCTGGTTCATATTCGTCATCGTCGTCACACTCATCAAGCTCTAGCTATGGAGGCTCCGGTGCAGGCTCTGAAGCTGGTTCGTACGCTGGGTCTTATGCAGGGTCACGTGCTGGCTCAGGAGCCGGCAGAGGAAACCGCGGCGGCGGTGGAGAGGGCCATGGCTACGGCGAGGGACGTGGTTACGGTGAAGGTGGCAACAACTAA

Coding sequence (CDS)

ATGGGCTCCATCAAAGCTATTTCTGTTCTTTGTTTAGTACTGTGTATGTCTGTGATTGAATCACAAGCGGGGCGTGTGGCCAGGAAGGACCTAGGCCTTGATCTTGGTGGCGTGGGAGTTGGCCTTGGCCTTGGCTTAGGCTTGGGCTTAGGCGATGGAAGTGGGTCGGGTTCTGGAGCCGGGTCTGGATCCGGATCCGGGTCTGGTTCATATTCGTCATCGTCGTCACACTCATCAAGCTCTAGCTATGGAGGCTCCGGTGCAGGCTCTGAAGCTGGTTCGTACGCTGGGTCTTATGCAGGGTCACGTGCTGGCTCAGGAGCCGGCAGAGGAAACCGCGGCGGCGGTGGAGAGGGCCATGGCTACGGCGAGGGACGTGGTTACGGTGAAGGTGGCAACAACTAA

Protein sequence

MGSIKAISVLCLVLCMSVIESQAGRVARKDLGLDLGGVGVGLGLGLGLGLGDGSGSGSGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGAGRGNRGGGGEGHGYGEGRGYGEGGNN

Homology

[Close]

BLAST of CcUC06G122600 vs. NCBI nr
Match: XP_038880102.1 (glycine-rich cell wall structural protein 2-like [Benincasa hispida])

HSP 1 Score: 184.9 bits (468), Expect = 4.6e-43
Identity = 124/134 (92.54%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MGSIKAISVLCLVLCMSVIESQAGRVARKDLGLDLGGVGVGLGLGLGLGLGDGSGSGSGA 60
           M +IKAI+VLCLVLCMSVIES AGRVARKDLGLDLGG+GVGLGLGLGLGLG GSGSG+GA
Sbjct: 1   MATIKAIAVLCLVLCMSVIESGAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSGAGA 60

Query: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGAGRGNRGGGGEGH 120
           GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSG+GRGN  GGGEGH
Sbjct: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGRGNGRGGGEGH 120

Query: 121 GYGEGRGYGEGGNN 135
           GYGEGRGYGEGGNN
Sbjct: 121 GYGEGRGYGEGGNN 134

[Close]

BLAST of CcUC06G122600 vs. NCBI nr
Match: XP_011656027.1 (glycine-rich protein DOT1 [Cucumis sativus] >KGN65264.1 hypothetical protein Csa_020034 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 3.3e-41
Identity = 121/134 (90.30%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 1   MGSIKAISVLCLVLCMSVIESQAGRVARKDLGLDLGGVGVGLGLGLGLGLGDGSGSGSGA 60
           M SIKAI+VLCLVLCMSVIES+AGRVARKDLGLDLGG+GVGLGLGLGLGLG GSGSG+GA
Sbjct: 1   MASIKAIAVLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSGAGA 60

Query: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGAGRGNRGGGGEGH 120
           GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSG+G  N   GGEGH
Sbjct: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGSRNGASGGEGH 120

Query: 121 GYGEGRGYGEGGNN 135
           GYGEG GYGEGGNN
Sbjct: 121 GYGEGHGYGEGGNN 134

[Close]

BLAST of CcUC06G122600 vs. NCBI nr
Match: XP_008443814.1 (PREDICTED: glycine-rich protein DOT1-like [Cucumis melo] >KAA0035122.1 glycine-rich protein DOT1-like [Cucumis melo var. makuwa] >TYJ95958.1 glycine-rich protein DOT1-like [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 7.6e-38
Identity = 118/136 (86.76%), Postives = 124/136 (91.18%), Query Frame = 0


Query: 1   MGSIKAISVLCLVLCMSVIESQAGRVARKDLGLDLGGVGVGLGLGLGLGLGDGSGSGSGA 60
           M SIKAI VLCLVLCMSVIES+AGRVARK+LGLDLGG+GVGLGLGLGLG+G GSGSG+GA
Sbjct: 1   MASIKAIGVLCLVLCMSVIESEAGRVARKNLGLDLGGLGVGLGLGLGLGVGGGSGSGAGA 60

Query: 61  --GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGAGRGNRGGGGE 120
             GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSG+ R N   GGE
Sbjct: 61  GSGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSDRRNGASGGE 120

Query: 121 GHGYGEGRGYGEGGNN 135
            HGYGEG GYGEGGNN
Sbjct: 121 AHGYGEGHGYGEGGNN 136

[Close]

BLAST of CcUC06G122600 vs. NCBI nr
Match: XP_022921885.1 (glycine-rich protein DOT1-like [Cucurbita moschata])

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-31
Identity = 113/139 (81.29%), Postives = 120/139 (86.33%), Query Frame = 0


Query: 1   MGSIKAISVLCLVLCMSVIESQAGRVARKDLGLDLGGVGVGLGLGLGLGLGDGSGSGSGA 60
           M SI+AI+VLC V+CMS IESQ GRVARKDLGLDLGG+GVGLG+GLGLGLG GSGSGSG+
Sbjct: 1   MTSIRAIAVLCFVVCMSAIESQ-GRVARKDLGLDLGGLGVGLGVGLGLGLGGGSGSGSGS 60

Query: 61  GSGSGSGSGSYSS--SSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGAGRGNRGGG-- 120
           GSGSGSGSGS S   SSS SSSSSYGGSGAGSEAGSYAGSYAGSR GS +GR  R GG  
Sbjct: 61  GSGSGSGSGSGSGSYSSSQSSSSSYGGSGAGSEAGSYAGSYAGSRGGSDSGRNYRNGGSG 120

Query: 121 -GEGHGYGEGRGYGEGGNN 135
            GEG GYGEGRGYGEGGNN
Sbjct: 121 YGEGRGYGEGRGYGEGGNN 138

[Close]

BLAST of CcUC06G122600 vs. NCBI nr
Match: XP_023515820.1 (putative glycine-rich cell wall structural protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 143.7 bits (361), Expect = 1.2e-30
Identity = 109/140 (77.86%), Postives = 117/140 (83.57%), Query Frame = 0


Query: 1   MGSIKAISVLCLVLCMSVIESQAGRVARKDLGLDLGGVGVGLGLGLGLGLGDGSGSGSGA 60
           M SI++I+VLC V+CMS IESQ GRVARKDLGLDLGG+GVGLG+GLGLGLG GSGSGSG+
Sbjct: 1   MTSIRSIAVLCFVVCMSAIESQ-GRVARKDLGLDLGGLGVGLGVGLGLGLGGGSGSGSGS 60

Query: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGS---------GAGRG 120
           GSGSGSGSGSY  SSS SSSSSYGGSGAGSEAGSYAGSYAGSR GS         G+G G
Sbjct: 61  GSGSGSGSGSY--SSSQSSSSSYGGSGAGSEAGSYAGSYAGSRGGSDSGRNYRNGGSGYG 120

Query: 121 NRGGGGEGHGYGEGRGYGEG 132
             GGGG G GYGEGRGYGEG
Sbjct: 121 GGGGGGRGEGYGEGRGYGEG 137

[Close]

BLAST of CcUC06G122600 vs. ExPASy TrEMBL
Match: A0A0A0LW94 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278490 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.6e-41
Identity = 121/134 (90.30%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 1   MGSIKAISVLCLVLCMSVIESQAGRVARKDLGLDLGGVGVGLGLGLGLGLGDGSGSGSGA 60
           M SIKAI+VLCLVLCMSVIES+AGRVARKDLGLDLGG+GVGLGLGLGLGLG GSGSG+GA
Sbjct: 1   MASIKAIAVLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSGAGA 60

Query: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGAGRGNRGGGGEGH 120
           GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSG+G  N   GGEGH
Sbjct: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGSRNGASGGEGH 120

Query: 121 GYGEGRGYGEGGNN 135
           GYGEG GYGEGGNN
Sbjct: 121 GYGEGHGYGEGGNN 134

[Close]

BLAST of CcUC06G122600 vs. ExPASy TrEMBL
Match: A0A5A7SV53 (Glycine-rich protein DOT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00240 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.7e-38
Identity = 118/136 (86.76%), Postives = 124/136 (91.18%), Query Frame = 0


Query: 1   MGSIKAISVLCLVLCMSVIESQAGRVARKDLGLDLGGVGVGLGLGLGLGLGDGSGSGSGA 60
           M SIKAI VLCLVLCMSVIES+AGRVARK+LGLDLGG+GVGLGLGLGLG+G GSGSG+GA
Sbjct: 1   MASIKAIGVLCLVLCMSVIESEAGRVARKNLGLDLGGLGVGLGLGLGLGVGGGSGSGAGA 60

Query: 61  --GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGAGRGNRGGGGE 120
             GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSG+ R N   GGE
Sbjct: 61  GSGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSDRRNGASGGE 120

Query: 121 GHGYGEGRGYGEGGNN 135
            HGYGEG GYGEGGNN
Sbjct: 121 AHGYGEGHGYGEGGNN 136

[Close]

BLAST of CcUC06G122600 vs. ExPASy TrEMBL
Match: A0A1S3B9P9 (glycine-rich protein DOT1-like OS=Cucumis melo OX=3656 GN=LOC103487317 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.7e-38
Identity = 118/136 (86.76%), Postives = 124/136 (91.18%), Query Frame = 0


Query: 1   MGSIKAISVLCLVLCMSVIESQAGRVARKDLGLDLGGVGVGLGLGLGLGLGDGSGSGSGA 60
           M SIKAI VLCLVLCMSVIES+AGRVARK+LGLDLGG+GVGLGLGLGLG+G GSGSG+GA
Sbjct: 1   MASIKAIGVLCLVLCMSVIESEAGRVARKNLGLDLGGLGVGLGLGLGLGVGGGSGSGAGA 60

Query: 61  --GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGAGRGNRGGGGE 120
             GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSG+ R N   GGE
Sbjct: 61  GSGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSDRRNGASGGE 120

Query: 121 GHGYGEGRGYGEGGNN 135
            HGYGEG GYGEGGNN
Sbjct: 121 AHGYGEGHGYGEGGNN 136

[Close]

BLAST of CcUC06G122600 vs. ExPASy TrEMBL
Match: A0A6J1E720 (glycine-rich protein DOT1-like OS=Cucurbita moschata OX=3662 GN=LOC111430016 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 5.2e-32
Identity = 113/139 (81.29%), Postives = 120/139 (86.33%), Query Frame = 0


Query: 1   MGSIKAISVLCLVLCMSVIESQAGRVARKDLGLDLGGVGVGLGLGLGLGLGDGSGSGSGA 60
           M SI+AI+VLC V+CMS IESQ GRVARKDLGLDLGG+GVGLG+GLGLGLG GSGSGSG+
Sbjct: 1   MTSIRAIAVLCFVVCMSAIESQ-GRVARKDLGLDLGGLGVGLGVGLGLGLGGGSGSGSGS 60

Query: 61  GSGSGSGSGSYSS--SSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGAGRGNRGGG-- 120
           GSGSGSGSGS S   SSS SSSSSYGGSGAGSEAGSYAGSYAGSR GS +GR  R GG  
Sbjct: 61  GSGSGSGSGSGSGSYSSSQSSSSSYGGSGAGSEAGSYAGSYAGSRGGSDSGRNYRNGGSG 120

Query: 121 -GEGHGYGEGRGYGEGGNN 135
            GEG GYGEGRGYGEGGNN
Sbjct: 121 YGEGRGYGEGRGYGEGGNN 138

[Close]

BLAST of CcUC06G122600 vs. ExPASy TrEMBL
Match: A0A6J1C269 (glycine-rich cell wall structural protein 2-like OS=Momordica charantia OX=3673 GN=LOC111007265 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.1e-29
Identity = 109/152 (71.71%), Postives = 120/152 (78.95%), Query Frame = 0


Query: 1   MGSIKAISVLCLVLCMSVIESQAGRVARKDLGLDLGGVGVGLGLGLGLGLGDGSGSGSGA 60
           M SI+AI+ +C V+C   IESQA RVARKDLGLDLGG+G+GLG G+GLG+G GSGSG+GA
Sbjct: 1   MASIRAIAFVCFVVCFCAIESQA-RVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAGA 60

Query: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGS-------------- 120
           GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGS AGS +GS              
Sbjct: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSRAGSGSGSGRNYRNGGSGSGSG 120

Query: 121 ---GAGRGNRGGGGEGHGYGEGRGY-GEGGNN 135
              G+GRGN  G GEGHGYGEGRGY GEGGNN
Sbjct: 121 YGEGSGRGNGEGYGEGHGYGEGRGYGGEGGNN 151

[Close]

BLAST of CcUC06G122600 vs. TAIR 10
Match: AT4G30460.1 (glycine-rich protein )

HSP 1 Score: 88.2 bits (217), Expect = 5.5e-18
Identity = 85/140 (60.71%), Postives = 105/140 (75.00%), Query Frame = 0


Query: 1   MGSIKAISVLCLVLCMSVIESQAGRVARKDLGLDLGGVGVGLGLGLGLGLGDGSGSGSGA 60
           + +  ++ ++ L+L  SV+ S++ RVARKDLGLDLGG+G G+G+G+G+G G GSGSG+GA
Sbjct: 4   LNNSSSLILITLILATSVLVSES-RVARKDLGLDLGGIGAGIGIGIGIG-GGGSGSGAGA 63

Query: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSG--AGSEAGSYAGSYAGS----RAGSGAGRGNRG 120
           GSGSG G  S SSSSS SSSSS GG G  AGSEAGSYAGS+AGS    R+GSG GRG+ G
Sbjct: 64  GSGSGGGGSSSSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGG 123

Query: 121 GGGEGHGYGEGRGYGEGGNN 135
           GGG G G G G G G GG +
Sbjct: 124 GGGHGGGGGGGGGRGGGGGS 141

[Close]

BLAST of CcUC06G122600 vs. TAIR 10
Match: AT4G30450.1 (glycine-rich protein )

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-17
Identity = 70/109 (64.22%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 1   MGSIKAISVLCLVLCMSVIESQAGRVARKDLGLDLGGVGVGLGLGLGLGLGDGSGSGSGA 60
           M   + + +L LV+  S++     R+ARKDLG+DLGG+G+GLG+GLG+GLG GSGSG+GA
Sbjct: 1   MAKAEGLFLLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGA 60

Query: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGAG 110
           GSGSGSGS S SSSSS SSSSS   SG+G  AGS AGS+AGSRAGSG+G
Sbjct: 61  GSGSGSGSRSSSSSSSSSSSSS---SGSGGSAGSSAGSFAGSRAGSGSG 106

The following BLAST results are available for this feature:

BLAST of CcUC06G122600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880102.1	4.6e-43	92.54	glycine-rich cell wall structural protein 2-like [Benincasa hispida]	[more]
XP_011656027.1	3.3e-41	90.30	glycine-rich protein DOT1 [Cucumis sativus] >KGN65264.1 hypothetical protein Csa...	[more]
XP_008443814.1	7.6e-38	86.76	PREDICTED: glycine-rich protein DOT1-like [Cucumis melo] >KAA0035122.1 glycine-r...	[more]
XP_022921885.1	1.1e-31	81.29	glycine-rich protein DOT1-like [Cucurbita moschata]	[more]
XP_023515820.1	1.2e-30	77.86	putative glycine-rich cell wall structural protein 1 [Cucurbita pepo subsp. pepo...	[more]

BLAST of CcUC06G122600 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC06G122600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW94	1.6e-41	90.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278490 PE=4 SV=1	[more]
A0A5A7SV53	3.7e-38	86.76	Glycine-rich protein DOT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B9P9	3.7e-38	86.76	glycine-rich protein DOT1-like OS=Cucumis melo OX=3656 GN=LOC103487317 PE=4 SV=1	[more]
A0A6J1E720	5.2e-32	81.29	glycine-rich protein DOT1-like OS=Cucurbita moschata OX=3662 GN=LOC111430016 PE=...	[more]
A0A6J1C269	1.1e-29	71.71	glycine-rich cell wall structural protein 2-like OS=Momordica charantia OX=3673 ...	[more]

BLAST of CcUC06G122600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30460.1	5.5e-18	60.71	glycine-rich protein	[more]
AT4G30450.1	1.2e-17	64.22	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..88
None	No IPR available	PANTHER	PTHR38934	HYPHALLY REGULATED CELL WALL PROTEIN 1	coord: 1..132
None	No IPR available	PANTHER	PTHR38934:SF13	GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1-RELATED	coord: 1..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G122600.1	CcUC06G122600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane