CcUC06G120650 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G120650
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr06: 22473711 .. 22476759 (-)
RNA-Seq Expression	CcUC06G120650
Synteny	CcUC06G120650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCTCCAGAAAGCTCCAACCAAATTTCTTCTCTCTTATACGCGAAGTAATCACTACCGGTGCTAATAAGCCCTTTGCATATGTATGATTTCTATAAGCGGACTGCAAAAATTTCATGTTTGTATTTTACAGATGATAAAGATGTTTCCTAGGTGACGACGGTGACTCTCGCTTCCACTGAGATTGAAGGTGTTCCGACAAAAGTCGAAAGCGGGAAAGTAAGGTTAGACATGATTCAAAATCAAATTTCAAAACTGCCCCTATTCAAAATTCGTACACTCAGAACTTCTGTTCCGACACTATTTTCATGCCAGCACGGCGTGTTTTCTATATTATTATTATTATTTCTTTTTTTCGATTTCGTAAAGTCTGCCTACAATTTGTTCTTTTGAAATACGTGTAGAGATAGATCGTCCTGGTGGCTGTATGTGTATTTTGGATCTATTCTTGTGAAGTGTTTGGGGAACAAGTTCAACTAAGAAATTTTCCATGATAAGCTGATTGGAATCTACAAAGTTAAAAATAGCCTAATTAGATAATGAAAGCGGATTATACTATATAATTAGCCTGCTAAGATTCTCTAGAGATTGTACCTTTTTCTAGGGAACATAAAATCTTCTTTACCGCCACAAATCAAAGTTGGGTTGACTCAGAATTTGAGCCTAATAATATTATTAGAAGGATGTTCCCATTAATGTCCGTTGAAGTGGGGCATCTGGTTCTTATCTGTTTTTATATATAAGAATGGTTTGATGCTTAAAGGACCATAAATTATTGAGCTGAAAATTGATTTTATCTCCTTAGGAACTTGCTATTCACACAGATTCTGAATCTTATTCAATACCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCCCCCCCCCCCCCCCCCTTCTCTTTCATAATCTTTTCCCCCTGTTTAACCTTCTGGTTCAATCTGAAAGAGCTCACTGACCTAAGTTTAAGCCTTAATAGTTTTCATTTCAATTTGATTCTATGTTTCTAAAGCAAACATTGACGTCCCATGGAGGACCATCCAAACACAGTATTTGGATATGTTTGTTCCCGTTTTGCGCACCCATTAGAAAGAGAGAGTAGCTAGCTAATATTTCAATGCTAGAATGGGAAAATGGGCCTTCACCCATGATATCTATATTTAGGATCATTCTAAGGGCTTACATTATTGTTGTTAGTCATTAAAAAAGAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAGGCAGCCTTTGGATAGGGATCGGATGCCAAGGAAGACCATATAATCGCATAAGGAGAGCCTTCCAAAATTCCTTCCCGCTTTAAACTGCACCACCTGAAAGATAGAGCACCCAAAATTGTATCACACACCCAAGTGACTAACAAACAAATTAAACCGCATCTACTGGTTAATTTTATTAACCACTTTTTGAGGGGCAGATAAACAGAGGTGTAAATGTTTTTAATTGATATAAACTTACCGAAATCTCTTGGTGTTTTGCATTTAAAACACTCCATCCTGCTTGCATAATTATGTACTCCGCATCCCATTCTGCACAACATAACATTAACTATTAATTTAGCATATTTAATGCTGGTATGAATTTAAATAACAATAACCAACTACGGTATATATGTTTTCTGTATGATCTTTTGAGTAAGGAAAATTTGAAGTTCTCTAGCTAAGCAAGTGTAAATTTATGCAGATTCTATATCATGTTCAGAATTACTCCAAACATGTTTTGATCATTCAAAATTTGGTTAAAAATTTGATTTCTTACTCTTGTAAACTTGATTTTTATACCATCTAAATAATTTTGATTAATTACAAATATGTTTTGGAGTGATTCTCAACGTGAAATGATTTTAACCATTACGAAATTGCTCCTACTTCAGCACATACATACAATAACAACTTCAACTGTAAAGTTTATTATTGTTCTGTGTGTACCTGGGGCAAATCCAGTCTCCAGATTTCCATCCAGGTGGGATGCTTGCATCAGATCCATACTGATCAGAACCGATCATGTAGGCGCCATAATCACCAGGATAGACGGACTTAAATGCACCACATCTAAAGCAGTTGGGGCGGCTGGCATAATTGTGAGCTCCGCAGCTGACAGTGGTGCAGTACCAGTCTCCGGCCAACGCCTCCGTCTTGTTGTAACTGTAAGTTGAAGGGTCTGGGCCTCCATACTTGGGGTAAGCACAACGATGGCATGCTTCTCTTTTTTTGAAGTTGACGTTCTGGCAAACGTTGCATATCCAGTCTCCTGCTGACCAGCTCATTCCTTTCTATATATAAAAATCCCATTACTCATAAGTTGAGAGATAAACAAATAAAAAACTGCATAATAAAGTGACTAAAACTCAGTCATGTTCAAGCTTTGGAGTGCAAAACCAAAAAAAAAGGAAGAAGAAACTTGGACTTTAAATTTTGAATACCCTTTTTCCCCAAAAGCCTAGTATGGATATCTAACTTTTTTTTTTTTTCCCTCTAATACAGGCCAATAGAGACGGAGAAAGAAAAAAAAGAAATAGTTTGATTGTTGAAGTAGGATGCTCACCTTGATGAAGAAAAGAAGATGGATGGAATAATGAATGGTTCTGTTGGGTAATAGGTGAATTTGAATTGGTGGAAGAGAATTTAAATTTTGTTATAAGTGAGAGTTTATTGAATTTGTTTGCTGGGGGGACGAGGGGTTTATATAGTTGTCCAAGTTCTCTTAGCGTTGGGGTCCATTTTATGGTGGTTTCTCTTTTATTTCCTTGCCTTTTCACGGATGGTTTCCTCGTGATGCGATTCCCGAAGTTGAATTTTTTTCCTTCTTTTCTTTATCTTTAGATTAGG

mRNA sequence

GGCTCCAGAAAGCTCCAACCAAATTTCTTCTCTCTTATACGCGAAGTAATCACTACCGGTGCTAATAAGCCCTTTGCATATGTGACGACGGTGACTCTCGCTTCCACTGAGATTGAAGGTGTTCCGACAAAAGTCGAAAGCGGGAAAGTAAGGTGGGATGCTTGCATCAGATCCATACTGATCAGAACCGATCATGTAGGCGCCATAATCACCAGGATAGACGGACTTAAATGCACCACATCTAAAGCAGTTGGGGCGGCTGGCATAATTGTGAGCTCCGCAGCTGACAGTGGTGCAGTACCAGTCTCCGGCCAACGCCTCCGTCTTGTTGTAACTATTAGG

Coding sequence (CDS)

GGCTCCAGAAAGCTCCAACCAAATTTCTTCTCTCTTATACGCGAAGTAATCACTACCGGTGCTAATAAGCCCTTTGCATATGTGACGACGGTGACTCTCGCTTCCACTGAGATTGAAGGTGTTCCGACAAAAGTCGAAAGCGGGAAAGTAAGGTGGGATGCTTGCATCAGATCCATACTGATCAGAACCGATCATGTAGGCGCCATAATCACCAGGATAGACGGACTTAAATGCACCACATCTAAAGCAGTTGGGGCGGCTGGCATAATTGTGAGCTCCGCAGCTGACAGTGGTGCAGTACCAGTCTCCGGCCAACGCCTCCGTCTTGTTGTAACTATTAGG

Protein sequence

GSRKLQPNFFSLIREVITTGANKPFAYVTTVTLASTEIEGVPTKVESGKVRWDACIRSILIRTDHVGAIITRIDGLKCTTSKAVGAAGIIVSSAADSGAVPVSGQRLRLVVTIR

Homology

[Close]

BLAST of CcUC06G120650 vs. NCBI nr
Match: KAG6589863.1 (hypothetical protein SDJN03_15286, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.4 bits (311), Expect = 6.3e-25
Identity = 69/89 (77.53%), Postives = 72/89 (80.90%), Query Frame = 0


Query: 35  STEIEGVPTKVESGKV----------RWDACIRSILIRTDHVGAIITRIDGLKCTTSKAV 94
           STEIEGV TK+ESGKV          RWDACIRSILI T HVGAIITRIDGLKCTTSKAV
Sbjct: 300 STEIEGVATKIESGKVMANPVSRFPSRWDACIRSILIGTHHVGAIITRIDGLKCTTSKAV 359

Query: 95  GAAGIIVSSAADSGAVPVSGQRLRLVVTI 114
            AAG+IVSSAAD  AVPVSGQ LRLVVT+
Sbjct: 360 RAAGVIVSSAADGSAVPVSGQHLRLVVTV 388

[Close]

BLAST of CcUC06G120650 vs. NCBI nr
Match: KAG7023536.1 (hypothetical protein SDJN02_14562, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.1 bits (266), Expect = 1.0e-19
Identity = 69/130 (53.08%), Postives = 71/130 (54.62%), Query Frame = 0


Query: 35  STEIEGVPTKVESGKV-------------------------------------------- 94
           STEIEGV TK+ESGKV                                            
Sbjct: 82  STEIEGVATKIESGKVIDGVGSYVYFGSVLVQVQRDLLSKEFEILSLKVMQFIVVYVPRA 141

Query: 95  --------RWDACIRSILIRTDHVGAIITRIDGLKCTTSKAVGAAGIIVSSAADSGAVPV 113
                   RWDACIRSILI T HVGAIITRIDGLKCTTSKAV AAG+IVSSAAD  AVPV
Sbjct: 142 NPVSRFPSRWDACIRSILIGTHHVGAIITRIDGLKCTTSKAVRAAGVIVSSAADGSAVPV 201

The following BLAST results are available for this feature:

BLAST of CcUC06G120650 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589863.1	6.3e-25	77.53	hypothetical protein SDJN03_15286, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7023536.1	1.0e-19	53.08	hypothetical protein SDJN02_14562, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CcUC06G120650 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC06G120650 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC06G120650 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G120650.1	CcUC06G120650.1	mRNA