CcUC06G118360 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC06G118360
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr06: 12982898 .. 12986105 (+)
RNA-Seq ExpressionCcUC06G118360
SyntenyCcUC06G118360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATACATTCGTGCTAAATCAAGCATCGAAGGTGGCCTCCTCTTCAATGGCTTCCTTTTCATCCCAAACCCTAATCTGTTCCATTCCCTCCTTCTCATCTCCATAGAACCAACTGCAAATCAAGTAGTACAAGAAATTAGCCACACCCATCAAGCTCAACAACAAGTAGTAGTAATCATAATGCCCCTGGTTCAGATTGTTCGGAAGCCATCCCACTTTCCCATTCTTCGTCGTTGTCTTCTTCACCACGCTCACAATCAGAGCTGCCACCAAGCTCCCTGCCCCCATTCCCAGCGCGAACAGCGCTACTGCAATGCTCGCCATGCTCCTCGGCAGCTGCGAGTAGAAGAATTGAATCTGCCCTATCGCGTTCAACGCTTCAGCCAGTCCCGCCAGGCAGTGCTGTGGCACCAGCCACATCGCCGACATCTTCACGATTCCTCCCGGTACGCTGGCTAAACCTTCATGAATTGCTCTGTTTCTTCGTTTTCTCTCGATTTCTGCCGAAACTGCTGACGCCAAGCATGAGATTGCCAGTCCGATTCCCATTCTCTGCTTTAAAGTGAGTCCGTTTGATTTTTTGGTGAACTTCCCTAGTAGTGGGACGATGATTTGGTCGTATATCGCTACCCAGATTGTTAGGGTTAGGATTGTGAAGACGGCGAAGGAAGGTGCTGGGAATTGGAAGTGGGATGTTATGTGTCTATCCATTGTGTTTGCTTGGAGAGCGGAGAAGGTGAATTGATTAATGGTGGCACTGATTACAATTCCAGTGGACCAAATAGGAAGTAGTCTGATTAATGCTTTTAGTTCCTCTACTCGTTGAATCGTGCTTAATCTCCATGGGAATTTGGCCATTCCATTAGAATCCACGTCTGTTTCTTTGTTTCTTATTATGCAAGCCTTGTTTAGAAACCTTGAAAACAAGACAGAAGAATCAACCTCGATCATGTTACACACTCTAAAAGCGTCGTAAGCAACAATTACGAAACGTTTTGATTTGATTCTTAAAATACCTCAGTTTAGGTGTTGGGGTGACAAGCTTTGATCCTTTATGGTAAAACCATTTATCAGAATCTTGTGGGGGAAATTCCAAGGTCCTATTTCTCCAAGCGGCAACAGTTACCTGAGCCAAACTGCTAAGCAGACTCTTGTTTGCCATTAGTTTAACATACAATGAAGAGCCTAGAAAGAACATGGCCGCAGATAGCAGCATAAGTCCAACAGGAACTCCATAACCCACAACCCAACCGGCAACGTTTTGGAGATAGACCATGAAGACTACTGAAATGGTTACTGAAATTCCAACTGTAGCATAGTACCAGTTGAAGAAGCTCTGCATAGTCCTTTGGTTTTTGGGGTTGCCTGGCTTTTCTAGTTGATCTGCCCCAAACGCCAAGGAACATGGTCGAATTCCCCCAGCTCCAATTGCCATAAGAAGAAATGCAAAATACAGAAGCATTAGCTGGGCAGCGTTTGCTGAAACACAAGATTCCCCAGGTGATTTACAGTGTGGAGGCCTTGCTTTTGGAAATATGGCTGTTAACCATAAAACCACCATTCCCTGAAGTCCAAAAGAATGATCAAAGTTGAAGAAACTGCTGAAACAAACAGGTATTTAAGTTGGAAGTTAGGGAAATGAATCCATGCTTACAAGAAGTGCAACCACTGTGCCCATGGCAATGACCTTAAACCGACCCAAGTAAGCATCAGAGAGGAAAGCCCCACCAATGGGCAAAAAGTTTGTCAGTGCATTCCACAGAAACAAGACGATTGCTCCTTTAGCACTATCCAGGTGATACTCATTCATCAAGTAAAATATCATATTCGCATGAAGCCCAACATTTGAAATCTTCTCAAATATCTCGTTTGCTGCGGGTATAGAGTTTTTGTCAATGAACCGTATTACAAATGTATGCATCATAGCTTTTAAAACTTGGTGAAATTTACCTATAATAAAAGGCATAGTTCGAAGACCACCCTTTTTTCTTGCAACGTTTTCGGTGGTTTCCATTTTCTCTGAATTTTGCTTCTCCATTGGCTTGGTTTTGGGCACATGTTCATAGCAGGAGAACCTAGCTATAACGATCTAAAACTTTGTTCAATCCGCAAGTGGAAACAAAAATAAGCTGATTTGTTTTCCTTTTATCTTCTAATTTTAAAACGGTTATTCCAGACTTTGTATTTGTTTGGAATTTGGATTGCACTAGGTTGGTTGGGTTTTTTCAAAAGAAAATCTTAGGATGCTTTTTAAGTTTGTACTGCCCAACGATTCCATTCTGTTCTACTCCATGAGATTTCATGCTTTGTCATGTGATATAATAATATTTTTCTGCCAGAGCTTGAATCCTTCTGTTGTCAGCATTTATGTCATTTCGTTTAGCAGTTTCCAAACAAGCCTTCAAAAGTTTGTTTTTAGTAGAATACGAAGAACTGGTAAATTAGTGCTCACGATCGAGGGAGAATTTGCCCTGTCTCATTCACTCAAGAAGGTAATCTATACTTTTTGAATTATCTTTATTTTCTATAGTATGTTTGAAGGTGGATATGACAGTAAATTAGTAAAGAGCTGTAATGTGAACAAACTAAGGTCATGTTTACCAATTCGTGATAAAAATTGGTGTAATCGTAATGTCGATAGATTAAACGTACATGGCTACAATTGCAAATGTAATTGGATTGTTTTTTAATGTGTTTACCTAAAATTATGAATTTTGTCAAATTTACTATTACCAATTACTTTTACCTTTGAGGACCATCACTGTAATGGTAACAGTAACCGTAAATGTGTCAAAATTCATAGTTTTTTCTTTGAAACAGTAACCATAATGGTAACCATAACCGTAATGGTAAAAGTAGCGATACAACATAATTTTTGGGTACAATCGAATTGATTACTTTTCGCTCATCAATCGGTTTGTGTTTTTCGTTTACAGATTTGGTAGTGGACTCCAAGGGTCAATACGAATGCAAAACACAAGTAAACAATACCAAATGTAATCAAATGGGGCCTACTTTTTAAATTACCATTGATTTGTTACCATCGGACTAAGGTAAACGTGGCCTTAAGTTCGTTTGTAAATTACAATACTGATCAAACTATCCATTCAAATTAGTAACAAGTGGTAATACGAATGAACTAAGTTCGTTTTTAAAAATAGGTGTATTTAGTCTCTGATATATTAAATTGACTATTTTAGTTTAAAAG

mRNA sequence

ATATACATTCGTGCTAAATCAAGCATCGAAGGTGGCCTCCTCTTCAATGGCTTCCTTTTCATCCCAAACCCTAATCTGTTCCATTCCCTCCTTCTCATCTCCATAGAACCAACTGCAAATCAAGTAGTACAAGAAATTAGCCACACCCATCAAGCTCAACAACAAGTAGTAGTAATCATAATGCCCCTGGTTCAGATTGTTCGGAAGCCATCCCACTTTCCCATTCTTCGTCGTTGTCTTCTTCACCACGCTCACAATCAGAGCTGCCACCAAGCTCCCTGCCCCCATTCCCAGCGCGAACAGCGCTACTGCAATGCTCGCCATGCTCCTCGGCAGCTGCGAGTAGAAGAATTGAATCTGCCCTATCGCGTTCAACGCTTCAGCCAGTCCCGCCAGGCAGTGCTGTGGCACCAGCCACATCGCCGACATCTTCACGATTCCTCCCGTGGGACGATGATTTGGTCGTATATCGCTACCCAGATTGTTAGGGTTAGGATTGTGAAGACGGCGAAGGAAGGTGCTGGGAATTGGAAGTGGGATGTTATGTGTCTATCCATTGTGTTTGCTTGGAGAGCGGAGAAGAGCTTGAATCCTTCTGTTGTCAGCATTTATGTCATTTCGTTTAGCAGTTTCCAAACAAGCCTTCAAAAGTTTGTTTTTAGTAGAATACGAAGAACTGGTAAATTAGTGCTCACGATCGAGGGAGAATTTGCCCTGTCTCATTCACTCAAGAAGATTTGGTAGTGGACTCCAAGGGTCAATACGAATGCAAAACACAAGTAAACAATACCAAATGTAATCAAATGGGGCCTACTTTTTAAATTACCATTGATTTGTTACCATCGGACTAAGGTAAACGTGGCCTTAAGTTCGTTTGTAAATTACAATACTGATCAAACTATCCATTCAAATTAGTAACAAGTGGTAATACGAATGAACTAAGTTCGTTTTTAAAAATAGGTGTATTTAGTCTCTGATATATTAAATTGACTATTTTAGTTTAAAAG

Coding sequence (CDS)

ATATACATTCGTGCTAAATCAAGCATCGAAGGTGGCCTCCTCTTCAATGGCTTCCTTTTCATCCCAAACCCTAATCTGTTCCATTCCCTCCTTCTCATCTCCATAGAACCAACTGCAAATCAAGTAGTACAAGAAATTAGCCACACCCATCAAGCTCAACAACAAGTAGTAGTAATCATAATGCCCCTGGTTCAGATTGTTCGGAAGCCATCCCACTTTCCCATTCTTCGTCGTTGTCTTCTTCACCACGCTCACAATCAGAGCTGCCACCAAGCTCCCTGCCCCCATTCCCAGCGCGAACAGCGCTACTGCAATGCTCGCCATGCTCCTCGGCAGCTGCGAGTAGAAGAATTGAATCTGCCCTATCGCGTTCAACGCTTCAGCCAGTCCCGCCAGGCAGTGCTGTGGCACCAGCCACATCGCCGACATCTTCACGATTCCTCCCGTGGGACGATGATTTGGTCGTATATCGCTACCCAGATTGTTAGGGTTAGGATTGTGAAGACGGCGAAGGAAGGTGCTGGGAATTGGAAGTGGGATGTTATGTGTCTATCCATTGTGTTTGCTTGGAGAGCGGAGAAGAGCTTGAATCCTTCTGTTGTCAGCATTTATGTCATTTCGTTTAGCAGTTTCCAAACAAGCCTTCAAAAGTTTGTTTTTAGTAGAATACGAAGAACTGGTAAATTAGTGCTCACGATCGAGGGAGAATTTGCCCTGTCTCATTCACTCAAGAAGATTTGGTAG

Protein sequence

IYIRAKSSIEGGLLFNGFLFIPNPNLFHSLLLISIEPTANQVVQEISHTHQAQQQVVVIIMPLVQIVRKPSHFPILRRCLLHHAHNQSCHQAPCPHSQREQRYCNARHAPRQLRVEELNLPYRVQRFSQSRQAVLWHQPHRRHLHDSSRGTMIWSYIATQIVRVRIVKTAKEGAGNWKWDVMCLSIVFAWRAEKSLNPSVVSIYVISFSSFQTSLQKFVFSRIRRTGKLVLTIEGEFALSHSLKKIW
Homology
[Close]
BLAST of CcUC06G118360 vs. NCBI nr
Match: BAS74460.1 (Os01g0761600, partial [Oryza sativa Japonica Group])

HSP 1 Score: 56.6 bits (135), Expect = 3.5e-04
Identity = 37/108 (34.26%), Postives = 62/108 (57.41%), Query Frame = 0 

Query: 43  VQEISHTHQAQQQVVVIIMPLVQIVRKPS-HFPILRRCLLHHAHNQSCHQAPCPHSQREQ 102
           V E+ +  + + +VVV+++P V++  +P+          +    + +   A  PH++R+Q
Sbjct: 5   VGEVGNAQRGEDEVVVVVVPPVEVAGEPAVAAAAAPGAGVDGPDDGAPGHAAEPHAERQQ 64

Query: 103 RYCNARHAPRQLRVEELNLPYRVQRFSQSRQAVLWHQPHRRHLHDSSR 150
           R  +A H   +L V EL+LP +VQR  +SR AVL HQPH  H H ++R
Sbjct: 65  RDADAGHGLGELGVVELDLPDQVQRLGESRDAVLRHQPHGGHAHGAAR 112

[Close]
BLAST of CcUC06G118360 vs. ExPASy TrEMBL
Match: A0A0E0C812 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-11
Identity = 52/141 (36.88%), Postives = 76/141 (53.90%), Query Frame = 0 

Query: 3   IRAKSSIEGGLLFNGFLFIPNPNLFHSLLLISIEPTANQVVQEISHTHQAQQQVVVIIMP 62
           IR+ + + G   F   L    P   H L L+++ P A + V ++      ++ VVVI+  
Sbjct: 561 IRSLAVVPGRQTFRLSLTFVFP--LHVLSLLAVRPAAPEEVDKVDSAKAGEKPVVVIVAA 620

Query: 63  LVQIVRKPSHFPILRRCLLHHAHNQSCHQAPCPHSQREQRYCNARHAPRQLRVEELNLPY 122
            VQ++R+P+  P     L+ H  +Q+ HQAP P    EQR+  A HA  QL VEEL+ P 
Sbjct: 621 GVQVLRQPARPPSPPARLVDHLDDQAPHQAPRPQGHVEQRHAEAGHALGQLGVEELDHPD 680

Query: 123 RVQRFSQSRQAVLWHQPHRRH 144
             +R  + RQ VL H+P RRH
Sbjct: 681 HAERLGEPRQRVLRHEPERRH 699

[Close]
BLAST of CcUC06G118360 vs. ExPASy TrEMBL
Match: A0A0E0C811 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-11
Identity = 52/141 (36.88%), Postives = 76/141 (53.90%), Query Frame = 0 

Query: 3   IRAKSSIEGGLLFNGFLFIPNPNLFHSLLLISIEPTANQVVQEISHTHQAQQQVVVIIMP 62
           IR+ + + G   F   L    P   H L L+++ P A + V ++      ++ VVVI+  
Sbjct: 596 IRSLAVVPGRQTFRLSLTFVFP--LHVLSLLAVRPAAPEEVDKVDSAKAGEKPVVVIVAA 655

Query: 63  LVQIVRKPSHFPILRRCLLHHAHNQSCHQAPCPHSQREQRYCNARHAPRQLRVEELNLPY 122
            VQ++R+P+  P     L+ H  +Q+ HQAP P    EQR+  A HA  QL VEEL+ P 
Sbjct: 656 GVQVLRQPARPPSPPARLVDHLDDQAPHQAPRPQGHVEQRHAEAGHALGQLGVEELDHPD 715

Query: 123 RVQRFSQSRQAVLWHQPHRRH 144
             +R  + RQ VL H+P RRH
Sbjct: 716 HAERLGEPRQRVLRHEPERRH 734

[Close]
BLAST of CcUC06G118360 vs. ExPASy TrEMBL
Match: A0A0E0C810 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-11
Identity = 52/141 (36.88%), Postives = 76/141 (53.90%), Query Frame = 0 

Query: 3   IRAKSSIEGGLLFNGFLFIPNPNLFHSLLLISIEPTANQVVQEISHTHQAQQQVVVIIMP 62
           IR+ + + G   F   L    P   H L L+++ P A + V ++      ++ VVVI+  
Sbjct: 603 IRSLAVVPGRQTFRLSLTFVFP--LHVLSLLAVRPAAPEEVDKVDSAKAGEKPVVVIVAA 662

Query: 63  LVQIVRKPSHFPILRRCLLHHAHNQSCHQAPCPHSQREQRYCNARHAPRQLRVEELNLPY 122
            VQ++R+P+  P     L+ H  +Q+ HQAP P    EQR+  A HA  QL VEEL+ P 
Sbjct: 663 GVQVLRQPARPPSPPARLVDHLDDQAPHQAPRPQGHVEQRHAEAGHALGQLGVEELDHPD 722

Query: 123 RVQRFSQSRQAVLWHQPHRRH 144
             +R  + RQ VL H+P RRH
Sbjct: 723 HAERLGEPRQRVLRHEPERRH 741

[Close]
BLAST of CcUC06G118360 vs. ExPASy TrEMBL
Match: A0A0E0C815 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 9.3e-11
Identity = 46/116 (39.66%), Postives = 67/116 (57.76%), Query Frame = 0 

Query: 28  HSLLLISIEPTANQVVQEISHTHQAQQQVVVIIMPLVQIVRKPSHFPILRRCLLHHAHNQ 87
           H L L+++ P A + V ++      ++ VVVI+   VQ++R+P+  P     L+ H  +Q
Sbjct: 22  HVLSLLAVRPAAPEEVDKVDSAKAGEKPVVVIVAAGVQVLRQPARPPSPPARLVDHLDDQ 81

Query: 88  SCHQAPCPHSQREQRYCNARHAPRQLRVEELNLPYRVQRFSQSRQAVLWHQPHRRH 144
           + HQAP P    EQR+  A HA  QL VEEL+ P   +R  + RQ VL H+P RRH
Sbjct: 82  APHQAPRPQGHVEQRHAEAGHALGQLGVEELDHPDHAERLGEPRQRVLRHEPERRH 137

[Close]
BLAST of CcUC06G118360 vs. ExPASy TrEMBL
Match: A0A0P0V8E7 (Os01g0761600 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0761600 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.7e-04
Identity = 37/108 (34.26%), Postives = 62/108 (57.41%), Query Frame = 0 

Query: 43  VQEISHTHQAQQQVVVIIMPLVQIVRKPS-HFPILRRCLLHHAHNQSCHQAPCPHSQREQ 102
           V E+ +  + + +VVV+++P V++  +P+          +    + +   A  PH++R+Q
Sbjct: 5   VGEVGNAQRGEDEVVVVVVPPVEVAGEPAVAAAAAPGAGVDGPDDGAPGHAAEPHAERQQ 64

Query: 103 RYCNARHAPRQLRVEELNLPYRVQRFSQSRQAVLWHQPHRRHLHDSSR 150
           R  +A H   +L V EL+LP +VQR  +SR AVL HQPH  H H ++R
Sbjct: 65  RDADAGHGLGELGVVELDLPDQVQRLGESRDAVLRHQPHGGHAHGAAR 112

The following BLAST results are available for this feature:
BLAST of CcUC06G118360 vs. NCBI nr
Match NameE-valueIdentityDescription
BAS74460.13.5e-0434.26Os01g0761600, partial [Oryza sativa Japonica Group][more]
BLAST of CcUC06G118360 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC06G118360 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0E0C8124.2e-1136.88Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1[more]
A0A0E0C8114.2e-1136.88Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1[more]
A0A0E0C8104.2e-1136.88Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1[more]
A0A0E0C8159.3e-1139.66Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1[more]
A0A0P0V8E71.7e-0434.26Os01g0761600 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os01... [more]
BLAST of CcUC06G118360 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC06G118360.1CcUC06G118360.1mRNA