CcUC06G118150 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G118150
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	DNA helicase
Location	CicolChr06: 12414726 .. 12415037 (-)
RNA-Seq Expression	CcUC06G118150
Synteny	CcUC06G118150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAGCAGGGGAGGAGAACGATAAGGTTGGGGGATTGGAGAGGCGGAAATAAGCAGCCCAATATGTGGAAGGCTTTGTGGAGGAAGTTGAGAAGAGAAAAGAGGAAGATTTTAGAGCTGTCTCAAACAACGACCTCCTTTTATTCTTCAGGCCCCAAATTGATTCCTTACGATCCTCTCTCTTATTCTCAGAATTTCGATCAATCCACCGCCGCTGAAGAACTCGATAATCTTTCCCGCTCCTTCTCCGCCCGCTTCGCTCTCGCCGATGTTGCTTCCACAATCTTTCTTCACCAACAACATCTTTAA

mRNA sequence

ATGGGAAAGCAGGGGAGGAGAACGATAAGGTTGGGGGATTGGAGAGGCGGAAATAAGCAGCCCAATATGTGGAAGGCTTTGTGGAGGAAGTTGAGAAGAGAAAAGAGGAAGATTTTAGAGCTGTCTCAAACAACGACCTCCTTTTATTCTTCAGGCCCCAAATTGATTCCTTACGATCCTCTCTCTTATTCTCAGAATTTCGATCAATCCACCGCCGCTGAAGAACTCGATAATCTTTCCCGCTCCTTCTCCGCCCGCTTCGCTCTCGCCGATGTTGCTTCCACAATCTTTCTTCACCAACAACATCTTTAA

Coding sequence (CDS)

ATGGGAAAGCAGGGGAGGAGAACGATAAGGTTGGGGGATTGGAGAGGCGGAAATAAGCAGCCCAATATGTGGAAGGCTTTGTGGAGGAAGTTGAGAAGAGAAAAGAGGAAGATTTTAGAGCTGTCTCAAACAACGACCTCCTTTTATTCTTCAGGCCCCAAATTGATTCCTTACGATCCTCTCTCTTATTCTCAGAATTTCGATCAATCCACCGCCGCTGAAGAACTCGATAATCTTTCCCGCTCCTTCTCCGCCCGCTTCGCTCTCGCCGATGTTGCTTCCACAATCTTTCTTCACCAACAACATCTTTAA

Protein sequence

MGKQGRRTIRLGDWRGGNKQPNMWKALWRKLRREKRKILELSQTTTSFYSSGPKLIPYDPLSYSQNFDQSTAAEELDNLSRSFSARFALADVASTIFLHQQHL

Homology

[Close]

BLAST of CcUC06G118150 vs. NCBI nr
Match: KAE8653121.1 (hypothetical protein Csa_019717, partial [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 2.6e-38
Identity = 89/104 (85.58%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 1   MGKQGRRTIRLGDWRGGNK-QPNMWKALWRKLRREKRKILELSQTTTSFYSSGPKLIPYD 60
           M KQGR TIRLG WRG NK QPNMWK LWRKLRREKRKILE S TTT FYSSGPKLIPYD
Sbjct: 9   MRKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILESSNTTT-FYSSGPKLIPYD 68

Query: 61  PLSYSQNFDQSTAAEELDNLSRSFSARFALADVASTIFLHQQHL 104
           P SYSQNFDQ TA EELDNLSRSFSARFALADVAS  FLH+QHL
Sbjct: 69  PFSYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQHL 111

[Close]

BLAST of CcUC06G118150 vs. NCBI nr
Match: KAG6587950.1 (hypothetical protein SDJN03_16515, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.5 bits (280), Expect = 2.2e-21
Identity = 66/99 (66.67%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 3   KQGRRTIRLGDWRGGNKQPNMWKALWRKLRREKRKILELSQTTTSFYSSGPKLIPYDPLS 62
           K  ++TIRLG WR G  QPN+WK LWRKLRREKR     ++TTT  YSSG  LIPYDP S
Sbjct: 155 KSSKQTIRLGRWRSG-YQPNLWKVLWRKLRREKR-----NKTTT--YSSG-NLIPYDPFS 214

Query: 63  YSQNFDQSTAAEELDNLSRSFSARFALADVASTIFLHQQ 102
           YS NFDQ  AAEE D L RSFSARFALAD AS  FL  Q
Sbjct: 215 YSHNFDQGNAAEEPDILCRSFSARFALADAASAFFLDNQ 244

[Close]

BLAST of CcUC06G118150 vs. NCBI nr
Match: KAG7021839.1 (hypothetical protein SDJN02_15567, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-20
Identity = 64/99 (64.65%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 3   KQGRRTIRLGDWRGGNKQPNMWKALWRKLRREKRKILELSQTTTSFYSSGPKLIPYDPLS 62
           K  ++TIRLG WR G  QPN+WK LWRKLRR+KR     ++TTT  YSSG  LIPYDP S
Sbjct: 155 KSSKQTIRLGRWRSG-YQPNLWKLLWRKLRRQKR-----NKTTT--YSSG-NLIPYDPFS 214

Query: 63  YSQNFDQSTAAEELDNLSRSFSARFALADVASTIFLHQQ 102
           YS NFDQ  AAE+ D L RSFSARFALAD AS  FL  Q
Sbjct: 215 YSHNFDQGNAAEDPDILCRSFSARFALADAASAFFLDNQ 244

[Close]

BLAST of CcUC06G118150 vs. NCBI nr
Match: TKY44653.1 (hypothetical protein E2542_SST30930 [Spatholobus suberectus])

HSP 1 Score: 74.3 bits (181), Expect = 6.7e-10
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 24 WKALWRKLRREKRKILELSQTTTSFYSSGPKLIPYDPLSYSQNFDQSTAAEELDNLSRSF 83
          WK LW KL++EK+K+ E         S+ P  +PYDP +YSQNFDQ TA +E DNLSRSF
Sbjct: 37 WKVLWMKLKKEKKKLFE---------SASPLQVPYDPYTYSQNFDQGTAKDEPDNLSRSF 92

Query: 84 SARFA 89
          S RFA
Sbjct: 97 SVRFA 92

[Close]

BLAST of CcUC06G118150 vs. NCBI nr
Match: RDX89602.1 (hypothetical protein CR513_28657, partial [Mucuna pruriens])

HSP 1 Score: 73.9 bits (180), Expect = 8.8e-10
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 24  WKALWRKLRREKRKILELSQTTTSFYSSGPKLIPYDPLSYSQNFDQSTAAEELDNLSRSF 83
           WK LW KL++EK+K+ E         S+ P  +PYDP +YSQNFDQ TA +E DNLSRSF
Sbjct: 45  WKMLWMKLKKEKKKLFE---------SASPVQVPYDPYTYSQNFDQGTAKDEPDNLSRSF 100

Query: 84  SARFA 89
           S RFA
Sbjct: 105 SVRFA 100

[Close]

BLAST of CcUC06G118150 vs. ExPASy TrEMBL
Match: A0A0A0LWX3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G370510 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.3e-38
Identity = 89/104 (85.58%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 1   MGKQGRRTIRLGDWRGGNK-QPNMWKALWRKLRREKRKILELSQTTTSFYSSGPKLIPYD 60
           M KQGR TIRLG WRG NK QPNMWK LWRKLRREKRKILE S TTT FYSSGPKLIPYD
Sbjct: 4   MRKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILESSNTTT-FYSSGPKLIPYD 63

Query: 61  PLSYSQNFDQSTAAEELDNLSRSFSARFALADVASTIFLHQQHL 104
           P SYSQNFDQ TA EELDNLSRSFSARFALADVAS  FLH+QHL
Sbjct: 64  PFSYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQHL 106

[Close]

BLAST of CcUC06G118150 vs. ExPASy TrEMBL
Match: A0A371GGA5 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_28657 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.3e-10
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 24  WKALWRKLRREKRKILELSQTTTSFYSSGPKLIPYDPLSYSQNFDQSTAAEELDNLSRSF 83
           WK LW KL++EK+K+ E         S+ P  +PYDP +YSQNFDQ TA +E DNLSRSF
Sbjct: 45  WKMLWMKLKKEKKKLFE---------SASPVQVPYDPYTYSQNFDQGTAKDEPDNLSRSF 100

Query: 84  SARFA 89
           S RFA
Sbjct: 105 SVRFA 100

[Close]

BLAST of CcUC06G118150 vs. ExPASy TrEMBL
Match: A0A151S3I6 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_028966 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.6e-10
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 24 WKALWRKLRREKRKILELSQTTTSFYSSGPKLIPYDPLSYSQNFDQSTAAEELDNLSRSF 83
          WK LW KL++EK+K+ E         S+ P  +PYDP SYSQNFDQ TA +E DNLSRSF
Sbjct: 35 WKVLWMKLKKEKKKLFE---------SASPLQVPYDPYSYSQNFDQGTAKDEPDNLSRSF 90

Query: 84 SARFA 89
            RFA
Sbjct: 95 CVRFA 90

[Close]

BLAST of CcUC06G118150 vs. ExPASy TrEMBL
Match: I1KIS1 (Uncharacterized protein OS=Glycine max OX=3847 GN=102669499 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 24 WKALWRKLRREKRKILELSQTTTSFYSSGPKLIPYDPLSYSQNFDQSTAAEELDNLSRSF 83
          WK LW KL++EK+K+ E         +S P  +PYDP +YSQNFDQ TA +E DN SRSF
Sbjct: 37 WKVLWMKLKKEKKKLFE--------SASSPLQVPYDPYTYSQNFDQGTAKDEPDNFSRSF 93

Query: 84 SARFA 89
          S RFA
Sbjct: 97 SVRFA 93

[Close]

BLAST of CcUC06G118150 vs. ExPASy TrEMBL
Match: A0A1S2YE01 (uncharacterized protein LOC101493656 OS=Cicer arietinum OX=3827 GN=LOC101493656 PE=4 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 2.1e-09
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 24  WKALWRKLRREKRKILELSQTTTSFYSSGPKLIPYDPLSYSQNFDQSTAAEELDNLSRSF 83
           WK LW KL++EK+K+ E + +T        + +PYDP +YSQNFDQ T  +E DNLSRSF
Sbjct: 62  WKMLWMKLKKEKKKLFECASSTL-------QQVPYDPYTYSQNFDQGTVFDEPDNLSRSF 119

Query: 84  SARFA 89
           S RFA
Sbjct: 122 SVRFA 119

The following BLAST results are available for this feature:

BLAST of CcUC06G118150 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653121.1	2.6e-38	85.58	hypothetical protein Csa_019717, partial [Cucumis sativus]	[more]
KAG6587950.1	2.2e-21	66.67	hypothetical protein SDJN03_16515, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7021839.1	1.4e-20	64.65	hypothetical protein SDJN02_15567, partial [Cucurbita argyrosperma subsp. argyro...	[more]
TKY44653.1	6.7e-10	56.92	hypothetical protein E2542_SST30930 [Spatholobus suberectus]	[more]
RDX89602.1	8.8e-10	56.92	hypothetical protein CR513_28657, partial [Mucuna pruriens]	[more]

BLAST of CcUC06G118150 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC06G118150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWX3	1.3e-38	85.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G370510 PE=4 SV=1	[more]
A0A371GGA5	4.3e-10	56.92	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_28657 P...	[more]
A0A151S3I6	5.6e-10	56.92	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_028966 PE=4 SV=1	[more]
I1KIS1	1.2e-09	55.38	Uncharacterized protein OS=Glycine max OX=3847 GN=102669499 PE=4 SV=1	[more]
A0A1S2YE01	2.1e-09	53.85	uncharacterized protein LOC101493656 OS=Cicer arietinum OX=3827 GN=LOC101493656 ...	[more]

BLAST of CcUC06G118150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168:SF44	EXPRESSED PROTEIN	coord: 19..102
None	No IPR available	PANTHER	PTHR33168	STRESS INDUCED PROTEIN-RELATED	coord: 19..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G118150.1	CcUC06G118150.1	mRNA