CcUC06G117870 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G117870
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Prefoldin chaperone subunit family protein
Location	CicolChr06: 11245489 .. 11248176 (+)
RNA-Seq Expression	CcUC06G117870
Synteny	CcUC06G117870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCCACACAATGCGCTCTCTTCTCTTCACTCTTTCAAGATCACCCAAATCCCCAAACCAAACAAACCAATCCATTCCCAAAATGGCCGCCGACGCTGGGCTTACCACCGCGGCGTCCCCGTCGATACCCATCGAAGAACACAAACTGGAAATTACAAAACAGATGAGACGTCATGAGGTCGCCATTGCAGAGCTCAATCATCTCTCCTCTTCCAGAGTAACCCCCTTCCCCGCTCTTTCTCTGCTTCTTTGTCTTCTTTCTCTAATTTGAACTAGATGTAGAACGCTGTACCGGCATTCTGTTTGAAAATTTTGTTCCAACTCTGTCTATTTTCCTTTTTCTGCCGAATATTTTGCTCGGACCAACTTTTCTATCGTATACGCTATTAACTAGGGTGCAGTCGAACTGCAATCTTCATTACATGTTAATCTAGGCTCTAAATCTTCCAATAATTGCTCAACTTTTTCTGGCTGAACTCATCTTTTGAAACACTAGACGAACTTCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAGCTTTCCTCTAGACTCTTCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTGCCCCTTTAATGGATATAAACTGCTTGATTTATTACTCCTATTTTTTAGAAGAATGTTAGTTTGGTAGTGACTTTTGATTGCTCTATTTTTCATTTTATTGAGATCTAGTAAAGGATTATAATTTCTCAATTTTATGAAAATATATTTGAAAACATTCGTGTGGATGAATTGATATTGTTACAAGAACATGAACAGATATTGATATCAAATTCTTCCATTTCTGATAATATTAGTGGAAGCATTAATATGTGGATGAACAACACATAATATCACCTTTAGTAACTAGGTCAGTTTGTGATTATGATCATGGTTTGATTTAGTTGGATTGGAGTTGTAGTTTGGGGTCTCCTTTTTTTATGCCCTTGTATATTCTTTTATTCTGTTCAATGAAACCTTGATTTCGTACTTTAAGGGGGTGAAAAAGACATGAAGAAGATTAAAAGATGAACAGCCTCTCTCTGATACACATTCTTAATGTTGTTGTAAATTGCAGGCTGTCTTTCAGAAAAACGGAAACATATTTTTTCGCACAACTATTCAAAAAGCAACAACTTCGGAACAGAGTAAGAATATTGCTTTAACAAACTTAACTTATGTATACACCCCCATGTTTTATGTCTTCCCTCTCAATCCTATCCAATTTATATCCTCATTTTAGACATTTCCTAAAGAAGGTTTTGAATATCCATATGAGGAAGAAATTTCTTTTTTGAAATATATTATGGAAGTGTGATTTCAGTATTGAATAAATATCGAGAAATGTTAGATATATAGCAAAATCTCAAAGGGGTTTAGATGAAACTTTTCAAAATCCATGGACACAAAGTAGTAACTAGGAAAATGTTGCCTTTTATCTGAGAGTTCAAATCATTTTTGAGTTTCTTGACACGTGTATGATATTTTTTCTGTTTGACCTTGGTTTCTCCTTCGACATTTATGAAATTCAAGACTTATTATTGTCAATATCTACAATTAACTACTTGATCCCACCTTAACCTTTTTGATTGGTTGGTTTCTCTTTTCAGAAAAACTTGATGCGGCTAGAGCAAAGCTTGAAAGACTGAATTCTTGATTCGGACTCTCAATGAGGAAATATTCTAATCTAAACGATTTTCTAAGTGCTTCAAAAAGTGTTTTCCGTAAGTACTTTAAAAGTCATTGGTCTTGAATTTCTCGCTTTTTTATTTTACTCAAGAGTAAAGTCTTGATCTAGAGGTTCAAAATTCTGCTTACAAAATCTATTTGCTAAAACTTCTTTCCCTGAATATTTTGTCATTTCCTCAATGAAGGAAAGAATGTGAAAGGTGAATAGCATCTTGTTTTAATATAATTGATCATTCATTTTGCAGACAATGATGCTTCATCATGTAAGTTTGAGCTGATATGATACGAATTTTCAAATGATAGTTTGATATTTAGTGTAGGGTCCAGTGGGTTTGAACTGGCTGCTCAGTCTAGAAATCATACAAGGCTAAGCTCGTTTTATGCCTTAGCCTACACACTAATTTTTGTACATTTGAAGTGAGAATTCATCTAATACTACAATAAATTCTCCGATGGCCAACTAGATTGATGTTCAAATTCCGACTTTCAGGCTAGGTCGGGTTGGCCTTCTGATAACATTGAGGTAGGTACATTTGTTGTTTAATTTTGTAGGTACAAATGTAAATTTGAAATTTTAACAAATGGCTTAAGGTGAATGGGTTCCATCTGGCCTACTTTGGATATTTATTTTTTTTTATTTTTTTATTTTTTTTGAAACTATGTTGTAAAGTAACAACTTGCTCAGTCAGTGGAT

mRNA sequence

ATGCCCCACACAATGCGCTCTCTTCTCTTCACTCTTTCAAGATCACCCAAATCCCCAAACCAAACAAACCAATCCATTCCCAAAATGGCCGCCGACGCTGGGCTTACCACCGCGGCGTCCCCGTCGATACCCATCGAAGAACACAAACTGGAAATTACAAAACAGATGAGACGTCATGAGGTCGCCATTGCAGAGCTCAATCATCTCTCCTCTTCCAGAGCTGTCTTTCAGAAAAACGGAAACATATTTTTTCGCACAACTATTCAAAAAGCAACAACTTCGGAACAGAACAATGATGCTTCATCATGTAAGTTTGAGCTGATATGATACGAATTTTCAAATGATAGTTTGATATTTAGTGTAGGGTCCAGTGGGTTTGAACTGGCTGCTCAGTCTAGAAATCATACAAGGCTAAGCTCGTTTTATGCCTTAGCCTACACACTAATTTTTGTACATTTGAAGTGAGAATTCATCTAATACTACAATAAATTCTCCGATGGCCAACTAGATTGATGTTCAAATTCCGACTTTCAGGCTAGGTCGGGTTGGCCTTCTGATAACATTGAGGTAGGTACATTTGTTGTTTAATTTTGTAGGTACAAATGTAAATTTGAAATTTTAACAAATGGCTTAAGGTGAATGGGTTCCATCTGGCCTACTTTGGATATTTATTTTTTTTTATTTTTTTATTTTTTTTGAAACTATGTTGTAAAGTAACAACTTGCTCAGTCAGTGGAT

Coding sequence (CDS)

ATGCCCCACACAATGCGCTCTCTTCTCTTCACTCTTTCAAGATCACCCAAATCCCCAAACCAAACAAACCAATCCATTCCCAAAATGGCCGCCGACGCTGGGCTTACCACCGCGGCGTCCCCGTCGATACCCATCGAAGAACACAAACTGGAAATTACAAAACAGATGAGACGTCATGAGGTCGCCATTGCAGAGCTCAATCATCTCTCCTCTTCCAGAGCTGTCTTTCAGAAAAACGGAAACATATTTTTTCGCACAACTATTCAAAAAGCAACAACTTCGGAACAGAACAATGATGCTTCATCATGTAAGTTTGAGCTGATATGA

Protein sequence

MPHTMRSLLFTLSRSPKSPNQTNQSIPKMAADAGLTTAASPSIPIEEHKLEITKQMRRHEVAIAELNHLSSSRAVFQKNGNIFFRTTIQKATTSEQNNDASSCKFELI

Homology

[Close]

BLAST of CcUC06G117870 vs. NCBI nr
Match: XP_011649062.1 (uncharacterized protein LOC105434577 [Cucumis sativus] >KGN61409.1 hypothetical protein Csa_006282 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 6.2e-22
Identity = 62/79 (78.48%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 29  MAADAGLTTAASPSIPIEEHKLEITKQMRRHEVAIAELNHLSSSRAVFQKNGNIFFRTTI 88
           MAAD GL+TAASPSI +EE KLEITKQMR  EVAIAELNHLSS+RAVFQKNGN+FFRTT+
Sbjct: 1   MAADGGLSTAASPSITMEEQKLEITKQMRSLEVAIAELNHLSSTRAVFQKNGNLFFRTTV 60

Query: 89  QKATTSEQNN-DASSCKFE 107
           QKATTSEQ   DA+  K E
Sbjct: 61  QKATTSEQKKLDAARAKLE 79

[Close]

BLAST of CcUC06G117870 vs. NCBI nr
Match: XP_038875459.1 (uncharacterized protein LOC120067907 [Benincasa hispida])

HSP 1 Score: 112.1 bits (279), Expect = 3.1e-21
Identity = 60/79 (75.95%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 29  MAADAGLTTAASPSIPIEEHKLEITKQMRRHEVAIAELNHLSSSRAVFQKNGNIFFRTTI 88
           M A +G +TAASPSI IEE KLEITKQ+R +EVAIAELNHLSSSRA+FQKNGNIFFRTT+
Sbjct: 1   MDAGSGFSTAASPSITIEEQKLEITKQIRSYEVAIAELNHLSSSRAIFQKNGNIFFRTTV 60

Query: 89  QKATTSEQNN-DASSCKFE 107
           QKATTSEQ   DA++ K E
Sbjct: 61  QKATTSEQKKLDAATAKLE 79

[Close]

BLAST of CcUC06G117870 vs. NCBI nr
Match: XP_008457178.1 (PREDICTED: uncharacterized protein LOC103496917 [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 9.8e-20
Identity = 58/79 (73.42%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 29  MAADAGLTTAASPSIPIEEHKLEITKQMRRHEVAIAELNHLSSSRAVFQKNGNIFFRTTI 88
           MAAD G +TAA PSI  EE KLEITKQMR  EVAIAELNHLSS+RAV+QKNGN+FFRTT+
Sbjct: 1   MAADGGFSTAAFPSITKEEQKLEITKQMRSLEVAIAELNHLSSTRAVYQKNGNLFFRTTV 60

Query: 89  QKATTSEQNN-DASSCKFE 107
           QKATTSEQ   DA+  + E
Sbjct: 61  QKATTSEQKKLDAAKARLE 79

[Close]

BLAST of CcUC06G117870 vs. NCBI nr
Match: KAG7026105.1 (Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.1 bits (261), Expect = 3.7e-19
Identity = 59/83 (71.08%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 26  IPKMAADAGLTTAAS-PSIPIEEHKLEITKQMRRHEVAIAELNHLSSSRAVFQKNGNIFF 85
           I KMA   G  TAA+ PS  IEE KLEITK+MR HEV+IAELNHLSS+RAVFQKNGNIFF
Sbjct: 620 IEKMATGGGFGTAAAFPSTTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGNIFF 679

Query: 86  RTTIQKATTSEQNN-DASSCKFE 107
           RTT+QKATTSEQ   DA+  K +
Sbjct: 680 RTTVQKATTSEQKKLDAARAKLQ 702

[Close]

BLAST of CcUC06G117870 vs. NCBI nr
Match: XP_022964526.1 (uncharacterized protein LOC111464527 [Cucurbita moschata])

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-18
Identity = 58/86 (67.44%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 23  NQSIPKMAADAGLTTAAS-PSIPIEEHKLEITKQMRRHEVAIAELNHLSSSRAVFQKNGN 82
           + +I KM    G  TAA+ PS  IEE KLEITK+MR HEV+IAELNHLSS+RAVFQKNGN
Sbjct: 18  SDTIEKMPTGGGFGTAAAFPSRTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGN 77

Query: 83  IFFRTTIQKATTSEQNN-DASSCKFE 107
           IFFRTT+QKATTSEQ   DA+  K +
Sbjct: 78  IFFRTTVQKATTSEQKKLDAARAKLQ 103

[Close]

BLAST of CcUC06G117870 vs. ExPASy TrEMBL
Match: A0A0A0LK18 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G118320 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.0e-22
Identity = 62/79 (78.48%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 29  MAADAGLTTAASPSIPIEEHKLEITKQMRRHEVAIAELNHLSSSRAVFQKNGNIFFRTTI 88
           MAAD GL+TAASPSI +EE KLEITKQMR  EVAIAELNHLSS+RAVFQKNGN+FFRTT+
Sbjct: 1   MAADGGLSTAASPSITMEEQKLEITKQMRSLEVAIAELNHLSSTRAVFQKNGNLFFRTTV 60

Query: 89  QKATTSEQNN-DASSCKFE 107
           QKATTSEQ   DA+  K E
Sbjct: 61  QKATTSEQKKLDAARAKLE 79

[Close]

BLAST of CcUC06G117870 vs. ExPASy TrEMBL
Match: A0A1S3C672 (uncharacterized protein LOC103496917 OS=Cucumis melo OX=3656 GN=LOC103496917 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.8e-20
Identity = 58/79 (73.42%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 29  MAADAGLTTAASPSIPIEEHKLEITKQMRRHEVAIAELNHLSSSRAVFQKNGNIFFRTTI 88
           MAAD G +TAA PSI  EE KLEITKQMR  EVAIAELNHLSS+RAV+QKNGN+FFRTT+
Sbjct: 1   MAADGGFSTAAFPSITKEEQKLEITKQMRSLEVAIAELNHLSSTRAVYQKNGNLFFRTTV 60

Query: 89  QKATTSEQNN-DASSCKFE 107
           QKATTSEQ   DA+  + E
Sbjct: 61  QKATTSEQKKLDAAKARLE 79

[Close]

BLAST of CcUC06G117870 vs. ExPASy TrEMBL
Match: A0A6J1HJ49 (uncharacterized protein LOC111464527 OS=Cucurbita moschata OX=3662 GN=LOC111464527 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.9e-19
Identity = 58/86 (67.44%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 23  NQSIPKMAADAGLTTAAS-PSIPIEEHKLEITKQMRRHEVAIAELNHLSSSRAVFQKNGN 82
           + +I KM    G  TAA+ PS  IEE KLEITK+MR HEV+IAELNHLSS+RAVFQKNGN
Sbjct: 18  SDTIEKMPTGGGFGTAAAFPSRTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGN 77

Query: 83  IFFRTTIQKATTSEQNN-DASSCKFE 107
           IFFRTT+QKATTSEQ   DA+  K +
Sbjct: 78  IFFRTTVQKATTSEQKKLDAARAKLQ 103

[Close]

BLAST of CcUC06G117870 vs. ExPASy TrEMBL
Match: A0A6J1KIB7 (uncharacterized protein LOC111494702 OS=Cucurbita maxima OX=3661 GN=LOC111494702 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 9.9e-18
Identity = 56/80 (70.00%), Postives = 63/80 (78.75%), Query Frame = 0


Query: 29  MAADAGLTTAA-SPSIPIEEHKLEITKQMRRHEVAIAELNHLSSSRAVFQKNGNIFFRTT 88
           MA   G  TA+  PS  IEE KLEITK+MR HEV+IAELNHLSS+RAVFQKNGNIFFRTT
Sbjct: 1   MATGGGFGTASVFPSRTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGNIFFRTT 60

Query: 89  IQKATTSEQNN-DASSCKFE 107
           +QKATTSEQ   DA+  K +
Sbjct: 61  VQKATTSEQKKLDAARAKLQ 80

[Close]

BLAST of CcUC06G117870 vs. ExPASy TrEMBL
Match: A0A6J1DN63 (uncharacterized protein LOC111022769 OS=Momordica charantia OX=3673 GN=LOC111022769 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.4e-17
Identity = 56/82 (68.29%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 29  MAADAGLTT---AASPSIPIEEHKLEITKQMRRHEVAIAELNHLSSSRAVFQKNGNIFFR 88
           MA   G  T    ASPS  IEE KLEI K MR HEVAIAELNHLSS RAVFQKNGN+FFR
Sbjct: 1   MAGGGGFVTVAATASPSRTIEEQKLEIAKAMRSHEVAIAELNHLSSFRAVFQKNGNLFFR 60

Query: 89  TTIQKATTSEQNN-DASSCKFE 107
           TT+QKATTSEQ   D +  K E
Sbjct: 61  TTVQKATTSEQKKLDMARAKLE 82

[Close]

BLAST of CcUC06G117870 vs. TAIR 10
Match: AT1G49245.1 (Prefoldin chaperone subunit family protein )

HSP 1 Score: 53.9 bits (128), Expect = 9.2e-08
Identity = 24/50 (48.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 47 EHKLEITKQMRRHEVAIAELNHLSSSRAVFQKNGNIFFRTTIQKATTSEQ 97
          + + E+ K+++R EV++ EL+ LSSSR+++QKNGN+FF T+ +KA  S Q
Sbjct: 8  DREFELEKEIKRQEVSLDELSSLSSSRSIYQKNGNLFFLTSAEKAKISAQ 57

The following BLAST results are available for this feature:

BLAST of CcUC06G117870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649062.1	6.2e-22	78.48	uncharacterized protein LOC105434577 [Cucumis sativus] >KGN61409.1 hypothetical ...	[more]
XP_038875459.1	3.1e-21	75.95	uncharacterized protein LOC120067907 [Benincasa hispida]	[more]
XP_008457178.1	9.8e-20	73.42	PREDICTED: uncharacterized protein LOC103496917 [Cucumis melo]	[more]
KAG7026105.1	3.7e-19	71.08	Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_022964526.1	1.4e-18	67.44	uncharacterized protein LOC111464527 [Cucurbita moschata]	[more]

BLAST of CcUC06G117870 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC06G117870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LK18	3.0e-22	78.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G118320 PE=3 SV=1	[more]
A0A1S3C672	4.8e-20	73.42	uncharacterized protein LOC103496917 OS=Cucumis melo OX=3656 GN=LOC103496917 PE=...	[more]
A0A6J1HJ49	6.9e-19	67.44	uncharacterized protein LOC111464527 OS=Cucurbita moschata OX=3662 GN=LOC1114645...	[more]
A0A6J1KIB7	9.9e-18	70.00	uncharacterized protein LOC111494702 OS=Cucurbita maxima OX=3661 GN=LOC111494702...	[more]
A0A6J1DN63	6.4e-17	68.29	uncharacterized protein LOC111022769 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of CcUC06G117870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49245.1	9.2e-08	48.00	Prefoldin chaperone subunit family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009053	Prefoldin	GENE3D	1.10.287.370		coord: 44..102 e-value: 2.3E-5 score: 26.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..26
None	No IPR available	SUPERFAMILY	46579	Prefoldin	coord: 51..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G117870.1	CcUC06G117870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
cellular_component	GO:0016272	prefoldin complex
molecular_function	GO:0051082	unfolded protein binding