CcUC06G115410 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC06G115410
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC113729324
LocationCicolChr06: 6797258 .. 6799113 (-)
RNA-Seq ExpressionCcUC06G115410
SyntenyCcUC06G115410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCACGTGCGACTGAAGGAGGGAAAACATAGGGTAGTTGGATGTTATCTACTGAAGACCTTTTTAATAAAGGTCCTCCGTTATTCATGATGCCACGTGCCGGTCAAGCAGTGGATGGTCTTTTCATTGCACCACTCCCCTTTTGTTGTTTTTCAACTTTGGAATTTCTCATTTTACTTTTAAGTCCTCACTTTTGAATACATTTTAATAATTATAATAAAATATTTTAGTGTTTTTTTTTTTAAATGGTTTTGAAAATATATGATTAGTCAGGTGATATTTATTTTGATTGGGAAAAATGTGAATTTTCTTTTGCTAAAGTACAAAAAGTAGATTTGAATTTACTTATAATGTTTTTAATTCATGAAGAAAATTTTCATTTTATACATGAGGAATTCAATAATTAAGTTTTGTTGTTCGAACGTTAAAAAGAAATTTACTTGCATTATATGTTTAAGTCATTGGTCATTTATATGTTTAAGGCATTGCTTATTTTTATTGTATTACATTAAATTTTGTTTTTAGGGGAAAGATCTAAAATCCTAGATAATAGATAATATCGTTTTTAGATAGAATAATTGTCATATTATTTTATTAATATAAATTATTACTTCTATTTGTAGTAGGAAAAAACTTTTGTTTTGAAAAATTATTATAAATAGAAAAAATATCAAACTATTTACAAATATTTTGACTAATTTGCTATATTTGGAAATAATCTTTTTAGTAAATACTAAAATTTTAACCACACACTTCTCGATCATTATCACATGCTTTATACCGGCTAAGGTTCCATTTTTATATTAGGAAAAAAACTAATACTCTTAAATTAATTATTTATAAAAAATCGAGTCAATTTGACTAATTAAACCAGGACTCAAGTTCCTGATTGAGGAATGAGATTTGCTTTATAAAGGCTTCCCCTAATTTAGATTACTTCAGAATTTGGATTGATTCTCTCCTATGTGATTTTGGAGTTGGAGTTGTTCTAATGGCCCTGTGGTTGGTGCTGTTTCGGGCTCTCCCACCCCTTTCCCGTTTGTGTACTTCGCCCGAAGGATGTTGGGAGGCCGTAAATTCATCTCTAAAGGTCTTTATATGAGCCTTCTAGAAATCGAAGCCATTCTAGAGGGGCTGAGAGTGCTTGTTGGGGCGTGGTCGGGTCCAATCACCTGTTGTTGGAGGTGAAGTTTGATGCTCTGGAGGTCATCAGTTTGGGACCATGACGGGTGTGCTATTTTGGGAGGCTGTAAATTCATCTCTAAAGGTCTTTATATGAGCCTTCTAGAAGTCGAAGCCATTCTAGAAGGGCTGAGAGTGCTTGTTGGGGCGTGGTCGGGTCCAATCACCTGTTGTTGGAGGTGAAGTTTGATGCTCTGGAGGTCATCAGTTTGGGACCATGACGGGTGTGCTATTTTGGGAGGCTGTAAATTCATCTCTAAAGGTCTTTATATGAGCCTTCTAGAAGTCGAAGCCATTCTAGAGGGGCTGAGAGTGCTTGTTGGGGCGTGGTCGGGTCCAATCACCTGTTGTTGGAGGTGAAGTTTGATGCTCTGGAGGTCATCAGTTTGGGACCATGACGGGTGTGCTATTTTGGGAGGCTGTAAAAATTCATCTCTAAAGGTCTTTATATGAGCCTTCTAGAAGTCGAAGCCATTCTAGAGGGGCTGAGAGTTCTTGTTGGGGCGTGGTCAGGTCCTATAGAAGGGTGGGTTGGTTATATACTCTTATGCGCGTTCCTTTTTCGAACCTTTTGGTATGTATTGCCCTCTAACTATAGATCAGATCCACCGGACGAGGTGAAGTCTGATGCTCCAGAAGTCATCAAGCTTCTCAATAGGGAGACGTTTTAA

mRNA sequence

ATGACCCACGCTTCCCCTAATTTAGATTACTTCAGAATTTGGATTGATTCTCTCCTATGTGATTTTGGAGTTGGAGTTGTTCTAATGGCCCTGTGGTTGGTGCTGTTTCGGGCTCTCCCACCCCTTTCCCAAGTCGAAGCCATTCTAGAGGGGCTGAGAGTTCTTGTTGGGGCGTGGTCAGGTCCTATAGAAGGGTGGGTTGGTTATATACTCTTATGCGCGTTCCTTTTTCGAACCTTTTGGTATGTATTGCCCTCTAACTATAGATCAGATCCACCGGACGAGGTGAAGTCTGATGCTCCAGAAGTCATCAAGCTTCTCAATAGGGAGACGTTTTAA

Coding sequence (CDS)

ATGACCCACGCTTCCCCTAATTTAGATTACTTCAGAATTTGGATTGATTCTCTCCTATGTGATTTTGGAGTTGGAGTTGTTCTAATGGCCCTGTGGTTGGTGCTGTTTCGGGCTCTCCCACCCCTTTCCCAAGTCGAAGCCATTCTAGAGGGGCTGAGAGTTCTTGTTGGGGCGTGGTCAGGTCCTATAGAAGGGTGGGTTGGTTATATACTCTTATGCGCGTTCCTTTTTCGAACCTTTTGGTATGTATTGCCCTCTAACTATAGATCAGATCCACCGGACGAGGTGAAGTCTGATGCTCCAGAAGTCATCAAGCTTCTCAATAGGGAGACGTTTTAA

Protein sequence

MTHASPNLDYFRIWIDSLLCDFGVGVVLMALWLVLFRALPPLSQVEAILEGLRVLVGAWSGPIEGWVGYILLCAFLFRTFWYVLPSNYRSDPPDEVKSDAPEVIKLLNRETF
Homology
[Close]
BLAST of CcUC06G115410 vs. NCBI nr
Match: XP_030925283.1 (uncharacterized protein LOC115952312 [Quercus lobata])

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-11
Identity = 44/76 (57.89%), Postives = 51/76 (67.11%), Query Frame = 0 

Query: 37  RALPPLSQVEAILEGLRVLVGAWSGPIEGWVGYILLCAFLFRTFWYVLPSNYRSDPPDEV 96
           + LP L Q+ A   GL  LV  ++   EGWVGYILLCAFL RTFWYVLP NYRSDPPDE 
Sbjct: 61  KELPDLRQLRA-FRGL--LVIHYTHYTEGWVGYILLCAFLLRTFWYVLPPNYRSDPPDEK 120

Query: 97  KSDAPEVIKLLNRETF 113
            + A     LL+R T+
Sbjct: 121 LNSA----LLLSRRTY 129

[Close]
BLAST of CcUC06G115410 vs. NCBI nr
Match: XP_027184067.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC113782373 [Coffea eugenioides])

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 61  GPIEGWVGYILLCAFLFRTFWYVLPSNYRSDPPDEVKSDAPEVIKLLNRETF 113
           G  EGWVGYILLCAFL +TFWYVLP NYRSDPPDE ++ A     LL+R T+
Sbjct: 40  GYAEGWVGYILLCAFLLQTFWYVLPPNYRSDPPDEKRNSA----LLLSRRTY 87

[Close]
BLAST of CcUC06G115410 vs. NCBI nr
Match: XP_042491226.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC122071023 [Macadamia integrifolia])

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 0 

Query: 61  GPIEGWVGYILLCAFLFRTFWYVLPSNYRSDPPDEVKSDAPEVIKLLNRETF 113
           G  EGWVGYILLCAFL RTFWYVLP NYRSDPPDE  + A     LL+R T+
Sbjct: 81  GYTEGWVGYILLCAFLLRTFWYVLPPNYRSDPPDEKLNSA----LLLSRRTY 128

[Close]
BLAST of CcUC06G115410 vs. NCBI nr
Match: XP_027109433.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC113729324 [Coffea arabica])

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-10
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 61  GPIEGWVGYILLCAFLFRTFWYVLPSNYRSDPPDEVKSDAPEVIKLLNRETF 113
           G  EGWVGYILLCAFL +TFWYVLP NYRSDPPDE ++ A     LL+R T+
Sbjct: 157 GYAEGWVGYILLCAFLLQTFWYVLPPNYRSDPPDEKQNSA----LLLSRRTY 204

[Close]
BLAST of CcUC06G115410 vs. NCBI nr
Match: XP_010646950.1 (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100853704, partial [Vitis vinifera])

HSP 1 Score: 74.3 bits (181), Expect = 7.3e-10
Identity = 32/40 (80.00%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 61  GPIEGWVGYILLCAFLFRTFWYVLPSNYRSDPPDEVKSDA 101
           G  EGWVGYILLCAFL RTFWYVLP NYRSDPPDE  + A
Sbjct: 2   GYTEGWVGYILLCAFLLRTFWYVLPPNYRSDPPDEKLNSA 41

[Close]
BLAST of CcUC06G115410 vs. ExPASy TrEMBL
Match: A0A6P6W266 (LOW QUALITY PROTEIN: uncharacterized protein LOC113729324 OS=Coffea arabica OX=13443 GN=LOC113729324 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 7.2e-11
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 61  GPIEGWVGYILLCAFLFRTFWYVLPSNYRSDPPDEVKSDAPEVIKLLNRETF 113
           G  EGWVGYILLCAFL +TFWYVLP NYRSDPPDE ++ A     LL+R T+
Sbjct: 157 GYAEGWVGYILLCAFLLQTFWYVLPPNYRSDPPDEKQNSA----LLLSRRTY 204

[Close]
BLAST of CcUC06G115410 vs. ExPASy TrEMBL
Match: A0A6P8BX57 (LOW QUALITY PROTEIN: uncharacterized protein LOC116190061 OS=Punica granatum OX=22663 GN=LOC116190061 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.8e-09
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 64  EGWVGYILLCAFLFRTFWYVLPSNYRSDPPDEVKSDAPEVIKLLNRETF 113
           EGWVGYILLCAF  RTFWYVLP NYRSDPP+E    A     LL+R T+
Sbjct: 5   EGWVGYILLCAFFLRTFWYVLPPNYRSDPPEEKLHSA----LLLSRRTY 49

[Close]
BLAST of CcUC06G115410 vs. ExPASy TrEMBL
Match: A0A5D2CW41 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D04G110200v1 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-08
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 0 

Query: 61  GPIEGWVGYI--LLCAFLFRTFWYVLPSNYRSDPPDEVKSDAPEVIKLLNRETF 113
           G  EGW GYI  LLCAF  RTFWYVLP NYRSDPPDE  +     + LL+R+T+
Sbjct: 7   GYTEGWFGYILLLLCAFFLRTFWYVLPPNYRSDPPDEKLNS----VLLLSRQTY 56

[Close]
BLAST of CcUC06G115410 vs. ExPASy TrEMBL
Match: A0A0D2U4T9 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G212600 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.7e-08
Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = 0 

Query: 60  SGPIEGWVGYILLC--AFLFRTFWYVLPSNYRSDPPDEVKSDAPEVIKLLNRETF 113
           +G  EGW GYILL   AF  RTFWYVLP NYRSDPPDE  + A    +LL+R T+
Sbjct: 6   AGYTEGWFGYILLLLYAFFLRTFWYVLPPNYRSDPPDEKLNSA----QLLSRRTY 56

[Close]
BLAST of CcUC06G115410 vs. ExPASy TrEMBL
Match: A0A1S3XDI4 (uncharacterized protein LOC107763905 OS=Nicotiana tabacum OX=4097 GN=LOC107763905 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-07
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 67  VGYILLCAFLFRTFWYVLPSNYRSDPPDEVKSDAPEVIKLLNRETF 113
           VGYILLCAFL RTFWYVLP NYRSDPPD+  + A     LL+R T+
Sbjct: 3   VGYILLCAFLLRTFWYVLPPNYRSDPPDKKLNSA----LLLSRRTY 44

The following BLAST results are available for this feature:
BLAST of CcUC06G115410 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_030925283.11.7e-1157.89uncharacterized protein LOC115952312 [Quercus lobata][more]
XP_027184067.11.1e-1067.31LOW QUALITY PROTEIN: uncharacterized protein LOC113782373 [Coffea eugenioides][more]
XP_042491226.11.1e-1069.23LOW QUALITY PROTEIN: uncharacterized protein LOC122071023 [Macadamia integrifoli... [more]
XP_027109433.11.5e-1067.31LOW QUALITY PROTEIN: uncharacterized protein LOC113729324 [Coffea arabica][more]
XP_010646950.17.3e-1080.00PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100853704, partial [V... [more]
BLAST of CcUC06G115410 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC06G115410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6P6W2667.2e-1167.31LOW QUALITY PROTEIN: uncharacterized protein LOC113729324 OS=Coffea arabica OX=1... [more]
A0A6P8BX571.8e-0967.35LOW QUALITY PROTEIN: uncharacterized protein LOC116190061 OS=Punica granatum OX=... [more]
A0A5D2CW411.5e-0861.11Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D04G110200v1 PE=... [more]
A0A0D2U4T99.7e-0860.00Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G212600 PE=4 ... [more]
A0A1S3XDI41.3e-0767.39uncharacterized protein LOC107763905 OS=Nicotiana tabacum OX=4097 GN=LOC10776390... [more]
BLAST of CcUC06G115410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC06G115410.1CcUC06G115410.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane