CcUC05G107590 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC05G107590
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr05: 34556556 .. 34560045 (-)
RNA-Seq Expression	CcUC05G107590
Synteny	CcUC05G107590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAATCAAAGGAAGAGTATAGATTTTGTAATCAGGGACGGAACTGAAATAATACACTTTACCAGAGCCGGCGAGCCCAGAGACGACAGTTTTTTATACCTCTCTGGCAGTTCCCCGGCAGACCCAGCGACACCGCACAACAAGACGGCTCCAACGGAGACATAGAAGCTGTTGAACAACCCGACCCAACCCTAATGTAAAACACCTCGAAAAGAGGCATCAAAAGCAAAGAGAGGATATAAAGGCCCAAGCCCAAGTTGATTCGGATTCGAGCATCGCACCGACGACCAAAGAAAACGACGGAAAGAAGGCCGGCGACGACGAGGGGCATGTAAGGGACGGCGAAGATTCGATTGATGTGGGTATGAGGGTATATGTGGGAAAAGTATTCGATGGCCGTTATGAAGGTATTGCATGGAAGAAGGCATCCGGCGCCTAAAATGAAGTAAGTTATGTAAGTTAAATTGAAATAATTACCAAAACGGTGCCTAAATTATTAGGCCCTTTCATTTTTTTTTTCTCTCATGATTTGGTGATTGGAAGTTGAAATCTCTACCTCTATACATAAATTTTTTTACAAACTAGGCAGTCACCAAATCTCAATTTCCTAATAATTTCTCTTTCACTCAAGACACACTGTAAAAGCACGGTCCCTAGTTTCTTCTTTCTTTGTCATGTTTGCTTTAGGTATATGTGCAAATGTCCGTATTTAAATATAAATTTTATTAGGCCTCCTTTCTTCCTTTTTGTGAGTGTGCATACATGACCCAAAACCAATCCACTTTTAATGTACATATTTGTAGAAATAGTTTGTAAGTTAAAAATTGGACCTAAATGACCCAAAACCAAGCAAGAAGAGAGCCAATAGCCAATCCCAAAACCAAGAACATAGCCATCAAAATCCCAGCAACCTCCGCATGTTGGAACGACACCAATTTAGAGGCAGAGATCATGGCAACAGCAGTTAAATAGCCATTCGTGAGTCCAAGAAAGCAAGTCAAAATGGCCACTGGAATCTCAGTTCTAAGGAATTGAGGACCATGCAAACACCCCACAAACAGAGGGTAAAACACCACTCTCCCTATACACAATCCCACTGTAATCTTTGAACTCTTTATAACATAAAGCGAAGCTAGAGATTTCCCAAGCAAATCAAACAAATAATACCCAGTTATTAGAGTAATTGGATACCAATCCTTCAAAATCTCTGAACTAACATCCTCTGTTATGTAGCCTGGGAATATGGACAGAGATATCATGAAGAGAGTGGCTACTGAAAAGGCATAGATTTTGATTGTGTTTAATATTTCCCAGAAAGTGGATCTGCTTATGGACCCAAACCAAGGCCCCTTCTTCTGTTCCTCTTGATTCTTCAAATTCTGGTGATGCCTCACAACCGGAAGCTTGGCTGTAGAATTGTATAGCAAAATGCAAAGAATTAAGAATGAAATTCCGGCACCAAAGTAGAGAATTGCGCTTTCTCTTAAGCCTTGGGCGTCCTATGGGTACATTGCTTTTGTTACTAACCTCAATACTGACACTATCACACCTGCTCCAAAATTTACATCCCACGGTTCATTTCCATGTCTTAGATCTGATACAAACAACACGAATAAAAATTGTAGTTTGGGTGGGGATTGAATAAGTGAATGTTTTTATGGTTCCATTTATTTTTTAATCCAAATTTATTATTAATTTTAGGTTAAATTGTGTTTGGATTAACTTCCAAAATAAATGTTTACATTCATTTTCATTTAAACAATTTAAAATAAAAACACTAGCTCCCAAAATTTATTTTTAGTGGTTGCTTAAACACTTTTTTTTTTTTTTTTTTTAATAATTTTAAAAAAAAAAAATTTTTTTCTAATTTTTTTTTTTTTTATTTATTAAAAAATTTTTTTTTTTTTTTTTTTAATAATTTTAAAAAAAAAAAATTTTTTTCTAATTTTTTTTTTTTTTATTTATTAAAAAATTTTTTTTTTTTTTTTTTTAAATTTTAATTACTTGTTTTTTAAATTAAACAAAAGATATTCCAAACACATTTTTTATTCCCTACCGTTTGGAAGAAAATGTTAGAGTTTAGCCCATGTGGATTAAAATTAGAATTTAGTCATAAAATCCTCATAAAGAGTCTCTAAAGTGAGAATTAAAGCCTAACTTTTTCCAAACAATTCTAATTTTCTTCAAACCATAGGGACCAAATTATAACTTTTAAAACCATATTGGGACTAAATTCTAAGTTTTTACAAACCATAGGAACCAAATTCGTAATTTAACCTTAATTTTAAAAAATATATATGTGGATGTATTTTTTTCTCCAAGATATATTCTTCAAATACTTTTAAAAAAAGAATTTTTTTAAGTACTTGGAATGCAAATTTTCAAAATATAAATTGAAATTGAGTTGCAAATCTTAATTCAATTATTGAAAATAAATAAAACAACATTTTACATATTTATATTTAACTTTTTATTAAAACAAAAAACTGAAAAAATAACTTGAATAACTTTTTTATATTTAACTTTTTATTAAATCAAATATTTTTTGGTTGATAAAAAAAGTCTTTCAAGTTCACTCAACTCAACTATCAACCTCTAATTTAAACCAACCGATACCCAGTGGCATGAGTTTGAATTTTCAAATTTGTCTTTCTCTCTCTCTTTTTTTTTTTTGAGTTGTTGAGTTATATGAACAACTTTAATTTGAAATTTCCCAGATATTATCGTTCCACTAATCTTATTTATTGTAAGATTATTTTTTATTCGATTGTTTTTAAATATAACAAAATAAATAAACTACTTACAAACATAAAAAAATTTCACTTTAATTTATTATGCATAAATAACAATAATCTAAGAATAGTATAAGGAGTGGATTTGAAATTTTTTATTGATAGATATGAAATAATTGTAAATTGTGACGTGATGCATCTTGCATAATGCATATTAATCAATCAAAGAATCTTTTCTCGTGATATTTTGATGGAAAGAAACTTATATGCACTCGGAGTTACACCCATCTTTTGTGCTGCGCAGAGAAAGGTGGGAAACATTTATTTTAAAATGGAATAAAATACTTTACCAGAGCCCGCGTACCCAGAGACAACAGCTTGCATATACCTCTCCGGCAGTTCCCCGGCGGACCCAACAACGCCGCTTTGAACAAGGGCCTCGGCGACACCGCACATCACGACGGCTCCCAGGGAGACATAGAAGCCGTTGAACAAGCCGATTCGACCCCTAATGTAAAACACTTCTAAAAGAGGCATCAAAAGCAAAGAGAGCACAGAAAGGGCCAAGCCCAGGTTTATTCGGACCCGAGCATCGCACTGCCGACCAAAGAAAACGAGGGAAAGAAGGGCGGCGACGACGACGGGCATATAAGCGACGGCGAAGATCTGATTGATGTGGGTATGAGGGTATATGTGGGAAAAGTAATCGATGACCGTTATGAAGGTGTTCCATGGAAGAATGCATCCGGCGCCTAA

mRNA sequence

AAAAAAATCAAAGGAAGAGTATAGATTTTGTAATCAGGGACGGAACTGAAATAATACACTTTACCAGAGCCGGCGAGCCCAGAGACGACAGTTTTTTATACCTCTCTGGCAGTTCCCCGGCAGACCCAGCGACACCGCACAACAAGACGGCTCCAACGGAGACATAGAAGCTGTTGAACAACCCGACCCAACCCTAATGTAAAACACCTCGAAAAGAGGCATCAAAAGCAAAGAGAGGATATAAAGGCCCAAGCCCAAGTTGATTCGGATTCGAGCATCGCACCGACGACCAAAGAAAACGACGGAAAGAAGGCCGGCGACGACGAGGGGCATGTAAGGGACGGCGAAGATTCGATTGATGTGGGTATGAGGGTATATGTGGGAAAAGTATTCGATGGCCGTTATGAAGGTATTGCATGGAAGAAGGCATCCGGCGCCTAAAATGAAAGCCCGCGTACCCAGAGACAACAGCTTGCATATACCTCTCCGGCAGTTCCCCGGCGGACCCAACAACGCCGCTTTGAACAAGGGCCTCGGCGACACCGCACATCACGACGGCTCCCAGGGAGACATAGAAGCCGTTGAACAAGCCGATTCGACCCCTAATAGGCATCAAAAGCAAAGAGAGCACAGAAAGGGCCAAGCCCAGGTTTATTCGGACCCGAGCATCGCACTGCCGACCAAAGAAAACGAGGGAAAGAAGGGCGGCGACGACGACGGGCATATAAGCGACGGCGAAGATCTGATTGATGTGGGTATGAGGGTATATGTGGGAAAAGTAATCGATGACCGTTATGAAGGTGTTCCATGGAAGAATGCATCCGGCGCCTAA

Coding sequence (CDS)

ATGTGGGAAAAGTATTCGATGGCCGTTATGAAGGTATTGCATGGAAGAAGGCATCCGGCGCCTAAAATGAAAGCCCGCGTACCCAGAGACAACAGCTTGCATATACCTCTCCGGCAGTTCCCCGGCGGACCCAACAACGCCGCTTTGAACAAGGGCCTCGGCGACACCGCACATCACGACGGCTCCCAGGGAGACATAGAAGCCGTTGAACAAGCCGATTCGACCCCTAATAGGCATCAAAAGCAAAGAGAGCACAGAAAGGGCCAAGCCCAGGTTTATTCGGACCCGAGCATCGCACTGCCGACCAAAGAAAACGAGGGAAAGAAGGGCGGCGACGACGACGGGCATATAAGCGACGGCGAAGATCTGATTGATGTGGGTATGAGGGTATATGTGGGAAAAGTAATCGATGACCGTTATGAAGGTGTTCCATGGAAGAATGCATCCGGCGCCTAA

Protein sequence

MWEKYSMAVMKVLHGRRHPAPKMKARVPRDNSLHIPLRQFPGGPNNAALNKGLGDTAHHDGSQGDIEAVEQADSTPNRHQKQREHRKGQAQVYSDPSIALPTKENEGKKGGDDDGHISDGEDLIDVGMRVYVGKVIDDRYEGVPWKNASGA

Homology

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BLAST of CcUC05G107590 vs. NCBI nr
Match: XP_020214655.1 (ubiquitin carboxyl-terminal hydrolase 34 [Cajanus cajan])

HSP 1 Score: 71.6 bits (174), Expect = 6.4e-09
Identity = 43/130 (33.08%), Postives = 72/130 (55.38%), Query Frame = 0


Query: 28  PRDNSLHIPLRQFPGGPNNAALNKGLGDTAHHDGSQGDIEAVEQADSTPN------RHQK 87
           P D+SLH+PLRQ  GG +N AL+K +      +   G +EA  ++D+  N       + +
Sbjct: 21  PGDDSLHVPLRQLAGGADNGALHKSIRHAGKCNSGGGGVEAFVKSDAALNVEGVDKGNGE 80

Query: 88  QREHRKGQAQVYSDPSIALPTKENEGKKGGDDDGHISDGEDLIDVGMRVYVGKVIDDRYE 147
           +  + + QA V SD  +    +E++ +   + D H+++GED ID G+ V VG+VI+   E
Sbjct: 81  EGNNEEEQANVDSDKGVGFVAEEDDEEDSDEADEHVNNGEDAIDAGIGVEVGEVINGCDE 140

Query: 148 GVPWKNASGA 152
            VP +  + A
Sbjct: 141 SVPREKVTQA 150

The following BLAST results are available for this feature:

BLAST of CcUC05G107590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_020214655.1	6.4e-09	33.08	ubiquitin carboxyl-terminal hydrolase 34 [Cajanus cajan]	[more]

BLAST of CcUC05G107590 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC05G107590 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC05G107590 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC05G107590.1	CcUC05G107590.1	mRNA