CcUC05G099000 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC05G099000
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationCicolChr05: 27431095 .. 27435612 (-)
RNA-Seq ExpressionCcUC05G099000
SyntenyCcUC05G099000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATACGTGATTCTTCCTTCTAAAGCTTGGTCAACTGCTCAATATACAGACTCCAAAACGAAATATTTCCGAACAAACACATGGAACGAAATTTATACATGCATCTTGACTTGTAATTAAAATGGTGCCATTAACTCATTTGATTCAAAATTTTATCATAGCTAAGTGTGGGTAAGTATGCTGCTGGATAGTATACTGCCCATTGCCCATTTGATTCAAGCTTTTATCATAGCCAAAGTCGATAGATCTTTATGAAGCATACACGGTGTGAGGTTATCAGTTCAAAAGTCCAAGCAAAAATGAAAATAGTATAATGAATATTACATGGTTTCAAATGAAGCATTTTCCGTATAGGAAAAATACCTTGTTTGGATGGACATCATCAAAAACATGAGCTTGACCGCCATAGAAAATAGTCATCTGTCTGTTGTTAGAATCAAGATCCTGCTGACTGTCACAACAGATTTAAACACACAACACTCTTAAGATCCCGCATTTGACAATCATTTGGTTTTTAAAATCAAGTTTTATACATTATCAACTACTTTCACTTACAGGTTTCTTTATTTTATTTTCTACTTTTTTACAAATGTTGTCAAAATCAAAGCTAAGTTTTGGAAAAATATATACATAAATAATTAAAACATGTATTTGTTTTTGGAAATTGGCTAAGAATTCAAATGCTTACTTAATAAAGATGAAAACCATTTTAAGAAATTGTAAAATAAAAAGCACAATTTTCAAAAACCAAGTGGCGAGACTTTATATTGCCGTAGGGCAATTGGAAATGAAAGCTATTCAACATGATGTGCGGTCTGGAATTTACCTTGGAGGGTTAGAAGATTTGTATGCTACACCTTCAGTCTTGGCTTTCTGCTTGTCACAACTTCGCAACATTTGAGAGGAGTGTCTCTCATCATGTCCAGCAATAAAGCTACTTAAAAGTCCAGGGCTTTTCATCCCAGTTCTAGATCCTTCATCAGCAGCAGATTGAGAAATACTGGGAGGAGCAACATTAAATTCTCTGGAATAATTGGAAGCTACTTGATGAACACGAGGCACGAAATGACTCCTGAGTGGAGAATTTGGTGCAGAAGTCATGTTCGATGGAATAGGTCTCTCCCATTTGGAAACACTAGGATTAAATCTAGTGCCAAGTGAATGTTGTGTGAGGGAAGAAGAAGCAATTCTTGGTGGCTGCATACTGTAAACCGTCTCATTATCATTGTATCTTGGTCGATCTCCACCAGCTCCATTTTGTAGTATCTGATATGATTAAAGAAAATTATATCAAATTATCCATTAAAGTCCTTTTTACTTCCATGTGAATATGAGCAAAGAAACTAAAAGCTGTCGAAACCTTCACTGCATGTGACTCTCAAGAGAGTCAGAGCCTTACATGAGGAATTTGGTTTCTATATGACCCCATGAAAGTAGAATCCGGATTACTGCGTTTAATCCCTGCTATTCGGTTACCATTTTCAGGTCCAGATATATCATTCCTTGGACTGTAGAATGGAACCCCTTCAAGGTAATCTCCAACCTGGTTTTCTATCAAAAGTGAGGAAAGAACAGAGTAAATTTTACGTCAAACAAGAATTCAATGCTCAAATCAGACAGATGACACTTGAAAATAAAGCAAACAGCGACAGTAAGGATTCAAATCACATACATCAGTAAGTTCAGTTCAAACTTCGTAGATGAATCAAAATAAAACATGCACGTCACAACACTCAGTTCAAGGAGAAATATACAGGCTGAATGAGACTTCTGGCCTGAGTAGGAAGAAATTAACAATGGGAGAGGAAGATTCTAGAAAAAATAATTGTAGTTTCTATTTCAGAATAGCACATAGTTTTAAAAACTGAAAGAAAAGAGATGGTCAAATGGAAAAGAGGTCTTTCAGAAAGCTTCTAACCAATGGTGACCTCAAAGACACCAATCCTTTACACTTTACAGTGATATAAAGAGCAAAGGGAAAGAGAGCTGCAGACAGAAATTCTACGTTGCAGGAAGAAAAATTGAATAAAACCACGGAAGTCAACTTTATACAGAAAAGATGAGTTCACACATGAAAATCAATATTTTATAATCAAAAGCTGCCTAATCAAAGAATGTAACAAAAAAAATGAACAATCATGCTCAATGAGGATCGAAAACCATTAGAAGAAGTATAACGATCGGAATATTCATCAAAACACAAAGAAAACCAAAAAAAATTGGAAGTCATTCAGGCCAAAAGGAGAAGCAATTCAACAAAATCATTAAAACAACAGCCAATGGACACTAAATAACCTAGAAAGATGCAAATTCAAGACAACGAATGTTAACAAACAGACCAGAAGCAAGATCGGAGGCAGCAGAGAGGAGTCCACGGCCACCACTGGAAGAAGCCAAAGCCGACGGCGGCGTCGATGCCTCCGAGAAGCTTACATCCGGCGTCTTCGCGGCCAAGAGTACGGAAGCATCTTTGGTCTTAATGCCAAGAAAATCATGGAAGATCGCATTACCTAACTGTTGAACCTGGCTCGTACTCTTCTTCTCACCATTGCTGCAGTAGCCAGCATTGGAATAAGCGCCTTGACGAGCCATTAGAGACAGAACCACAAGCAATGCCTCTTTACGAAAGCATCCATTTCACTCTGCAGAAAGAGCAAGAGTGTAGAGAACAACAAAAGACAAGAAACTCGGTTTTTGAAAAGAAACATACAAAGAACCAAAAAAAAAAGGGCAAAAAGAATCAGAAGAGAGAGGAAACTGAAAGAATCAGGCTCTTTTCTCGAGATAAACAGCAGAGAAAAGCATCTTGAGAAACTTTCCGACGCCGGCGCCAGTGAGGGACTCAGTTTCTTCAGTTCATCGGATTTTGATTTAAATAATGACAAATTCAGCGAGTTCGTTGATTTGTGGCTGGCCGTCAACAAATTTCGTTGCGCAAGAACGAAAAATCGAACAGGCGTCGAGCTCATCGAAATTAAAATTGCATGAAGAGAGGAATTAGTTCAAAGAAATATGAATGATGAAGATTTTGAAGGATGAAGATGGACAGCGTCTCCAGTTGAAGTTACCATTGGAAAGAAAATAGAACTCAATCCAACTTTGGAGAAAAATTTTGGGTTTTGTGTTGCAAACTTTAGTGTTAAATTTGGGTTATTTGTGTTTAAAATAAACATTTTGTACTTGTAGCCTGTCTCTTCATTGCTTTCCGTCAAAGTGCTTTGTTGTTTAGTTGAAAATGGTTGGAATGAGGATTCAACCCTTAATTTGATAATAATGACGATTTAACAAACTATCATGAGTTAGTCTAGTAGTAAAAAATGAGACATAATCTCAATAAACTATCATGAGTTTGATTCTGCTTGGTCTTTGATTATTCATGGTCTCTATGGAGGTGAAGAGTCCTCTTTGGTTTCGGTCGACGTGTTTGTGATATTGATCAGGCAGTACGCTTGTGCAAGTATATTTTTAACGAGCTTGCAATGTGAATACTACTTCTTTATGGATTTGATTGCTTTTCCATTTATTTTAACCGTCCTAGGATATGAAAATCACATTCCTTCACCATTGCAATTTAAGGGTTATATTCATCTTGGTATTGTCATTCTCTGTCGTTGAGTGCGCTTGATCGGGACATGAAATTGAACAGAGAAATTCTTTAACTCATTTTCTTGTTAGAGACAATGGTTTGATTTATATTTTTGTTTTTGTTCTTACGTGATGATAATTTCATCAGGCATGCTTCAACATGCAATTTGAACTTTTGAATTTGCTTGCAATCTAGAAACAATTTTAGGGACCAACTCGGAGGGTTTGTTTGAGATTTTACTGGATTCACTCTGCAAATAAGGGCACATCAGGGTAACTTCTGAGTATTTCAATAAGAAAATGAATATGGATTCGAGTTTTGAACAATCAATTCGAGCATATAATATACTTCTAAATGAATGGTTTCAATCAAGAAAGCTTAAACATGCTGAGAGACTCTGGTTTAAGATGAAGAAGAACAAAATATCTCCCATTGTTGTTACATATGACACCCTTGTAGAAGGCTATTGTCGAATGCGTCATGTTGAAAGCCATTGAATTGGTAGATGAGATTAGGGGAGAATGTATTAAGCCAAATGCAATCATATATAACCCAATAGTTGATGCACTTGGGGAAGCCGGAAGTTTTAAGGAGGCATTGGGAATGATGGAGCAGTTCACGGTTTTGGAGCAAGGCCCTACTATCTCAATGTACAATTCTCTTATCAAGGGGTATTGCAACGCATGAGATCTTTTTAGGGCTAGCAAGATCCTTAAATCGATGATTGGTAGAGGATTCACTCCGACCCCGACTACCTATAACTACTTATTTAGATTCTTCTCGAAGTATGGTAAAATTGAGGAGGGTATGAACCTTTACAATAAAATGATTGAATCAGGATATGCACCAGATAAACTTACGGATCACTTGTTGTTGAAGATGTTATGTGAAGAGGAGAGATTAAACATTTGCAGTTCAAGTTTGCAATGA

mRNA sequence

ATGCATACGGCTTTTCATCCCAGTTCTAGATCCTTCATCAGCAGCAGATTGAGAAATACTGGGAGGAGCAACATTAAATTCTCTGGAATAATTGGAAGCTACTTGATGAACACGAGGCACGAAATGACTCCTGAGTGGAGAATTTGGTGCAGAAGTCATGTCCAGATATATCATTCCTTGGACTGTAGAATGGAACCCCTTCAAGGTAATCTCCAACCTGGTTTTCTATCAAAAGTGAGGAAAGAACAGAGTAAATTTTACGTCAAACAAGAATTCAATGCTCAAATCAGACAGATGACACTTGAAAATAAAGCAAACAGCGACAGTAAGGATTCAAATCACATACATCAACCAGAAGCAAGATCGGAGGCAGCAGAGAGGAGTCCACGGCCACCACTGGAAGAAGCCAAAGCCGACGGCGGCGTCGATGCCTCCGAGAAGCTTACATCCGGCGTCTTCGCGGCCAAGAGTACGGAAGCATCTTTGCATTGGAATAAGCGCCTTGACGAGCCATTAGAGACAGAACCACAAGCAATGCCTCTTTACGAAAGCATCCATTTCACTCTGCAGAAAGAGCAAGAGTGTAGAGAACAACAAAAGACAAGAAACTCGCCTGTCTCTTCATTGCTTTCCGTCAAAAAGGCTATTGTCGAATGCGTCATGTTGAAAGCCATTGAATTGGTAGATGAGATTAGGGGAGAATGTATTAAGCCAAATGCAATCATATATAACCCAATAGTTGATGCACTTGGGGAAGCCGGAAGTTTTAAGGAGGCATTGGGAATGATGGAGCAGTTCACGGTTTTGGAGCAAGGCCCTACTATCTCAATGTACAATTCTCTTATCAAGGGGGCTAGCAAGATCCTTAAATCGATGATTGGTAGAGGATTCACTCCGACCCCGACTACCTATAACTACTTATTTAGATTCTTCTCGAAGTATGGTAAAATTGAGGAGGGTATGAACCTTTACAATAAAATGATTGAATCAGGATATGCACCAGATAAACTTACGGATCACTTGTTGTTGAAGATGTTATGTGAAGAGGAGAGATTAAACATTTGCAGTTCAAGTTTGCAATGA

Coding sequence (CDS)

ATGCATACGGCTTTTCATCCCAGTTCTAGATCCTTCATCAGCAGCAGATTGAGAAATACTGGGAGGAGCAACATTAAATTCTCTGGAATAATTGGAAGCTACTTGATGAACACGAGGCACGAAATGACTCCTGAGTGGAGAATTTGGTGCAGAAGTCATGTCCAGATATATCATTCCTTGGACTGTAGAATGGAACCCCTTCAAGGTAATCTCCAACCTGGTTTTCTATCAAAAGTGAGGAAAGAACAGAGTAAATTTTACGTCAAACAAGAATTCAATGCTCAAATCAGACAGATGACACTTGAAAATAAAGCAAACAGCGACAGTAAGGATTCAAATCACATACATCAACCAGAAGCAAGATCGGAGGCAGCAGAGAGGAGTCCACGGCCACCACTGGAAGAAGCCAAAGCCGACGGCGGCGTCGATGCCTCCGAGAAGCTTACATCCGGCGTCTTCGCGGCCAAGAGTACGGAAGCATCTTTGCATTGGAATAAGCGCCTTGACGAGCCATTAGAGACAGAACCACAAGCAATGCCTCTTTACGAAAGCATCCATTTCACTCTGCAGAAAGAGCAAGAGTGTAGAGAACAACAAAAGACAAGAAACTCGCCTGTCTCTTCATTGCTTTCCGTCAAAAAGGCTATTGTCGAATGCGTCATGTTGAAAGCCATTGAATTGGTAGATGAGATTAGGGGAGAATGTATTAAGCCAAATGCAATCATATATAACCCAATAGTTGATGCACTTGGGGAAGCCGGAAGTTTTAAGGAGGCATTGGGAATGATGGAGCAGTTCACGGTTTTGGAGCAAGGCCCTACTATCTCAATGTACAATTCTCTTATCAAGGGGGCTAGCAAGATCCTTAAATCGATGATTGGTAGAGGATTCACTCCGACCCCGACTACCTATAACTACTTATTTAGATTCTTCTCGAAGTATGGTAAAATTGAGGAGGGTATGAACCTTTACAATAAAATGATTGAATCAGGATATGCACCAGATAAACTTACGGATCACTTGTTGTTGAAGATGTTATGTGAAGAGGAGAGATTAAACATTTGCAGTTCAAGTTTGCAATGA

Protein sequence

MHTAFHPSSRSFISSRLRNTGRSNIKFSGIIGSYLMNTRHEMTPEWRIWCRSHVQIYHSLDCRMEPLQGNLQPGFLSKVRKEQSKFYVKQEFNAQIRQMTLENKANSDSKDSNHIHQPEARSEAAERSPRPPLEEAKADGGVDASEKLTSGVFAAKSTEASLHWNKRLDEPLETEPQAMPLYESIHFTLQKEQECREQQKTRNSPVSSLLSVKKAIVECVMLKAIELVDEIRGECIKPNAIIYNPIVDALGEAGSFKEALGMMEQFTVLEQGPTISMYNSLIKGASKILKSMIGRGFTPTPTTYNYLFRFFSKYGKIEEGMNLYNKMIESGYAPDKLTDHLLLKMLCEEERLNICSSSLQ
Homology
[Close]
BLAST of CcUC05G099000 vs. NCBI nr
Match: XP_038900116.1 (pentatricopeptide repeat-containing protein At5g11310, mitochondrial-like [Benincasa hispida] >XP_038900117.1 pentatricopeptide repeat-containing protein At5g11310, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 233.0 bits (593), Expect = 4.0e-57
Identity = 118/141 (83.69%), Postives = 125/141 (88.65%), Query Frame = 0 

Query: 223 KAIELVDEIRGECIKPNAIIYNPIVDALGEAGSFKEALGMMEQFTVLEQGPTISMYNSLI 282
           +AIELVDE+RGE I+PNAIIYNPIVDALGEAG FKEALGMME+F VLEQGPTIS YNSL+
Sbjct: 320 RAIELVDEMRGEGIEPNAIIYNPIVDALGEAGRFKEALGMMERFMVLEQGPTISTYNSLV 379

Query: 283 K---------GASKILKSMIGRGFTPTPTTYNYLFRFFSKYGKIEEGMNLYNKMIESGYA 342
           K         GASKILKSMI RGFTPTPTTYNY FRFFSK+GKIEEGMNLYNKMIESGYA
Sbjct: 380 KGYCKTGDLSGASKILKSMISRGFTPTPTTYNYFFRFFSKHGKIEEGMNLYNKMIESGYA 439

Query: 343 PDKLTDHLLLKMLCEEERLNI 355
           PDKLT HLLLKMLCEEERLN+
Sbjct: 440 PDKLTYHLLLKMLCEEERLNL 460

[Close]
BLAST of CcUC05G099000 vs. NCBI nr
Match: KAG6608175.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 230.7 bits (587), Expect = 2.0e-56
Identity = 117/140 (83.57%), Postives = 123/140 (87.86%), Query Frame = 0 

Query: 224 AIELVDEIRGECIKPNAIIYNPIVDALGEAGSFKEALGMMEQFTVLEQGPTISMYNSLIK 283
           AIELVDE+RGE I+PNAIIYNPIVDALGE+G FKEALGMME+FTVLEQGPTIS YNSLIK
Sbjct: 321 AIELVDEMRGEGIEPNAIIYNPIVDALGESGRFKEALGMMERFTVLEQGPTISTYNSLIK 380

Query: 284 ---------GASKILKSMIGRGFTPTPTTYNYLFRFFSKYGKIEEGMNLYNKMIESGYAP 343
                    GASKILK M+ RGFTPTPTTYNY FRFFSKYGKIEEGMNLYNKMIESGY P
Sbjct: 381 GYCKAGDLSGASKILKLMMNRGFTPTPTTYNYFFRFFSKYGKIEEGMNLYNKMIESGYTP 440

Query: 344 DKLTDHLLLKMLCEEERLNI 355
           DKLT HLLLKMLCEEERLN+
Sbjct: 441 DKLTYHLLLKMLCEEERLNL 460

[Close]
BLAST of CcUC05G099000 vs. NCBI nr
Match: XP_022940385.1 (pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Cucurbita moschata])

HSP 1 Score: 230.7 bits (587), Expect = 2.0e-56
Identity = 117/140 (83.57%), Postives = 123/140 (87.86%), Query Frame = 0 

Query: 224 AIELVDEIRGECIKPNAIIYNPIVDALGEAGSFKEALGMMEQFTVLEQGPTISMYNSLIK 283
           AIELVDE+RGE I+PNAIIYNPIVDALGE+G FKEALGMME+FTVLEQGPTIS YNSLIK
Sbjct: 321 AIELVDEMRGEGIEPNAIIYNPIVDALGESGRFKEALGMMERFTVLEQGPTISTYNSLIK 380

Query: 284 ---------GASKILKSMIGRGFTPTPTTYNYLFRFFSKYGKIEEGMNLYNKMIESGYAP 343
                    GASKILK M+ RGFTPTPTTYNY FRFFSKYGKIEEGMNLYNKMIESGY P
Sbjct: 381 GYCKAGDLSGASKILKLMMNRGFTPTPTTYNYFFRFFSKYGKIEEGMNLYNKMIESGYTP 440

Query: 344 DKLTDHLLLKMLCEEERLNI 355
           DKLT HLLLKMLCEEERLN+
Sbjct: 441 DKLTYHLLLKMLCEEERLNL 460

[Close]
BLAST of CcUC05G099000 vs. NCBI nr
Match: XP_022981318.1 (pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Cucurbita maxima])

HSP 1 Score: 230.7 bits (587), Expect = 2.0e-56
Identity = 117/140 (83.57%), Postives = 123/140 (87.86%), Query Frame = 0 

Query: 224 AIELVDEIRGECIKPNAIIYNPIVDALGEAGSFKEALGMMEQFTVLEQGPTISMYNSLIK 283
           AIELVDE+RGE I+PNAIIYNPIVDALGE+G FKEALGMME+FTVLEQGPTIS YNSLIK
Sbjct: 321 AIELVDEMRGEGIEPNAIIYNPIVDALGESGRFKEALGMMERFTVLEQGPTISTYNSLIK 380

Query: 284 ---------GASKILKSMIGRGFTPTPTTYNYLFRFFSKYGKIEEGMNLYNKMIESGYAP 343
                    GASKILK M+ RGFTPTPTTYNY FRFFSKYGKIEEGMNLYNKMIESGY P
Sbjct: 381 GYCKAGDLSGASKILKLMMNRGFTPTPTTYNYFFRFFSKYGKIEEGMNLYNKMIESGYTP 440

Query: 344 DKLTDHLLLKMLCEEERLNI 355
           DKLT HLLLKMLCEEERLN+
Sbjct: 441 DKLTYHLLLKMLCEEERLNL 460

[Close]
BLAST of CcUC05G099000 vs. NCBI nr
Match: KAG7031815.1 (Pentatricopeptide repeat-containing protein, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 230.7 bits (587), Expect = 2.0e-56
Identity = 117/140 (83.57%), Postives = 123/140 (87.86%), Query Frame = 0 

Query: 224 AIELVDEIRGECIKPNAIIYNPIVDALGEAGSFKEALGMMEQFTVLEQGPTISMYNSLIK 283
           AIELVDE+RGE I+PNAIIYNPIVDALGE+G FKEALGMME+FTVLEQGPTIS YNSLIK
Sbjct: 321 AIELVDEMRGEGIEPNAIIYNPIVDALGESGRFKEALGMMERFTVLEQGPTISTYNSLIK 380

Query: 284 ---------GASKILKSMIGRGFTPTPTTYNYLFRFFSKYGKIEEGMNLYNKMIESGYAP 343
                    GASKILK M+ RGFTPTPTTYNY FRFFSKYGKIEEGMNLYNKMIESGY P
Sbjct: 381 GYCKAGDLSGASKILKLMMNRGFTPTPTTYNYFFRFFSKYGKIEEGMNLYNKMIESGYTP 440

Query: 344 DKLTDHLLLKMLCEEERLNI 355
           DKLT HLLLKMLCEEERLN+
Sbjct: 441 DKLTYHLLLKMLCEEERLNL 460

[Close]
BLAST of CcUC05G099000 vs. ExPASy Swiss-Prot
Match: Q9LFM6 (Pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g11310 PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.2e-37
Identity = 77/140 (55.00%), Postives = 106/140 (75.71%), Query Frame = 0 

Query: 224 AIELVDEIRGECIKPNAIIYNPIVDALGEAGSFKEALGMMEQFTVLEQGPTISMYNSLIK 283
           A+E+++E++   ++ N +++NPI+D LGEAG   EALGMME+F V E GPTI  YNSL+K
Sbjct: 304 AMEVLEEMKMAEMEINFMVFNPIIDGLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVK 363

Query: 284 ---------GASKILKSMIGRGFTPTPTTYNYLFRFFSKYGKIEEGMNLYNKMIESGYAP 343
                    GASKILK M+ RG  PT TTYN+ F++FSK+ K EEGMNLY K+IE+G++P
Sbjct: 364 NFCKAGDLPGASKILKMMMTRGVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSP 423

Query: 344 DKLTDHLLLKMLCEEERLNI 355
           D+LT HL+LKMLCE+ +L++
Sbjct: 424 DRLTYHLILKMLCEDGKLSL 443

[Close]
BLAST of CcUC05G099000 vs. ExPASy Swiss-Prot
Match: Q6NQ83 (Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g22470 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.8e-13
Identity = 45/139 (32.37%), Postives = 74/139 (53.24%), Query Frame = 0 

Query: 224 AIELVDEIRGECIKPNAIIYNPIVDALGEAGSFKEALGMMEQFTVLEQGPTISMYNSLIK 283
           A++L  ++    IK + + Y+ ++D+L + GSF +AL +  +  +      +  Y+SLI 
Sbjct: 229 ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIG 288

Query: 284 G---------ASKILKSMIGRGFTPTPTTYNYLFRFFSKYGKIEEGMNLYNKMIESGYAP 343
           G          +K+L+ MIGR   P   T++ L   F K GK+ E   LYN+MI  G AP
Sbjct: 289 GLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAP 348

Query: 344 DKLTDHLLLKMLCEEERLN 354
           D +T + L+   C+E  L+
Sbjct: 349 DTITYNSLIDGFCKENCLH 367

[Close]
BLAST of CcUC05G099000 vs. ExPASy Swiss-Prot
Match: Q0WVK7 (Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g05670 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.4e-12
Identity = 44/143 (30.77%), Postives = 72/143 (50.35%), Query Frame = 0 

Query: 224 AIELVDEIRGECIKPNAIIYNPIVDALGEAGSFKEALGMMEQFTVLEQGPTISMYNSLIK 283
           A EL+ E+    ++PN   YN IV+ L ++G+ +EA+ ++ +F           Y +L+ 
Sbjct: 475 ANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMD 534

Query: 284 G---------ASKILKSMIGRGFTPTPTTYNYLFRFFSKYGKIEEGMNLYNKMIESGYAP 343
                     A +ILK M+G+G  PT  T+N L   F  +G +E+G  L N M+  G AP
Sbjct: 535 AYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAP 594

Query: 344 DKLTDHLLLKMLCEEERLNICSS 358
           +  T + L+K  C    L   ++
Sbjct: 595 NATTFNSLVKQYCIRNNLKAATA 617

[Close]
BLAST of CcUC05G099000 vs. ExPASy Swiss-Prot
Match: Q9SHK2 (Pentatricopeptide repeat-containing protein At1g06580 OS=Arabidopsis thaliana OX=3702 GN=At1g06580 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.4e-12
Identity = 43/134 (32.09%), Postives = 71/134 (52.99%), Query Frame = 0 

Query: 223 KAIELVDEIRGECIKPNAIIYNPIVDALGEAGSFKEALGMMEQFTVLEQGPTISMYNSLI 282
           +A+ LVD+I G   +PN +IYN I+D+L E G    AL +++    +   P +  YNSLI
Sbjct: 167 EAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLI 226

Query: 283 KG---------ASKILKSMIGRGFTPTPTTYNYLFRFFSKYGKIEEGMNLYNKMIESGYA 342
                      +++IL  M+  G +P   T++ L   + K G++ E    YN+MI+    
Sbjct: 227 TRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVN 286

Query: 343 PDKLTDHLLLKMLC 348
           P+ +T + L+  LC
Sbjct: 287 PNIVTYNSLINGLC 300

[Close]
BLAST of CcUC05G099000 vs. ExPASy Swiss-Prot
Match: Q9CA58 (Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana OX=3702 GN=At1g74580 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-11
Identity = 40/138 (28.99%), Postives = 69/138 (50.00%), Query Frame = 0 

Query: 223 KAIELVDEIRGECIKPNAIIYNPIVDALGEAGSFKEALGMMEQFTVLEQGPTISMYNSLI 282
           +A+ L +E  G+ IKPN I+YN ++  L   G   EA  +  + +     P +  +N L+
Sbjct: 374 RALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILV 433

Query: 283 KGASK---------ILKSMIGRGFTPTPTTYNYLFRFFSKYGKIEEGMNLYNKMIESGYA 342
            G  K         ++K MI +G+ P   T+N L   +S   K+E  + + + M+++G  
Sbjct: 434 NGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVD 493

Query: 343 PDKLTDHLLLKMLCEEER 352
           PD  T + LL  LC+  +
Sbjct: 494 PDVYTYNSLLNGLCKTSK 511

[Close]
BLAST of CcUC05G099000 vs. ExPASy TrEMBL
Match: A0A6J1J1S6 (pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111480484 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 9.5e-57
Identity = 117/140 (83.57%), Postives = 123/140 (87.86%), Query Frame = 0 

Query: 224 AIELVDEIRGECIKPNAIIYNPIVDALGEAGSFKEALGMMEQFTVLEQGPTISMYNSLIK 283
           AIELVDE+RGE I+PNAIIYNPIVDALGE+G FKEALGMME+FTVLEQGPTIS YNSLIK
Sbjct: 321 AIELVDEMRGEGIEPNAIIYNPIVDALGESGRFKEALGMMERFTVLEQGPTISTYNSLIK 380

Query: 284 ---------GASKILKSMIGRGFTPTPTTYNYLFRFFSKYGKIEEGMNLYNKMIESGYAP 343
                    GASKILK M+ RGFTPTPTTYNY FRFFSKYGKIEEGMNLYNKMIESGY P
Sbjct: 381 GYCKAGDLSGASKILKLMMNRGFTPTPTTYNYFFRFFSKYGKIEEGMNLYNKMIESGYTP 440

Query: 344 DKLTDHLLLKMLCEEERLNI 355
           DKLT HLLLKMLCEEERLN+
Sbjct: 441 DKLTYHLLLKMLCEEERLNL 460

[Close]
BLAST of CcUC05G099000 vs. ExPASy TrEMBL
Match: A0A6J1FQE9 (pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111446010 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 9.5e-57
Identity = 117/140 (83.57%), Postives = 123/140 (87.86%), Query Frame = 0 

Query: 224 AIELVDEIRGECIKPNAIIYNPIVDALGEAGSFKEALGMMEQFTVLEQGPTISMYNSLIK 283
           AIELVDE+RGE I+PNAIIYNPIVDALGE+G FKEALGMME+FTVLEQGPTIS YNSLIK
Sbjct: 321 AIELVDEMRGEGIEPNAIIYNPIVDALGESGRFKEALGMMERFTVLEQGPTISTYNSLIK 380

Query: 284 ---------GASKILKSMIGRGFTPTPTTYNYLFRFFSKYGKIEEGMNLYNKMIESGYAP 343
                    GASKILK M+ RGFTPTPTTYNY FRFFSKYGKIEEGMNLYNKMIESGY P
Sbjct: 381 GYCKAGDLSGASKILKLMMNRGFTPTPTTYNYFFRFFSKYGKIEEGMNLYNKMIESGYTP 440

Query: 344 DKLTDHLLLKMLCEEERLNI 355
           DKLT HLLLKMLCEEERLN+
Sbjct: 441 DKLTYHLLLKMLCEEERLNL 460

[Close]
BLAST of CcUC05G099000 vs. ExPASy TrEMBL
Match: A0A5D3E616 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007230 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.1e-56
Identity = 118/140 (84.29%), Postives = 122/140 (87.14%), Query Frame = 0 

Query: 224 AIELVDEIRGECIKPNAIIYNPIVDALGEAGSFKEALGMMEQFTVLEQGPTISMYNSLIK 283
           AIELVDE+R E I+PNAIIYNPIVDALGEAG FKEALGMME+F VLEQGPTIS YNSLIK
Sbjct: 337 AIELVDEMRREGIEPNAIIYNPIVDALGEAGRFKEALGMMERFMVLEQGPTISTYNSLIK 396

Query: 284 ---------GASKILKSMIGRGFTPTPTTYNYLFRFFSKYGKIEEGMNLYNKMIESGYAP 343
                    GASKILK MIGRGFTPTPTTYNY FRFFSKYGKIEE MNLYNKMIESGYAP
Sbjct: 397 GYCKAGDLSGASKILKMMIGRGFTPTPTTYNYFFRFFSKYGKIEESMNLYNKMIESGYAP 456

Query: 344 DKLTDHLLLKMLCEEERLNI 355
           DKLT HLLLKMLCEEERLN+
Sbjct: 457 DKLTYHLLLKMLCEEERLNL 476

[Close]
BLAST of CcUC05G099000 vs. ExPASy TrEMBL
Match: A0A1S3CR47 (pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103503801 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.1e-56
Identity = 118/140 (84.29%), Postives = 122/140 (87.14%), Query Frame = 0 

Query: 224 AIELVDEIRGECIKPNAIIYNPIVDALGEAGSFKEALGMMEQFTVLEQGPTISMYNSLIK 283
           AIELVDE+R E I+PNAIIYNPIVDALGEAG FKEALGMME+F VLEQGPTIS YNSLIK
Sbjct: 321 AIELVDEMRREGIEPNAIIYNPIVDALGEAGRFKEALGMMERFMVLEQGPTISTYNSLIK 380

Query: 284 ---------GASKILKSMIGRGFTPTPTTYNYLFRFFSKYGKIEEGMNLYNKMIESGYAP 343
                    GASKILK MIGRGFTPTPTTYNY FRFFSKYGKIEE MNLYNKMIESGYAP
Sbjct: 381 GYCKAGDLSGASKILKMMIGRGFTPTPTTYNYFFRFFSKYGKIEESMNLYNKMIESGYAP 440

Query: 344 DKLTDHLLLKMLCEEERLNI 355
           DKLT HLLLKMLCEEERLN+
Sbjct: 441 DKLTYHLLLKMLCEEERLNL 460

[Close]
BLAST of CcUC05G099000 vs. ExPASy TrEMBL
Match: A0A0A0LEE0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G878910 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.4e-55
Identity = 115/140 (82.14%), Postives = 122/140 (87.14%), Query Frame = 0 

Query: 224 AIELVDEIRGECIKPNAIIYNPIVDALGEAGSFKEALGMMEQFTVLEQGPTISMYNSLIK 283
           AIELVDE+R E I+PNAI+YNPIVDALGEAG FKEALGMME+F VLEQGPTIS YNSL+K
Sbjct: 321 AIELVDEMRREGIEPNAIVYNPIVDALGEAGRFKEALGMMERFMVLEQGPTISTYNSLVK 380

Query: 284 ---------GASKILKSMIGRGFTPTPTTYNYLFRFFSKYGKIEEGMNLYNKMIESGYAP 343
                    GASKILK MIGRGFTPTPTTYNY FRFFSKYGKIEE M+LYNKMIESGYAP
Sbjct: 381 GYCKAGDLSGASKILKMMIGRGFTPTPTTYNYFFRFFSKYGKIEESMSLYNKMIESGYAP 440

Query: 344 DKLTDHLLLKMLCEEERLNI 355
           DKLT HLLLKMLCEEERLN+
Sbjct: 441 DKLTYHLLLKMLCEEERLNL 460

[Close]
BLAST of CcUC05G099000 vs. TAIR 10
Match: AT5G11310.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 158.7 bits (400), Expect = 8.9e-39
Identity = 77/140 (55.00%), Postives = 106/140 (75.71%), Query Frame = 0 

Query: 224 AIELVDEIRGECIKPNAIIYNPIVDALGEAGSFKEALGMMEQFTVLEQGPTISMYNSLIK 283
           A+E+++E++   ++ N +++NPI+D LGEAG   EALGMME+F V E GPTI  YNSL+K
Sbjct: 304 AMEVLEEMKMAEMEINFMVFNPIIDGLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVK 363

Query: 284 ---------GASKILKSMIGRGFTPTPTTYNYLFRFFSKYGKIEEGMNLYNKMIESGYAP 343
                    GASKILK M+ RG  PT TTYN+ F++FSK+ K EEGMNLY K+IE+G++P
Sbjct: 364 NFCKAGDLPGASKILKMMMTRGVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSP 423

Query: 344 DKLTDHLLLKMLCEEERLNI 355
           D+LT HL+LKMLCE+ +L++
Sbjct: 424 DRLTYHLILKMLCEDGKLSL 443

[Close]
BLAST of CcUC05G099000 vs. TAIR 10
Match: AT3G22470.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 2.0e-14
Identity = 45/139 (32.37%), Postives = 74/139 (53.24%), Query Frame = 0 

Query: 224 AIELVDEIRGECIKPNAIIYNPIVDALGEAGSFKEALGMMEQFTVLEQGPTISMYNSLIK 283
           A++L  ++    IK + + Y+ ++D+L + GSF +AL +  +  +      +  Y+SLI 
Sbjct: 229 ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIG 288

Query: 284 G---------ASKILKSMIGRGFTPTPTTYNYLFRFFSKYGKIEEGMNLYNKMIESGYAP 343
           G          +K+L+ MIGR   P   T++ L   F K GK+ E   LYN+MI  G AP
Sbjct: 289 GLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAP 348

Query: 344 DKLTDHLLLKMLCEEERLN 354
           D +T + L+   C+E  L+
Sbjct: 349 DTITYNSLIDGFCKENCLH 367

[Close]
BLAST of CcUC05G099000 vs. TAIR 10
Match: AT1G06580.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-13
Identity = 43/134 (32.09%), Postives = 71/134 (52.99%), Query Frame = 0 

Query: 223 KAIELVDEIRGECIKPNAIIYNPIVDALGEAGSFKEALGMMEQFTVLEQGPTISMYNSLI 282
           +A+ LVD+I G   +PN +IYN I+D+L E G    AL +++    +   P +  YNSLI
Sbjct: 167 EAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLI 226

Query: 283 KG---------ASKILKSMIGRGFTPTPTTYNYLFRFFSKYGKIEEGMNLYNKMIESGYA 342
                      +++IL  M+  G +P   T++ L   + K G++ E    YN+MI+    
Sbjct: 227 TRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVN 286

Query: 343 PDKLTDHLLLKMLC 348
           P+ +T + L+  LC
Sbjct: 287 PNIVTYNSLINGLC 300

[Close]
BLAST of CcUC05G099000 vs. TAIR 10
Match: AT1G05670.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-13
Identity = 44/143 (30.77%), Postives = 72/143 (50.35%), Query Frame = 0 

Query: 224 AIELVDEIRGECIKPNAIIYNPIVDALGEAGSFKEALGMMEQFTVLEQGPTISMYNSLIK 283
           A EL+ E+    ++PN   YN IV+ L ++G+ +EA+ ++ +F           Y +L+ 
Sbjct: 475 ANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMD 534

Query: 284 G---------ASKILKSMIGRGFTPTPTTYNYLFRFFSKYGKIEEGMNLYNKMIESGYAP 343
                     A +ILK M+G+G  PT  T+N L   F  +G +E+G  L N M+  G AP
Sbjct: 535 AYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAP 594

Query: 344 DKLTDHLLLKMLCEEERLNICSS 358
           +  T + L+K  C    L   ++
Sbjct: 595 NATTFNSLVKQYCIRNNLKAATA 617

[Close]
BLAST of CcUC05G099000 vs. TAIR 10
Match: AT1G05670.2 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-13
Identity = 44/143 (30.77%), Postives = 72/143 (50.35%), Query Frame = 0 

Query: 224 AIELVDEIRGECIKPNAIIYNPIVDALGEAGSFKEALGMMEQFTVLEQGPTISMYNSLIK 283
           A EL+ E+    ++PN   YN IV+ L ++G+ +EA+ ++ +F           Y +L+ 
Sbjct: 475 ANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMD 534

Query: 284 G---------ASKILKSMIGRGFTPTPTTYNYLFRFFSKYGKIEEGMNLYNKMIESGYAP 343
                     A +ILK M+G+G  PT  T+N L   F  +G +E+G  L N M+  G AP
Sbjct: 535 AYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAP 594

Query: 344 DKLTDHLLLKMLCEEERLNICSS 358
           +  T + L+K  C    L   ++
Sbjct: 595 NATTFNSLVKQYCIRNNLKAATA 617

The following BLAST results are available for this feature:
BLAST of CcUC05G099000 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038900116.14.0e-5783.69pentatricopeptide repeat-containing protein At5g11310, mitochondrial-like [Benin... [more]
KAG6608175.12.0e-5683.57Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
XP_022940385.12.0e-5683.57pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Cucurbita ... [more]
XP_022981318.12.0e-5683.57pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Cucurbita ... [more]
KAG7031815.12.0e-5683.57Pentatricopeptide repeat-containing protein, mitochondrial [Cucurbita argyrosper... [more]
BLAST of CcUC05G099000 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LFM61.2e-3755.00Pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Arabidop... [more]
Q6NQ832.8e-1332.37Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidop... [more]
Q0WVK72.4e-1230.77Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidop... [more]
Q9SHK22.4e-1232.09Pentatricopeptide repeat-containing protein At1g06580 OS=Arabidopsis thaliana OX... [more]
Q9CA581.5e-1128.99Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis th... [more]
BLAST of CcUC05G099000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J1S69.5e-5783.57pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Cucurbit... [more]
A0A6J1FQE99.5e-5783.57pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Cucurbit... [more]
A0A5D3E6162.1e-5684.29Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3CR472.1e-5684.29pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Cucumis ... [more]
A0A0A0LEE01.4e-5582.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G878910 PE=4 SV=1[more]
BLAST of CcUC05G099000 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G11310.18.9e-3955.00Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G22470.12.0e-1432.37Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G06580.11.7e-1332.09Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G05670.11.7e-1330.77Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT1G05670.21.7e-1330.77Pentatricopeptide repeat (PPR-like) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 302..347
e-value: 1.2E-7
score: 31.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 303..335
e-value: 3.5E-7
score: 28.0
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 242..265
e-value: 1.1
score: 9.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 300..334
score: 11.432693
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 176..360
e-value: 4.9E-22
score: 80.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..142
NoneNo IPR availablePANTHERPTHR46128MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1coord: 223..352
NoneNo IPR availablePANTHERPTHR46128:SF180PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, MITOCHONDRIALcoord: 223..352

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC05G099000.1CcUC05G099000.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding