CcUC05G094150 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC05G094150
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	CicolChr05: 13335605 .. 13337705 (-)
RNA-Seq Expression	CcUC05G094150
Synteny	CcUC05G094150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTAGTTGTTATACAGAAAAATTTATACATGATTTCAAACTAACTTGCAAAGTTTTATTTTTAAAAAACAATTGAAATTCTTTTTGGGTAAGATTAATGTCGTTGAATTAGTTTAGACACATATAGTTGATTAAAAGATGAGAGATTCAAATTTTACAAAAGAAAAAAAAAAAAAAGAAAGAAAAAATTGAAATTCACACATATATTAGAAAGTAGAACTTGTCAATTATTGATTATTATAATCAATTAGCACTTCAATTTTTTTTCTTTTTTTTTTTTTAATGATATGTGGAGTAGGAGAATCGAATCTGTGATCTTGAGATTGGTAGTATCTATTTGATGCTATATTTATTTTGATTACCTAAACCAATTTTTAGATTAATAAGATCATGTTTGATAACCATTTTGTTTTTGAAAATTAAGTCTATAAACACTACTTCCACCTTTAATTTTTTTCATTTGTTATCTATTTTTACCAATGGTTTAAAACTAAAAAAAAAAAGAAAAAGTAGTTTTTAAAAACTTATTTTTGTCTTTGAAATTTGGCTTAGAATTCTAAGTCAAATAGATGAATCGTACGTTGAGCTTGGGTAATGAAGTCTCAAGCCCAGAATCATCCCTAACAACCTGAGTATACAAAATCCTGGCTAAAGAAAGTCCAATCAGAAAGATTAAAATTGGTGTTACCCTTAACAAGCTATGCAACAGTTTGCTTTTGTGCACGGTACACAAATTCTTGATCTCATTCTGATAGCTAATGGAGTTGTAGCCCTTTGGCGATGTAGCAAGAAACAAGGAGCGGTTATCAAACTTGATATGGAAAAAGCCTTTGACAAACTTAACTGGGATTTCCTACTATCTATGCTCCAAGTAAAAGGCTTCTTGGAAATATGGATTCACTGGATTAAAGCTTGCATTTATTTTGTTAATTATTCAATTATTCTAAATGCCAAACCAAGAGGTTATATCCAAGCAACTAGCCCCCTTCTTATTTATCTTTCTATACTTATCGAATAGGCCAGATAAAGAGATCTCATCTCTGGTTGTCGCTTTGGAAATTAACTCAACCATCTTCTATTTGCTAATGACATATTGCTTTTCTCTAGTGCAGATGTTGAAAAACTCAAGAATCTTCGCTATATTATATCTACTTTTGAAAAGGCTTCAGGATTAAAAATTAACTTCTAGAAATCCTCCTTTTCTATAGTTAATATCGATGCTGATTTCATTGCTCGGGTTGAGAACATCTAGAGCTACCCACCAACCACACTTCCTATTTTTTACTTGGGTATGCCATTAGGGGGAAATCCCCAATCACATGCTTTCCAGCTCCCTATTGTTGAAAAGATTGATAAGAAATTAGACTCTTGGAAATTTTCATACATCTCTAAAGGAGGACGTTTAACTCTACTACAAACATTCTTGGTAACCTTCCTACTTACTATCTATCGTTATTTCAACCTCATGTCTCCATTTACAAAAAAATTGAGAAACTGATGAGGAATTTTCTTTGGGAAGGTTTTGAGAAAAATGGTGCATCACACCTTGTCCGACGGGATGTTGTTACCTCTCCTAAATCTATGGGTGGCTTGGGTATCGACAATCTAAAAGTCACAAATTCTGCTCCATTATGCAAGTAGACATGGAGATATTTAACTGAAAAATAAAATCTCTAGAGGATTGCTATTGATGCCAAGTATAAAGTTGAATGACCGGGATCCTTTCCGAGTATTTGTAGCTACAAAAGCTCAAGATCCCCCTGGCTCAACATTGCCAAACTACAACATTATGTTCTTAATCACACTATCTAGCATATTGTGGATGGTATTGAAGCTCTTTTTTTGTACCAAAATTGGACTAATATTGGTTGTGTCTATCGAACTGTCAGCAGATTTTTTGCTCTGACTAATAAACCGTTGATGTCTATTCAAGATGCTTGGGACTCCAAAACCCATTGTTGGAGGTTATTCCCTCATCGGCCTTTATTACGTAGGGAATTGGAGGCATGGAACTCCCTTACTAGTGGTTGGAGACAGCCAACCATTCCAACCAATCCTACTGATATAGATAAGATTTTTCTGCAATTTATCATCGGA

mRNA sequence

ATGAAATTACATATTGTGGATGGTATTGAAGCTCTTTTTTTGTACCAAAATTGGACTAATATTGGTTGTGTCTATCGAACTGTCAGCAGATTTTTTGCTCTGACTAATAAACCGTTGATGTCTATTCAAGATGCTTGGGACTCCAAAACCCATTGTTGGAGGTTATTCCCTCATCGGCCTTTATTACGTAGGGAATTGGAGGCATGGAACTCCCTTACTAGTGGTTGGAGACAGCCAACCATTCCAACCAATCCTACTGATATAGATAAGATTTTTCTGCAATTTATCATCGGA

Coding sequence (CDS)

ATGAAATTACATATTGTGGATGGTATTGAAGCTCTTTTTTTGTACCAAAATTGGACTAATATTGGTTGTGTCTATCGAACTGTCAGCAGATTTTTTGCTCTGACTAATAAACCGTTGATGTCTATTCAAGATGCTTGGGACTCCAAAACCCATTGTTGGAGGTTATTCCCTCATCGGCCTTTATTACGTAGGGAATTGGAGGCATGGAACTCCCTTACTAGTGGTTGGAGACAGCCAACCATTCCAACCAATCCTACTGATATAGATAAGATTTTTCTGCAATTTATCATCGGA

Protein sequence

MKLHIVDGIEALFLYQNWTNIGCVYRTVSRFFALTNKPLMSIQDAWDSKTHCWRLFPHRPLLRRELEAWNSLTSGWRQPTIPTNPTDIDKIFLQFIIG

Homology

[Close]

BLAST of CcUC05G094150 vs. NCBI nr
Match: TYK19414.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.5e-06
Identity = 32/94 (34.04%), Postives = 41/94 (43.62%), Query Frame = 0


Query: 2   KLHIVDGIEALFLYQNWTNIGCVYRTVSRFFALTNKPLMSIQDAWDSKTHCWRLFPHRPL 61
           KL + +G    F Y NWTN G +Y+   R FAL      +I+D WD     W L   RPL
Sbjct: 68  KLKVNNGGNLSFWYANWTNRGPLYKAFLRMFALATDKNATIKDGWDDTHKTWTLNHRRPL 127

Query: 62  LRRELEAWNSLTSGWRQPTIPTNPTDIDKIFLQF 96
             RE   WN                D+D +FL +
Sbjct: 128 NERETNTWNC--------------EDLDHLFLNY 147

[Close]

BLAST of CcUC05G094150 vs. NCBI nr
Match: KAA0058554.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK01631.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-04
Identity = 30/92 (32.61%), Postives = 41/92 (44.57%), Query Frame = 0


Query: 7   DGIEALFLYQNWTNIGCVYRTVSRFFALTNKPLMSIQDAWDSKTHCWRLFPHRPLLRREL 66
           +G +  F Y NW+  GC+     R FAL+     SI+D W+S  + W +   R L  REL
Sbjct: 731 NGDQISFWYSNWSQEGCLSTAYPRLFALSLDKESSIKDVWNSNNNQWEITFRRKLNDREL 790

Query: 67  EAWNSLTSGW------RQPTIPTNPTDIDKIF 93
             W  +          R P+ PT   D  K F
Sbjct: 791 STWEKILENLPIPRTNRGPSKPTWIPDSKKSF 822

[Close]

BLAST of CcUC05G094150 vs. NCBI nr
Match: TYK19715.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 3.1e-04
Identity = 22/66 (33.33%), Postives = 34/66 (51.52%), Query Frame = 0


Query: 7   DGIEALFLYQNWTNIGCVYRTVSRFFALTNKPLMSIQDAWDSKTHCWRLFPHRPLLRREL 66
           DG    F + NW N   +   + R +AL+N    ++++ WD  T  W + P RPL  RE 
Sbjct: 57  DGSSLSFWHSNWRNNIPLSHQIPRLYALSNLQTATVKEVWDQSTDGWNINPRRPLNDREK 116

Query: 67  EAWNSL 73
           + W S+
Sbjct: 117 QTWESI 122

[Close]

BLAST of CcUC05G094150 vs. ExPASy TrEMBL
Match: A0A5D3D793 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00540 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 32/94 (34.04%), Postives = 41/94 (43.62%), Query Frame = 0


Query: 2   KLHIVDGIEALFLYQNWTNIGCVYRTVSRFFALTNKPLMSIQDAWDSKTHCWRLFPHRPL 61
           KL + +G    F Y NWTN G +Y+   R FAL      +I+D WD     W L   RPL
Sbjct: 68  KLKVNNGGNLSFWYANWTNRGPLYKAFLRMFALATDKNATIKDGWDDTHKTWTLNHRRPL 127

Query: 62  LRRELEAWNSLTSGWRQPTIPTNPTDIDKIFLQF 96
             RE   WN                D+D +FL +
Sbjct: 128 NERETNTWNC--------------EDLDHLFLNY 147

[Close]

BLAST of CcUC05G094150 vs. ExPASy TrEMBL
Match: A0A5A7UTS4 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3840G00080 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 30/92 (32.61%), Postives = 41/92 (44.57%), Query Frame = 0


Query: 7   DGIEALFLYQNWTNIGCVYRTVSRFFALTNKPLMSIQDAWDSKTHCWRLFPHRPLLRREL 66
           +G +  F Y NW+  GC+     R FAL+     SI+D W+S  + W +   R L  REL
Sbjct: 731 NGDQISFWYSNWSQEGCLSTAYPRLFALSLDKESSIKDVWNSNNNQWEITFRRKLNDREL 790

Query: 67  EAWNSLTSGW------RQPTIPTNPTDIDKIF 93
             W  +          R P+ PT   D  K F
Sbjct: 791 STWEKILENLPIPRTNRGPSKPTWIPDSKKSF 822

[Close]

BLAST of CcUC05G094150 vs. ExPASy TrEMBL
Match: A0A5D3D823 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold214G00130 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-04
Identity = 22/66 (33.33%), Postives = 34/66 (51.52%), Query Frame = 0


Query: 7   DGIEALFLYQNWTNIGCVYRTVSRFFALTNKPLMSIQDAWDSKTHCWRLFPHRPLLRREL 66
           DG    F + NW N   +   + R +AL+N    ++++ WD  T  W + P RPL  RE 
Sbjct: 57  DGSSLSFWHSNWRNNIPLSHQIPRLYALSNLQTATVKEVWDQSTDGWNINPRRPLNDREK 116

Query: 67  EAWNSL 73
           + W S+
Sbjct: 117 QTWESI 122

The following BLAST results are available for this feature:

BLAST of CcUC05G094150 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK19414.1	2.5e-06	34.04	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0058554.1	2.4e-04	32.61	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK016...	[more]
TYK19715.1	3.1e-04	33.33	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of CcUC05G094150 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC05G094150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D793	1.2e-06	34.04	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7UTS4	1.1e-04	32.61	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3D823	1.5e-04	33.33	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of CcUC05G094150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC05G094150.1	CcUC05G094150.1	mRNA