CcUC05G088660 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC05G088660
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr05: 6235453 .. 6235779 (+)
RNA-Seq ExpressionCcUC05G088660
SyntenyCcUC05G088660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCATCTTCTTCATCTCAATTGCCAACTCCAAGAACACCAAATAATAATGAGTTGTGAGAATCCCACTTCCAGAGCTTTCGATCCCGCCGCCACGACCAGCGGAAATCAACCGATGAAGGCGGAGAAAAACTCGAACTCAAAAGCCGCCGCGGTCAGCTCCAATATGGGGAAGGCTTTGGCAGAGAGAGCAGTTTATGGATCCCAACAGCGGCGGACCGGAAGAAGAAGAAGAAACCTCATCCATGACCAAGGCATTCGACTGCTGCCTAGTAGGCTCAGCAAAGTGTCTTTAGCTGATCATAATTCCTCACCCTCTGATTAA

mRNA sequence

ATGTTTCATCTTCTTCATCTCAATTGCCAACTCCAAGAACACCAAATAATAATGAGTTGTGAGAATCCCACTTCCAGAGCTTTCGATCCCGCCGCCACGACCAGCGGAAATCAACCGATGAAGGCGGAGAAAAACTCGAACTCAAAAGCCGCCGCGGTCAGCTCCAATATGGGGAAGGCTTTGGCAGAGAGAGCAGTTTATGGATCCCAACAGCGGCGGACCGGAAGAAGAAGAAGAAACCTCATCCATGACCAAGGCATTCGACTGCTGCCTAGTAGGCTCAGCAAAGTGTCTTTAGCTGATCATAATTCCTCACCCTCTGATTAA

Coding sequence (CDS)

ATGTTTCATCTTCTTCATCTCAATTGCCAACTCCAAGAACACCAAATAATAATGAGTTGTGAGAATCCCACTTCCAGAGCTTTCGATCCCGCCGCCACGACCAGCGGAAATCAACCGATGAAGGCGGAGAAAAACTCGAACTCAAAAGCCGCCGCGGTCAGCTCCAATATGGGGAAGGCTTTGGCAGAGAGAGCAGTTTATGGATCCCAACAGCGGCGGACCGGAAGAAGAAGAAGAAACCTCATCCATGACCAAGGCATTCGACTGCTGCCTAGTAGGCTCAGCAAAGTGTCTTTAGCTGATCATAATTCCTCACCCTCTGATTAA

Protein sequence

MFHLLHLNCQLQEHQIIMSCENPTSRAFDPAATTSGNQPMKAEKNSNSKAAAVSSNMGKALAERAVYGSQQRRTGRRRRNLIHDQGIRLLPSRLSKVSLADHNSSPSD
Homology
BLAST of CcUC05G088660 vs. NCBI nr
Match: KGN57150.1 (hypothetical protein Csa_011148 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 3.6e-22
Identity = 73/98 (74.49%), Postives = 77/98 (78.57%), Query Frame = 0

Query: 22  NPTSRAFDPAATTSGNQ-PMKAEKNSNSKAA-------AVSSNMGKALAERAVYGSQQRR 81
           N  S AFDPAATT G Q P KAEKN NSKA+       A S+N+GKALAERAVYGSQQRR
Sbjct: 9   NSRSSAFDPAATTGGIQPPTKAEKNPNSKASTATATATAASNNVGKALAERAVYGSQQRR 68

Query: 82  TGRRRRNLIHDQG-IRLLPSRLSKVSLADH--NSSPSD 109
           TGRRRRNLIH+ G  RLLPSRLSKVSLADH  NSSPSD
Sbjct: 69  TGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD 106

BLAST of CcUC05G088660 vs. NCBI nr
Match: KAA0049530.1 (hypothetical protein E6C27_scaffold171G007850 [Cucumis melo var. makuwa] >TYK16208.1 hypothetical protein E5676_scaffold209G001370 [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 5.2e-21
Identity = 70/94 (74.47%), Postives = 75/94 (79.79%), Query Frame = 0

Query: 22  NPTSRAFDPAATTSGNQPMKAEKNSNSKAA----AVSSNMGKALAERAVYGSQQRRTGRR 81
           N  S AFDPA+TT G QP  AEKN NSKAA    A S+NMGKALAERAVYG+QQRRTGRR
Sbjct: 9   NSRSSAFDPASTTGGIQP--AEKNPNSKAATAATAASNNMGKALAERAVYGTQQRRTGRR 68

Query: 82  RRNLIHDQG-IRLLPSRLSKVSLADH--NSSPSD 109
           RRNLIH+ G IRLLPS LS+VSLADH  NS PSD
Sbjct: 69  RRNLIHEHGAIRLLPSTLSRVSLADHHYNSPPSD 100

BLAST of CcUC05G088660 vs. NCBI nr
Match: KAG6597562.1 (hypothetical protein SDJN03_10742, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.3 bits (251), Expect = 5.4e-18
Identity = 67/96 (69.79%), Postives = 74/96 (77.08%), Query Frame = 0

Query: 18  MSCENPTSRAFDPAAT-----TSGNQPMKAEKNSNSKAAAVSSNMGKALAERAVYGSQQR 77
           MS E P SR FDPA T      +GNQP K EKN +SKAAA SSN+GKALA RAVYG+Q+R
Sbjct: 1   MSSERPDSRGFDPAITMPATGVTGNQPTKPEKNPSSKAAA-SSNVGKALAHRAVYGAQKR 60

Query: 78  RTGRRRRNLIHDQGIRLLPSRLSKVSLADHNSSPSD 109
            TG RRRN +H  G+RLLPSRLSKVSLAD NSSPSD
Sbjct: 61  WTG-RRRNPVH--GVRLLPSRLSKVSLAD-NSSPSD 91

BLAST of CcUC05G088660 vs. NCBI nr
Match: KAG2726969.1 (hypothetical protein I3760_01G138000 [Carya illinoinensis])

HSP 1 Score: 63.9 bits (154), Expect = 9.6e-07
Identity = 42/87 (48.28%), Postives = 56/87 (64.37%), Query Frame = 0

Query: 18  MSCENPTSRAFDPAATTSGNQPMKAEKNSNSKAAAVSSNMGKALAERAVYGSQQRRTGRR 77
           M+ E   +   D  A TS NQ    +K  ++K AA +SN+GKALA+RA+YGS  RR G R
Sbjct: 1   MASEKANANGSDLDARTSSNQATTIDKKPDTKGAA-NSNLGKALAQRALYGSHNRRVGGR 60

Query: 78  RRNLIHDQGIRLLPSRLSKVSLADHNS 105
           +   I + G RLLPSRLSKVSL + ++
Sbjct: 61  K---ITNSGARLLPSRLSKVSLGEDSA 83

BLAST of CcUC05G088660 vs. NCBI nr
Match: KAG6668024.1 (hypothetical protein CIPAW_01G142300 [Carya illinoinensis])

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-06
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 0

Query: 18  MSCENPTSRAFDPAATTSGNQPMKAEKNSNSKAAAVSSNMGKALAERAVYGSQQRRTGRR 77
           M+ E   +   D  A TS NQ    +K  ++K  A +SN+GKALA+RA+YGS  RR G R
Sbjct: 1   MASEKANANGSDLDARTSSNQATTIDKKPDTKGTA-NSNLGKALAQRALYGSHNRRVGGR 60

Query: 78  RRNLIHDQGIRLLPSRLSKVSLADHNS 105
           +   + + G RLLPSRLSKVSL + ++
Sbjct: 61  K---VTNSGARLLPSRLSKVSLGEDSA 83

BLAST of CcUC05G088660 vs. ExPASy TrEMBL
Match: A0A0A0L5C0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G165670 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.8e-22
Identity = 73/98 (74.49%), Postives = 77/98 (78.57%), Query Frame = 0

Query: 22  NPTSRAFDPAATTSGNQ-PMKAEKNSNSKAA-------AVSSNMGKALAERAVYGSQQRR 81
           N  S AFDPAATT G Q P KAEKN NSKA+       A S+N+GKALAERAVYGSQQRR
Sbjct: 9   NSRSSAFDPAATTGGIQPPTKAEKNPNSKASTATATATAASNNVGKALAERAVYGSQQRR 68

Query: 82  TGRRRRNLIHDQG-IRLLPSRLSKVSLADH--NSSPSD 109
           TGRRRRNLIH+ G  RLLPSRLSKVSLADH  NSSPSD
Sbjct: 69  TGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD 106

BLAST of CcUC05G088660 vs. ExPASy TrEMBL
Match: A0A5A7U2I2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001370 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.5e-21
Identity = 70/94 (74.47%), Postives = 75/94 (79.79%), Query Frame = 0

Query: 22  NPTSRAFDPAATTSGNQPMKAEKNSNSKAA----AVSSNMGKALAERAVYGSQQRRTGRR 81
           N  S AFDPA+TT G QP  AEKN NSKAA    A S+NMGKALAERAVYG+QQRRTGRR
Sbjct: 9   NSRSSAFDPASTTGGIQP--AEKNPNSKAATAATAASNNMGKALAERAVYGTQQRRTGRR 68

Query: 82  RRNLIHDQG-IRLLPSRLSKVSLADH--NSSPSD 109
           RRNLIH+ G IRLLPS LS+VSLADH  NS PSD
Sbjct: 69  RRNLIHEHGAIRLLPSTLSRVSLADHHYNSPPSD 100

BLAST of CcUC05G088660 vs. ExPASy TrEMBL
Match: B9RNI0 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1348020 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.9e-06
Identity = 37/68 (54.41%), Postives = 41/68 (60.29%), Query Frame = 0

Query: 34  TSGNQPMKAEKNSNSKAAAVSSNMGKALAERAVYGSQQRRTGRRRRNLIHDQGIRLLPSR 93
           T GNQ   AE +SNSK        GKALA RA+YGS  RR G R+   + D   R LPSR
Sbjct: 15  TDGNQEKSAESSSNSKEFTAPPRFGKALAHRALYGSSSRRAGSRK---VRDNDTRTLPSR 74

Query: 94  LSKVSLAD 102
           LS VSLAD
Sbjct: 75  LSNVSLAD 79

BLAST of CcUC05G088660 vs. ExPASy TrEMBL
Match: A0A5C7IRA7 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_000217 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 44/91 (48.35%), Postives = 59/91 (64.84%), Query Frame = 0

Query: 18  MSCENPTS---RAFDPAATTSGNQPMKAEKNSNSKAAAVSSNMGKALAERAVYGSQQRRT 77
           M  EN  S    A D  A+TS NQ ++     N+K AA +SN+GKALA RA+ GSQ RR+
Sbjct: 1   MQRENMASEKGNARDLEASTSSNQVIQ----PNTKGAASNSNVGKALARRALSGSQNRRS 60

Query: 78  GRRRRNLIHDQGIRLLPSRLSKVSLADHNSS 106
             R+   + + G R+LPSRLSKVSLA+ +S+
Sbjct: 61  HGRK---VANSGARMLPSRLSKVSLAEEDST 84

BLAST of CcUC05G088660 vs. ExPASy TrEMBL
Match: A0A803Q4Y8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.6e-04
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 0

Query: 24  TSRAFDPAATTSGNQPMK-AEKNSNSKAAAVS-SNMGKALAERAVYGSQQRRTGRRRRNL 83
           +S+A +   +TS +Q M   EK  N+K +  S SNM KAL +RA++GS+  R G  RRN 
Sbjct: 3   SSKANEACTSTSTSQVMSMQEKKPNTKGSTSSNSNMEKALVKRALFGSRHHRHGGGRRN- 62

Query: 84  IHDQGIRLLPSRLSKVSLADHNS 105
             + G+R LPSRLSKVSLAD  +
Sbjct: 63  -SNSGVRSLPSRLSKVSLADEQA 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN57150.13.6e-2274.49hypothetical protein Csa_011148 [Cucumis sativus][more]
KAA0049530.15.2e-2174.47hypothetical protein E6C27_scaffold171G007850 [Cucumis melo var. makuwa] >TYK162... [more]
KAG6597562.15.4e-1869.79hypothetical protein SDJN03_10742, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG2726969.19.6e-0748.28hypothetical protein I3760_01G138000 [Carya illinoinensis][more]
KAG6668024.13.6e-0645.98hypothetical protein CIPAW_01G142300 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L5C01.8e-2274.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G165670 PE=4 SV=1[more]
A0A5A7U2I22.5e-2174.47Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
B9RNI03.9e-0654.41Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1348020 PE=4 SV=1[more]
A0A5C7IRA71.1e-0548.35Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_000217 PE=4 SV=1[more]
A0A803Q4Y81.6e-0448.19Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC05G088660.1CcUC05G088660.1mRNA