Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAGACGTGAAAAGGCAGTCAAAAAAAAGAAATAAAAAGATAATTGTGGATTGGATATTATTTAAATAATAATAATAATAAATTTAAAAATCAAATTTTCCTTATTGGCACTCGCCAAATGAAAAGTCTAATTTATTCCCATTGTGAAAATTTTCAAAATGTTAGGAAAAGAAATCAATTTCTGAATATTTTCCTAATAAAATATTAAATTCAATGAATTTGAATCGAGACGGCCGGTTTAAACCGGCCGGTTCTAAATAGTAGAAAAATCGTTACGTACCCCACAGCCGGTGTCAACGGCAGTTCTGATGGATCCGTCGGCGAGATTGATCAATTTTCCGATATCGTCGATATAGGCGTCGGCGCCACGAGGGAACATAGTACCGCCGCCGGGAAATCTGAACCGGTCGTTCTCAAACCGGACCCAATTCTGATTCTTCTTCTCCACCGTCAATTCCTTATGCGGAACATTCGAAAACCAGGCGAAATCCCGGCTCTCCGGCCATCTAAACGGCACCTTGTAGCCGGCGGGCGCCGGAATCCGGCACTTCAGAATCTCGCCGGCTTCCGGGCAGTGCCTCTCTCTGTAAATCAATCGGTCCCTGTCGAATTTGAGCGACCTTTCTCGGTCTTCACAGGGGGTGTATTCATAGAGCTTCGGGTCGCACGGCGGGAGGTTAGGGCGACGCGCTTTCTGGACAACCGGAAGGTCGTCGGCGGTGTGATGGGCGGCGAAATCGAGGTCGACGACGGCCGTAACAGTGGAATTATGGAAGGCGGCAGCTTTAGTTGTCGTACATGCGTAATTTCCGCCGGCGAATAA
mRNA sequence
ATGCTAGACACGGCCGGTTTAAACCGGCCGGTTCTAAATAGTAGAAAAATCGTTACGTACCCCACAGCCGGTGTCAACGGCAGTTCTGATGGATCCGTCGGCGAGATTGATCAATTTTCCGATATCGTCGATATAGGCGTCGGCGCCACGAGGGAACATAGTACCGCCGCCGGGAAATCTGAACCGGTCGTTCTCAAACCGGACCCAATTCTGATTCTTCTTCTCCACCGTCAATTCCTTATGCGGAACATTCGAAAACCAGGCGAAATCCCGGCTCTCCGGCCATCTAAACGGCACCTTGTAGCCGGCGGGCGCCGGAATCCGGCACTTCAGAATCTCGCCGGCTTCCGGGCAGTGCCTCTCTCTGTAAATCAATCGGTCCCTGTCGAATTTGAGCGACCTTTCTCGGTCTTCACAGGGGGTGTATTCATAGAGCTTCGGGTCGCACGGCGGGAGGTTAGGGCGACGCGCTTTCTGGACAACCGGAAGGTCGTCGGCGGTGTGATGGGCGGCGAAATCGAGGTCGACGACGGCCGTAACAGTGGAATTATGGAAGGCGGCAGCTTTAGTTGTCGTACATGCGTAATTTCCGCCGGCGAATAA
Coding sequence (CDS)
ATGCTAGACACGGCCGGTTTAAACCGGCCGGTTCTAAATAGTAGAAAAATCGTTACGTACCCCACAGCCGGTGTCAACGGCAGTTCTGATGGATCCGTCGGCGAGATTGATCAATTTTCCGATATCGTCGATATAGGCGTCGGCGCCACGAGGGAACATAGTACCGCCGCCGGGAAATCTGAACCGGTCGTTCTCAAACCGGACCCAATTCTGATTCTTCTTCTCCACCGTCAATTCCTTATGCGGAACATTCGAAAACCAGGCGAAATCCCGGCTCTCCGGCCATCTAAACGGCACCTTGTAGCCGGCGGGCGCCGGAATCCGGCACTTCAGAATCTCGCCGGCTTCCGGGCAGTGCCTCTCTCTGTAAATCAATCGGTCCCTGTCGAATTTGAGCGACCTTTCTCGGTCTTCACAGGGGGTGTATTCATAGAGCTTCGGGTCGCACGGCGGGAGGTTAGGGCGACGCGCTTTCTGGACAACCGGAAGGTCGTCGGCGGTGTGATGGGCGGCGAAATCGAGGTCGACGACGGCCGTAACAGTGGAATTATGGAAGGCGGCAGCTTTAGTTGTCGTACATGCGTAATTTCCGCCGGCGAATAA
Protein sequence
MLDTAGLNRPVLNSRKIVTYPTAGVNGSSDGSVGEIDQFSDIVDIGVGATREHSTAAGKSEPVVLKPDPILILLLHRQFLMRNIRKPGEIPALRPSKRHLVAGGRRNPALQNLAGFRAVPLSVNQSVPVEFERPFSVFTGGVFIELRVARREVRATRFLDNRKVVGGVMGGEIEVDDGRNSGIMEGGSFSCRTCVISAGE
Homology
BLAST of CcUC05G082930 vs. NCBI nr
Match:
KAB8101017.1 (hypothetical protein EE612_031686, partial [Oryza sativa])
HSP 1 Score: 88.6 bits (218), Expect = 6.7e-14
Identity = 63/169 (37.28%), Postives = 85/169 (50.30%), Query Frame = 0
Query: 22 TAGVNGSSDGSVG---EIDQFSDIVDIGVGATREHSTAAGKSEPVVLKPDPILILLLHRQ 81
T+GV D + + + D+VD+ VGA REH AAG++E V + PDP+L LL Q
Sbjct: 45 TSGVQRRPDRAAAAQRDAGRRGDVVDVPVGAVREHGPAAGEAEHVAVPPDPVLHALLRHQ 104
Query: 82 FLMRNIRKPGEIPALRPSKRHLVAGGRRNPALQNLAGFRAVPLSVNQSVPVEFERPFSVF 141
L+R +R P + A RP +R VA RR+ A L AVPL V + P +RP
Sbjct: 105 LLVRRVRVPRRVAAPRPPERRAVAPRRRDEAPPPLGRRGAVPLPVREPPPRLAQRPPLPL 164
Query: 142 TGGVFIELRVARREVRATRFLDNRKVVGGVMGGEIEVDDGRNSGIMEGG 188
GV RVARR+ R R +G V+ G VD G++ G
Sbjct: 165 ARGVLRVPRVARRDAARRR----RPRLGRVLLGRAVVDREVEGGVVLRG 209
BLAST of CcUC05G082930 vs. NCBI nr
Match:
KAB8115789.1 (hypothetical protein EE612_056534, partial [Oryza sativa])
HSP 1 Score: 88.2 bits (217), Expect = 8.8e-14
Identity = 59/152 (38.82%), Postives = 80/152 (52.63%), Query Frame = 0
Query: 6 GLNRPVLNSRKIVTYPTAGVNGSSDGSVGEIDQFSDIVDIGVGATREHSTAAGKSEPVVL 65
G + P + R + AGV +DG+VGE D ++VD+ VGA E AAG++E L
Sbjct: 61 GDHPPRVQVRAQARHAAAGVEDGADGAVGEGDDGGELVDVLVGAAGELGAAAGEAEEAAL 120
Query: 66 KPDPILILLLHRQFLMRNIRKPGEIPALRPSKRHLVAGGRRNPALQNLAGFRAVPLSVNQ 125
P+L LLH + L+R +R+ + A RP +R V RR+ A Q LA AVPL V+
Sbjct: 121 VSHPVLHRLLHGEALVRRVRERHVVAAPRPRERRHVPRRRRHQAPQPLAVAGAVPLPVHH 180
Query: 126 SVPVEFERPFSVFTGGVFIELRVARREVRATR 158
+P E R V V R ARRE+R R
Sbjct: 181 VLPREPHRALLVVARRVVRHRRRARRELRRRR 212
BLAST of CcUC05G082930 vs. NCBI nr
Match:
BAT14756.1 (Os11g0601650, partial [Oryza sativa Japonica Group])
HSP 1 Score: 88.2 bits (217), Expect = 8.8e-14
Identity = 59/152 (38.82%), Postives = 80/152 (52.63%), Query Frame = 0
Query: 6 GLNRPVLNSRKIVTYPTAGVNGSSDGSVGEIDQFSDIVDIGVGATREHSTAAGKSEPVVL 65
G + P + R + AGV +DG+VGE D ++VD+ VGA E AAG++E L
Sbjct: 61 GDHPPRVQVRAQARHAAAGVEDGADGAVGEGDDGGELVDVLVGAAGELGAAAGEAEEAAL 120
Query: 66 KPDPILILLLHRQFLMRNIRKPGEIPALRPSKRHLVAGGRRNPALQNLAGFRAVPLSVNQ 125
P+L LLH + L+R +R+ + A RP +R V RR+ A Q LA AVPL V+
Sbjct: 121 VSHPVLHRLLHGEALVRRVRERHVVAAPRPRERRHVPRRRRHQAPQPLAVAGAVPLPVHH 180
Query: 126 SVPVEFERPFSVFTGGVFIELRVARREVRATR 158
+P E R V V R ARRE+R R
Sbjct: 181 VLPREPHRALLVVARRVVRHRRRARRELRRRR 212
BLAST of CcUC05G082930 vs. NCBI nr
Match:
BAS95945.1 (Os06g0128150, partial [Oryza sativa Japonica Group])
HSP 1 Score: 88.2 bits (217), Expect = 8.8e-14
Identity = 63/169 (37.28%), Postives = 85/169 (50.30%), Query Frame = 0
Query: 22 TAGVNGSSDGSVG---EIDQFSDIVDIGVGATREHSTAAGKSEPVVLKPDPILILLLHRQ 81
T+GV D + + + D+VD+ VGA REH AAG++E V + PDP+L LL Q
Sbjct: 45 TSGVQRRPDRAAAAQRDAGRRGDVVDVPVGAVREHGPAAGEAEHVAVPPDPVLHALLRHQ 104
Query: 82 FLMRNIRKPGEIPALRPSKRHLVAGGRRNPALQNLAGFRAVPLSVNQSVPVEFERPFSVF 141
L+R +R P + A RP +R VA RR+ A L AVPL V + P +RP
Sbjct: 105 LLVRRVRVPRRVAAPRPPERRAVAPRRRDEAPPPLGRRGAVPLPVREPPPRLAQRPPLPL 164
Query: 142 TGGVFIELRVARREVRATRFLDNRKVVGGVMGGEIEVDDGRNSGIMEGG 188
GV RVARR+ R R +G V+ G VD G++ G
Sbjct: 165 ARGVLRVPRVARRDAARWR----RPRLGRVLLGRAVVDREVEGGVVLRG 209
BLAST of CcUC05G082930 vs. NCBI nr
Match:
KAB8096544.1 (hypothetical protein EE612_025028, partial [Oryza sativa] >BAS90571.1 Os04g0570850, partial [Oryza sativa Japonica Group])
HSP 1 Score: 87.8 bits (216), Expect = 1.1e-13
Identity = 57/152 (37.50%), Postives = 80/152 (52.63%), Query Frame = 0
Query: 11 VLNSRKIVTYPTAGVNGSSDGSVGEIDQFSDIVDIGVGATREHSTAAGKSEPVVLKPDPI 70
V S + + P G +DGS+ E D +D+VD+ GA EH AAG+ E DP+
Sbjct: 35 VTASMRPSSLPATSGRGGADGSIVEGDDLADVVDVRAGAVGEHGAAAGEPELFAFDADPV 94
Query: 71 LILLLHRQFLMRNIRKPGEIPALRPSKRHLVAGGRRNPALQNLAGFRAVPLSVNQSVPVE 130
L LL + L+R++ +P ++ A RP +R V GRR+ A + LA RAVPL V++ VP E
Sbjct: 95 LHRLLDGELLVRHVGEPRDVAAGRPRERVAVPLGRRHEAPEPLALRRAVPLPVHEPVPRE 154
Query: 131 FERPFSVFTG---GVFIELRVARREVRATRFL 160
+R V GV R+ R A R L
Sbjct: 155 PQRALDVLARRVLGVLGRARLVRAVHLARRHL 186
BLAST of CcUC05G082930 vs. ExPASy TrEMBL
Match:
A0A0P0Y403 (Os11g0601650 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0601650 PE=4 SV=1)
HSP 1 Score: 88.2 bits (217), Expect = 4.2e-14
Identity = 59/152 (38.82%), Postives = 80/152 (52.63%), Query Frame = 0
Query: 6 GLNRPVLNSRKIVTYPTAGVNGSSDGSVGEIDQFSDIVDIGVGATREHSTAAGKSEPVVL 65
G + P + R + AGV +DG+VGE D ++VD+ VGA E AAG++E L
Sbjct: 61 GDHPPRVQVRAQARHAAAGVEDGADGAVGEGDDGGELVDVLVGAAGELGAAAGEAEEAAL 120
Query: 66 KPDPILILLLHRQFLMRNIRKPGEIPALRPSKRHLVAGGRRNPALQNLAGFRAVPLSVNQ 125
P+L LLH + L+R +R+ + A RP +R V RR+ A Q LA AVPL V+
Sbjct: 121 VSHPVLHRLLHGEALVRRVRERHVVAAPRPRERRHVPRRRRHQAPQPLAVAGAVPLPVHH 180
Query: 126 SVPVEFERPFSVFTGGVFIELRVARREVRATR 158
+P E R V V R ARRE+R R
Sbjct: 181 VLPREPHRALLVVARRVVRHRRRARRELRRRR 212
BLAST of CcUC05G082930 vs. ExPASy TrEMBL
Match:
A0A0N7KLG4 (Os06g0128150 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0128150 PE=4 SV=1)
HSP 1 Score: 88.2 bits (217), Expect = 4.2e-14
Identity = 63/169 (37.28%), Postives = 85/169 (50.30%), Query Frame = 0
Query: 22 TAGVNGSSDGSVG---EIDQFSDIVDIGVGATREHSTAAGKSEPVVLKPDPILILLLHRQ 81
T+GV D + + + D+VD+ VGA REH AAG++E V + PDP+L LL Q
Sbjct: 45 TSGVQRRPDRAAAAQRDAGRRGDVVDVPVGAVREHGPAAGEAEHVAVPPDPVLHALLRHQ 104
Query: 82 FLMRNIRKPGEIPALRPSKRHLVAGGRRNPALQNLAGFRAVPLSVNQSVPVEFERPFSVF 141
L+R +R P + A RP +R VA RR+ A L AVPL V + P +RP
Sbjct: 105 LLVRRVRVPRRVAAPRPPERRAVAPRRRDEAPPPLGRRGAVPLPVREPPPRLAQRPPLPL 164
Query: 142 TGGVFIELRVARREVRATRFLDNRKVVGGVMGGEIEVDDGRNSGIMEGG 188
GV RVARR+ R R +G V+ G VD G++ G
Sbjct: 165 ARGVLRVPRVARRDAARWR----RPRLGRVLLGRAVVDREVEGGVVLRG 209
BLAST of CcUC05G082930 vs. ExPASy TrEMBL
Match:
A0A0P0WDN0 (Os04g0570850 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0570850 PE=4 SV=1)
HSP 1 Score: 87.8 bits (216), Expect = 5.5e-14
Identity = 57/152 (37.50%), Postives = 80/152 (52.63%), Query Frame = 0
Query: 11 VLNSRKIVTYPTAGVNGSSDGSVGEIDQFSDIVDIGVGATREHSTAAGKSEPVVLKPDPI 70
V S + + P G +DGS+ E D +D+VD+ GA EH AAG+ E DP+
Sbjct: 35 VTASMRPSSLPATSGRGGADGSIVEGDDLADVVDVRAGAVGEHGAAAGEPELFAFDADPV 94
Query: 71 LILLLHRQFLMRNIRKPGEIPALRPSKRHLVAGGRRNPALQNLAGFRAVPLSVNQSVPVE 130
L LL + L+R++ +P ++ A RP +R V GRR+ A + LA RAVPL V++ VP E
Sbjct: 95 LHRLLDGELLVRHVGEPRDVAAGRPRERVAVPLGRRHEAPEPLALRRAVPLPVHEPVPRE 154
Query: 131 FERPFSVFTG---GVFIELRVARREVRATRFL 160
+R V GV R+ R A R L
Sbjct: 155 PQRALDVLARRVLGVLGRARLVRAVHLARRHL 186
BLAST of CcUC05G082930 vs. ExPASy TrEMBL
Match:
A0A314KZF2 (Putative methyltransferase pmt16 OS=Nicotiana attenuata OX=49451 GN=A4A49_23866 PE=4 SV=1)
HSP 1 Score: 82.8 bits (203), Expect = 1.8e-12
Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = 0
Query: 20 YPTAGVNGSSDGSVGEIDQFSDIVDIGVGATREHSTAAGKSEPVVLKPDPILILLLHRQF 79
YPT G+NG +G++ ++DQ +IV+I +G+ EH AAG+ EPV+LKPDPIL +R+
Sbjct: 22 YPTTGINGGPNGAIFKLDQVPNIVNISIGSKWEHGAAAGEREPVILKPDPILTGFHNRKM 81
Query: 80 LMRNIRKPGEIPALRPSKRHLV 102
M NIR P + RP +R +
Sbjct: 82 FMWNIRIPNRVTTFRPPERRFI 103
BLAST of CcUC05G082930 vs. ExPASy TrEMBL
Match:
A0A5A7PRP2 (Sodium channel protein OS=Striga asiatica OX=4170 GN=STAS_11742 PE=4 SV=1)
HSP 1 Score: 74.7 bits (182), Expect = 4.9e-10
Identity = 56/169 (33.14%), Postives = 85/169 (50.30%), Query Frame = 0
Query: 23 AGVNGSSDGSVGEIDQFSDIVDIGVGATREHSTAAGKSEPVVLKPDPILILLLHRQFLMR 82
+ +N S + + ++ ++IV+I VG R+HS ++ K EPV L +P+L LL+ Q L+R
Sbjct: 35 SSINCSPYAPISQRNKSTNIVNIRVGPARKHSASSRKPEPVPLDLNPVLNSLLNTQLLVR 94
Query: 83 NIRKPGEIPALRPSKRHLVAGGRRNPALQNLAGFRAVPLSVNQSVPVEFERPFSVFTGGV 142
IR P IPAL P K L+ R+ Q L RAVP V + VPVE VF V
Sbjct: 95 YIRVPRVIPALWPFKGALIVRWGRDKTPQQLVFRRAVPFPVLEHVPVELPASLLVFARSV 154
Query: 143 F-IELRVARREVRATRFLDNRKVVGGVMGGEIEVDDGRNSGIMEGGSFS 191
V E+ A+ + ++ G++ + +D +M SFS
Sbjct: 155 LGRNFSVESEELTASWWWVSKSSWSGIIDEVADEEDCGRWVLMFSFSFS 203
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAB8101017.1 | 6.7e-14 | 37.28 | hypothetical protein EE612_031686, partial [Oryza sativa] | [more] |
| KAB8115789.1 | 8.8e-14 | 38.82 | hypothetical protein EE612_056534, partial [Oryza sativa] | [more] |
| BAT14756.1 | 8.8e-14 | 38.82 | Os11g0601650, partial [Oryza sativa Japonica Group] | [more] |
| BAS95945.1 | 8.8e-14 | 37.28 | Os06g0128150, partial [Oryza sativa Japonica Group] | [more] |
| KAB8096544.1 | 1.1e-13 | 37.50 | hypothetical protein EE612_025028, partial [Oryza sativa] >BAS90571.1 Os04g05708... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0P0Y403 | 4.2e-14 | 38.82 | Os11g0601650 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os11... | [more] |
| A0A0N7KLG4 | 4.2e-14 | 37.28 | Os06g0128150 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os06... | [more] |
| A0A0P0WDN0 | 5.5e-14 | 37.50 | Os04g0570850 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os04... | [more] |
| A0A314KZF2 | 1.8e-12 | 45.12 | Putative methyltransferase pmt16 OS=Nicotiana attenuata OX=49451 GN=A4A49_23866 ... | [more] |
| A0A5A7PRP2 | 4.9e-10 | 33.14 | Sodium channel protein OS=Striga asiatica OX=4170 GN=STAS_11742 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
