CcUC05G082600 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC05G082600
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	RNA polymerase I-specific transcription initiation factor RRN3
Location	CicolChr05: 1437387 .. 1446415 (+)
RNA-Seq Expression	CcUC05G082600
Synteny	CcUC05G082600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCCAACTTTCTTCATTCCCATTCGCCGTCGGCTGCTACTCTCTCTCTCTCAGTCCTCGTTCGTCATCGGTCTTTCTTCACCGCCGTTCGCGCCGTCGCCGTTCGACGGTCGCATTCCACATCGGTCTCTCTTCTCCGCCTTTTGACGTTGGAGCTGGTTTCGTTGGATCTCAATCTAACCCACTTGTTTCAGGTTCGTCTTCTTCATTCTCTGAGCTATCGAACTATTTTTGTGGCTATTTTACCTTTTGTGATTGTGGATTCTGGGTTCTTAGTGTGTGTGTGCGTCCGCGCGTGTGTGTGGCTATTTCGGTTTTCGCGATCGTCGGAGCTGGTCGAACAAGAATTAGAGTAAAGGGCTTTTGTTAAGCGTTTAACATTTTTGTTAAAATATTCAATTTCGTCGATATTTTTATGTTTTCGAAGTTCCCAAATTCATTCAATTTGAGGATTATTTTATCATTATTATTATTTTTGGTAGAGTACTCTGTAGCTCCTTGGTGTAAAATGTATTTGAGATATAACGCGTCCCTAAGGCGTCGTATCCTAATTTTTTTGGGAATTGTTGCGTCAGTGTTTGTGCTTCTTGGGCAAGAATGTACCGGACACTTAAAGTCTATCGACGTTGCAATGGGACTAGTGATGTTTCTGCATTAGTTCATGCATGTTTTAAAACTTTTTTCATGTTTTTATTTAAGTTCTAGAACTAGCAGTTTTGCTCTCATTTTGATAATTCTCCCTTTTAAATGTTTCTTCGATATCTAATTGAACAGTTACTTCGGTTTGACCAAATGGTTTCAGTGGTGTTCCCAATATTTACTCATGTTTTGCTAAACCAACCTTTTATTTCCAGTTGGTTTTGAGTTTTACTTATCATGAATGAAGTAATGACCCCGTTTCTTTACCTTTTTTTTTATTTTTTATTTTTCCTAATTATTTTGTTTGAATCTTTTGTTGTGTTCTTATGTTTCAGGTTTGAACCTCGTCCTGCCCAGGCGTCACTGTGGCTATAGGATCTCAATAGAGTTTGGGCATTAATTATGGGGGTGGAATTGGAAAATGGTCAAGCTCAGTTGCACGATATGGAGGATGTTAATCTCACAGATGCCCAGTTAATTGATTTCGTTAGGGGGTTTCTTAGTTCAGTGTCTCTGGTATTGTTCTCATTACATCATTATTGGTCTTTACTTAATAAAGAGAACATATAGCATTTGAATTTTGAATTGCACTCTGTTAGTTTATTATTTGGGTTGGATATGCTTCCAAGTTCTAATCAAGTTGTTTTTTGAGGAATAACTGTAGTAACCTTACAAAAGCTCTTCCTTCGGTGTAGGGAGATAATGATGGTTATAACCAGCTTGTTGGTGTTATACACCACAGGGATCGACTATCCCCCGATGACGTTGCCTTGCTCGTGGTATGTCCTTTACATCACATCTGTTTTTGGCCAATGATACGAGATATAATTTCATACCAAATACTATCCACTTATTTACTCACTTGGTCTGCTTAACAGACATGTTTGAAGGCACTATCTGGAGCAGTTTCTTGTATAGATATCGTTCTCCACGAATCTCTTCTTGCAGCAGTAAGTTTATCACTAAACTCTGAGTCAATATCCCGCAATTTTGTTGTTGTAATGGTAGCTCGTTCTCAGATTTTTAAAATGAGCTTGTGGGATTATGGACCCAACGTGATGGATGCCCTGATTGAACTAATAATATCCCTGGTATGAGCATTTATGGTAACAGAACTCTCACACGCTTTCTCAAGGTTCACCTAATAGTTCCAAGATCTTCTGACTTTTTGTGTATTCAATGTTTCAGGCTGTTTCAAGTGGAAAATATGTGGATTCGTGCTTGGATATGCTTGTAAATAATTTCATGCCGCCCTATTCCTACAAGGATTTCCTGAAGAAACCACATGGCCTTACTAGAAAGGATGAAGTTCTTTCTCGAGTGCATACAGCTCTAAAAGACATCTCAGACTTGGTGCCTCTTGCACCCTTGAGATTAGAGCAGATAGTTGTCCATAAAATGCAGAGAGTCTTTTTCAAAGAATCTGTGAGTTGAATTTTCATGGGCTAAAAGTTTCCGAAGAGAAATCTAAGTGAAAATTGCGTTTATTTCTCACTGACTATTATTGTTATTTTCATCTTTGTAATGTTTTCCAAAAAATATTTCTAATTTTGGCTTTTTATTTTTCTACCATCCTTCTCTTTTTCATGACCATCTATTCAATGACTATTGGAAGTTTGGAGTGAAGCTGAAAGCCCATTAGTTGTTTGCATGCTTTGGCACGCTGAAGCGTTAGATGGCAAGATTTATATCATTAAAATACCCTACCAGATATAGTTCAAACTAGAACAATGCTTGATTATTATTTATAAATTAAAATGCAGTGTATATTCACTAGATGCTATATTCGTACAATCTTTGAACCTACAAACTCCTCTTAAAGCTTGTAAATAAATGTATTCATACGATCCAGATTGCTAGGTCATTTAAAATTTTAAAAAGTCAGGTAGAAATGTACCATAAAGATGGTTACATTTTCAAAAGGCCTGACCTTGAAACATTTTACAGATGCTTCTTGCTTGCTTAGAAGAGAGAGATTTCTTTGATTTCTTTTTTAAATCTTTTTTAAAAACTCATTGTCCATTTCACCTTCAAAACATTTGCACTCTTTGTTAGGAATTTGTTTTTGATTATGTCCTCCACTTATATCTGTTTAACCTCTCTGTAGTTGACCACAATATATGTTGAAAACATGTTGAGGTTGGAAAAGGGTGCAATGAGTGAATTTGTTGGGAGAAAGATCTTAACTGCGTTGGTGGATAAGCTTTTAGATTTGGATGTAAGTCAAAACAAATATTTTACAGCACTCACGTTTGTTTTTGTGATTACTTTATCAATAATATTAAGGAGTTCTAACCTTCTGGTAGGTGGAGATTGGGTGGGATGATATCCTACAAGACGATTTCAGTAAAGGAATTTTTGAGATGGAACTTGAAGATGATGATGAAACCACAGATGATATTAATGAGGATTCTAGTGAGGTATGTTATCCATTATCTAGGCTGGATTAAGAAGAATATTTCATCAACTAAGTTGTAATGGTATTTAATCTCTTTCTTAGCTTTTCTTCATTTTGTTTTGGAAAATTATGGTTGGTAATCAATGTTTTGAAAAGCTATCGAGGCTTATGCCTTGAGGCTCCCCTTAGGCATGACTCACTTTTAGCCTCAAGATTTACGCATTCGTTGAACTAGAAGAGGCTTACCCCTTGGTGAAAACACATTGAGATTAAAATTTCTACTACTCGTGTAATAATTAGAAGAATAATATTGATCTATGTCATTCTTTAAAAAAATAGAAGTTTGAGATGTGACAATTTGGACTATTATTGCTTTTAGTACTGTGACTTTAAAAACATTGAAAGCAATAAATTATAGTATGAGCCAATCCTATTAATGGTAATAGTATGGATGTTAGAAATATCCTTATAAATATTTTTGTTTAAGTGGAAATCGACGGGGTGAACTTCTTATACTTTTATATGACTGTTATGTTTAACAATACTTGGTCATCCTAGTTTTAGATTTATAAAATATTTTTAATTAAATTTGAGACTTACACCTTGCCTCTTCAAAGAGGAAAAGCCTCAAGACTAACTTTAGTCTTTTAAAGCAATTTGGCATTTGATTTATACTCTTTTATGTTTTAGATTCTAGTCTTCTAGTTTATGAAGTAATGGATCCGAAGTATATTCCTTGGCTTGAACCTAATTGTCTTTTGGGTCTACAAAGTTTATACTCTCGCCGAGTCAGGCTTTTAAAATAATATGCAACTTTTATTGAAAAATTACGTACATTTTGACTTTTCTGCCATACATCTCGATACTTCTTTTAATTCATGCCGTTATTTGCTTGGCTGAAGTTAAGTTTATTTTGCTAGCTTCCAAAAGAACTATTATTTTAAACTCAGCCAAGAAAATAATGGCATGAAAAGTTACTTACATTTTGACTTTTCTGCCATACATTTTGATACTTCTTTTAATTCATGCCGTTATTTGCTTGGCTGAATTTAAGTTTATTTTGCTAGCTTCCAAGAGAACTAAGTCGGAAGAGCTTAGGTGGAAATGTAATTGCTGAAACGTTAGATAGCTTGATTGTTCTAACATTTGAACATCTTGAATCATGTGAACGTGATGGACGATTGAATGAGGTACATTGTGTAGTTTATATGACTTTCCTTTTTTGTTCCAATTTCTTTGTTTTATTCTGCAAATGAGAATGTTTTCCATGTTTCTTTAATGTGGAGGTTAGGTTTTTGACATTTTACTCCTATCATTCCAAAGAACTGTTCTGACTGCTTACAAGTCTAAATTCGCCCAGGTAATCAACATGCCCCATAATTCTCAATGTTTTTGCTTATTTACTCTGGCTTAGTGGGCTCTCATTTTAGATCATTTTTCTTGTTTATGGAGACTGAATGACTTGCTTTAAATGCTTTTCTTGGCAGTTTGTCATATTCTATGCTTGTGCATTGGATCCCGATGTTTGTGGTGAGAGATTTGCCGTTTCGCTAGCAGATATGTTTGTTTCCTGCAATGATCCTCCGCTTACCAGGTACTAGCAATTCATTAGAAAGCTCTCTCTCTCTCTCTCTCTCTCTCTGGTAAGAGACAAATTTCGTTATCTAATTTTGCCTTTGAAAGCTATTGTTTCACTAGCGTGGCATTTCTTGCCCATTTAGTATCCATTTAAATTGAATCTCATTTGCAAGGCCTTACTGATCTAAGAAATCTACAGCTAACAAGTGTATGGTCGAGTTCCTCTCACTCTCTCTCTCTCTCTCTTATTATTATTATTTTATTTCAACGTTTTAAGGTTTGTGGTTTTTTTTACATATATATATATATATATACATTAAAAGAAAAAAACACCTGCACGTATCAAATTTGTTCTACCTTAGAGGTTTAAATGTTCCTGATTTGAGATGGGAAGAAACCTAGGAATTCTATCTGATTTATGTCAATAGCTTAGTAGCCTTGTACATGAGGTACAGTTGTATAACATCCCACTGTCTCACACACTAGTGTTCCCCAGTTTGAACCTGGGCTCAAACACATGTTTTCATTTTTTTTTTAAATATAAAAATGAAATGAAATTATATATATATAAATAAGGGCTTGTTTTTAAATATAGCAAAATGAGTCAAAATATATTCAAATATAGTAAAATATCATTATTGTCTACCAGTGATTATTGATAAACTATCATCATCTATCATTTATGATAGACACTAACATTTTGCGATATTTGAAAATATTTTCAACAGTTTTGACATTTAAAACAATTACTCATATAAATTATAATTTTAAAATTTTAAAAACATAAAAATGAAATTGAATAATATATGTTTGTGGTATTGTGCAGGATGAGTGCCGTTTCATATCTTGCGAGTTATTTGTCTCGTGGGAAGTTTTTGTCAACCACTTTGGTTACTACTATATTGAAAAGGTTAACCTGTCAACTTTAACTATGTTTCTCTGATGAAAAATATGAAACTGATAAAGTTAAAGTAGGGAGGGTAAATTTGTGGCTCAAAGTCTAATTTTGCTTCTACTTTTTTTTTTTCCAGACTGGTGGATTGGTGTTTAGAATATGGCAAAACAGTGGATGCTGACCCGAACCCAAAGGCTCATAAAGTATTTTATTCTGGTTGCCAGGTATACAATACTTCAACTCCTTTTTGCTAGACCAAGGCACGTGGGATTGTTGAAAAACGGGAAAAATAATGATTATATTTCTGGAAGTGTTGTTATTTGTACTTTTCAGTTATGATTATGATTACTTAGATTTTTTTGAGGAAACAGATTTTACTGATATTAATAAAATTCACAAGCCCTTCATGGAATTATTTGAAGACGATCCAATTGGAAGATTTTAAAGAGTGTGAATAGTCATAAAACCACTTTGGGAGGACAAACTCCACAAGGAAGTGTAAAACGGAATAGTCATAATGCTTGACAGTCTCCAACACCATGACCATGTTCCCCTTGAAACACCTTTATCTCTTTATAATCAAGTGTTTCAAAAAATGGCTGTAAATGCTTTAGACCAGATATTCGTTTCCTTTTTTTTTTCCCAACTATGCACCACATAAGGGAGAGTAAATAAATCTTGACGAAGCCATTTTTTGTTTTTTCCCCCACCACGTCACTAACCATTTAAGCAAAAGTATTTGGCTTATGGTTTTGATTTGTGTCACTTGAGGATAATGATATTTGGTGAAGGGCTTGCTTATCCTAGATTATGTGTTTTGCTAATTTCACAGGTATGGATCCTCCGTTTATACTGCATTTTTTAAAAGGAGAGACTACTTTCATAGAGCATATGGAAGAATATACAAATGGGCACTACCAAAAAAGGAAAAACCTCATCTGATATGAAAAGACAAGCCGTCACAAAAGGAGCCAAACCAAAAATAACATAGGTTGAAGCCAAAAATGATAGTAAGCATTAAGTAAAAGGCTTCGATTATTGTGGAAAATAGACGAGGATATAAATGAATTCTTAGGTTCTTACGAGCATCCCCTTATTCTATTTCTTGATTTTCTCTTGCCCTACTCGTGTACTACATTGGAGAGTGTTGGTTACTAATTTCTTTTGGAAAGGTAACAAGGAGCTTGGTGTTGTCAATCATTAAAAAAATCTTCACTTCTGAAGAATGGTACTGAGTTAGAGTGGGTTGTGGAGATAAAACTTGGTTCTGGAAGGACAAATGGTTAGTTGACCCGCCCCTTTGTTTGGAATTTTCTACGCTTTTCAGACTTGTGATTGCCAAGGATTCTTTGGTTTGTCGGCGTTAGTCTAATTCTCCTTATGTGTGGGATTTGAAGTTTAGAAGAAATTTCATTGACGCCGAATTGGGTTACTCTTTTAAACAAGTTTCAACCTTTTAGATTGAAGGTCCTTGGTTAAATGCTTAGGTGAAAATCCTTTGGTCCAATGACATCTTCGCCCTTCTTTTTAGGCTGTGGTTGGAAAGAAACTCCAGAATTGTTTTTGAATTAACAATAATTTTCTTTTGGAATTTGGTTACTCTCTCCGCATTTGAATTAACCTAATCCAAATCTATACTATTTGGGTTTTTTTTTCTTTTCTTTTTTTTTTTTTTGCAAGTTATTGTTATGTGGGGAGCCCCTCTTTTTTGATCTTTCTCTTTGATAATGAAAATTATGTTTCTTATATATTAGAAAAAACTTCTTTATCATAGTCATTTTGTTGGGCTGCTTTTGAATGTAAATCCTTTTCATTTTTATTTTTACATTGATTAAAAGCCTGTTATTATTTTCTTTAAAAAAATCCATTTGGGAGAAATGGGATAGTATTTTTGTTGATACTTTCCCACTCCAACCCCACTAACACAAAAAAAGAATTTAACCTATTAGATTATTCTTATCTAATTCGCCCCCACGTATATCCATGAAAAAGCAAGGGATTAACTGGCCCCCTAAAATGGTTTTTTATTTTTTGTTTTATTTTTTATCACTTTAAATTCTTCCTCGTTGAACCTTAAAGAAACGAAACTGCAATTTGAAATATTGATTCGATTCTATGCTAACACTTTGAATTGCTTCTTGGACGATGAATTTCATGGATGTTTTGGTCAATTAGAAAATCTGGCGTACGAGCAGTTTGTTTACAAGATTTACATTTTTTTTAATGATTTATTTTCCACAGGCTATAATGTATGTCCTTTGCTTCCGGATGAGGTCCATTTTGGAGATTCCACGTCTGAAGTCACAACTTCTGCTTATGCCTATAGGTCCAGTCTTGACGCATAGATTAAGCCCACTGAAGGTGGGTAATTGGTTGACCCCGCTTTGGTGGTTTTTGTTCTGTGCAATTTTCTTATATGAATTTTTTTTTAACGCCTTTTTGTTTAACAGGTTTGCCTACCATCTATTGTTGAGGAATTTCTTCGGCAGGCAAAAGTTGCCAATTTATTTACGCCATCAGAGACTTTTATATTTAATGGTTTGCTGGAGTCCGAATATTCAAAAACTTATGGTGGGATAGAAAGGCTCGACATGTTTTTTCCGTTTGATCCTTGCTTATTGAAAACATGTGACAGGTATATACGCTTAGTCTTGCTATTTCCTTCTTAAGATAACAAAGGGAAGGTAGATAAAACCATTATAAATATGGATACACGCAGAAGAATTATAAAATCTTCTGCCTGCTTATTGTGGATATGCTTTATATTCAAAATGATTGATTGGAATGAGTGAGAACGCTTGAGAACTTGAAGGTGTAAGAACGTTTTGTTTGATTTTTTTTTTTTTTTTTTCCGAATTATCAACTCATGCTTTGTTATTACCCTTTGTTTATGAAGATATCTACGGCCACATTTTGTATATTGGTCGATGGTCAGACCTACCTACGATGAAGAAGAAGATGGAGGTAGCAGCGATGAAGATGTTGCAGAGGTTTTTCCAGATAGAATCGAGGAAAACCTTATGGATGATGAAGCAATGGCAAGAAGCTACGACGACAGAGATTTTGATCTTGATGAATTTGATTCTGCATTAAACAAAATGTCCATCACACCAAGAAATTCTCTTCAGTACCAGCGAGATTTTGTTCAAATGCCTTCGCGAATCCGACCCTCGATGAGTCCAGAATCTTTGTGATAAAAGATCTCAGTTTGAATAGATAACTGGAATGCAAGTGAGAATGGCTGGGCTGGCATATTTCCATGAAGATGGTGATTGCAAATCTAGGCTGAGTTTTTGGGGTTTGTCTTGTTTATTTAAAATGTATAATAAATAGGTTGGGTTGGAATTGGTGGTGTTGGGCTTCAGTTTTGGTTTCTCATTCCTTTTTCTAGCTTTGCAGTGCTTTGATTATTGGCCTTGCTATTCTTAACGATCCAGGCTTGTAATAGTTGCAGTAAGTAATCAAATACAGCCAAAATTTTGTACACGTCTGAATGATATATATGTATGAGTAGAAG

mRNA sequence

ATGTTCCAACTTTCTTCATTCCCATTCGCCGTCGGCTGCTACTCTCTCTCTCTCAGTCCTCGTTCGTCATCGGTCTTTCTTCACCGCCGTTCGCGCCGTCGCCGTTCGACGGTCGCATTCCACATCGGTCTCTCTTCTCCGCCTTTTGACGTTGGAGCTGGTTTCGTTGGATCTCAATCTAACCCACTTGTTTCAGCTCAGTTGCACGATATGGAGGATGTTAATCTCACAGATGCCCAGTTAATTGATTTCGTTAGGGGGTTTCTTAGTTCAGTGTCTCTGGGAGATAATGATGGTTATAACCAGCTTGTTGGTGTTATACACCACAGGGATCGACTATCCCCCGATGACGTTGCCTTGCTCGTGACATGTTTGAAGGCACTATCTGGAGCAGTTTCTTGTATAGATATCGTTCTCCACGAATCTCTTCTTGCAGCAGTAAGTTTATCACTAAACTCTGAGTCAATATCCCGCAATTTTGTTGTTGTAATGGTAGCTCGTTCTCAGATTTTTAAAATGAGCTTGTGGGATTATGGACCCAACGTGATGGATGCCCTGATTGAACTAATAATATCCCTGGCTGTTTCAAGTGGAAAATATGTGGATTCGTGCTTGGATATGCTTGTAAATAATTTCATGCCGCCCTATTCCTACAAGGATTTCCTGAAGAAACCACATGGCCTTACTAGAAAGGATGAAGTTCTTTCTCGAGTGCATACAGCTCTAAAAGACATCTCAGACTTGGTGCCTCTTGCACCCTTGAGATTAGAGCAGATAGTTGTCCATAAAATGCAGAGAGTCTTTTTCAAAGAATCTTTGACCACAATATATGTTGAAAACATGTTGAGGTTGGAAAAGGGTGCAATGAGTGAATTTGTTGGGAGAAAGATCTTAACTGCGTTGGTGGATAAGCTTTTAGATTTGGATGTGGAGATTGGGTGGGATGATATCCTACAAGACGATTTCAGTAAAGGAATTTTTGAGATGGAACTTGAAGATGATGATGAAACCACAGATGATATTAATGAGGATTCTAGTGAGCTTCCAAGAGAACTAAGTCGGAAGAGCTTAGGTGGAAATGTAATTGCTGAAACGTTAGATAGCTTGATTGTTCTAACATTTGAACATCTTGAATCATGTGAACGTGATGGACGATTGAATGAGGTTTTTGACATTTTACTCCTATCATTCCAAAGAACTGTTCTGACTGCTTACAAGTCTAAATTCGCCCAGTTTGTCATATTCTATGCTTGTGCATTGGATCCCGATGTTTGTGGTGAGAGATTTGCCGTTTCGCTAGCAGATATGTTTGTTTCCTGCAATGATCCTCCGCTTACCAGACTGGTGGATTGGTGTTTAGAATATGGCAAAACAGTGGATGCTGACCCGAACCCAAAGGCTCATAAAGTATTTTATTCTGGTTGCCAGGCTATAATGTATGTCCTTTGCTTCCGGATGAGGTCCATTTTGGAGATTCCACGTCTGAAGTCACAACTTCTGCTTATGCCTATAGGTCCAGTCTTGACGCATAGATTAAGCCCACTGAAGGTTTGCCTACCATCTATTGTTGAGGAATTTCTTCGGCAGGCAAAAGTTGCCAATTTATTTACGCCATCAGAGACTTTTATATTTAATGGTTTGCTGGAGTCCGAATATTCAAAAACTTATGGTGGGATAGAAAGGCTCGACATGTTTTTTCCGTTTGATCCTTGCTTATTGAAAACATGTGACAGATATCTACGGCCACATTTTGTATATTGGTCGATGGTCAGACCTACCTACGATGAAGAAGAAGATGGAGGTAGCAGCGATGAAGATGTTGCAGAGGTTTTTCCAGATAGAATCGAGGAAAACCTTATGGATGATGAAGCAATGGCAAGAAGCTACGACGACAGAGATTTTGATCTTGATGAATTTGATTCTGCATTAAACAAAATGTCCATCACACCAAGAAATTCTCTTCAGTACCAGCGAGATTTTGTTCAAATGCCTTCGCGAATCCGACCCTCGATGAGTCCAGAATCTTTGTGATAAAAGATCTCAGTTTGAATAGATAACTGGAATGCAAGTGAGAATGGCTGGGCTGGCATATTTCCATGAAGATGGTGATTGCAAATCTAGGCTGAGTTTTTGGGGTTTGTCTTGTTTATTTAAAATGTATAATAAATAGGTTGGGTTGGAATTGGTGGTGTTGGGCTTCAGTTTTGGTTTCTCATTCCTTTTTCTAGCTTTGCAGTGCTTTGATTATTGGCCTTGCTATTCTTAACGATCCAGGCTTGTAATAGTTGCAGTAAGTAATCAAATACAGCCAAAATTTTGTACACGTCTGAATGATATATATGTATGAGTAGAAG

Coding sequence (CDS)

ATGTTCCAACTTTCTTCATTCCCATTCGCCGTCGGCTGCTACTCTCTCTCTCTCAGTCCTCGTTCGTCATCGGTCTTTCTTCACCGCCGTTCGCGCCGTCGCCGTTCGACGGTCGCATTCCACATCGGTCTCTCTTCTCCGCCTTTTGACGTTGGAGCTGGTTTCGTTGGATCTCAATCTAACCCACTTGTTTCAGCTCAGTTGCACGATATGGAGGATGTTAATCTCACAGATGCCCAGTTAATTGATTTCGTTAGGGGGTTTCTTAGTTCAGTGTCTCTGGGAGATAATGATGGTTATAACCAGCTTGTTGGTGTTATACACCACAGGGATCGACTATCCCCCGATGACGTTGCCTTGCTCGTGACATGTTTGAAGGCACTATCTGGAGCAGTTTCTTGTATAGATATCGTTCTCCACGAATCTCTTCTTGCAGCAGTAAGTTTATCACTAAACTCTGAGTCAATATCCCGCAATTTTGTTGTTGTAATGGTAGCTCGTTCTCAGATTTTTAAAATGAGCTTGTGGGATTATGGACCCAACGTGATGGATGCCCTGATTGAACTAATAATATCCCTGGCTGTTTCAAGTGGAAAATATGTGGATTCGTGCTTGGATATGCTTGTAAATAATTTCATGCCGCCCTATTCCTACAAGGATTTCCTGAAGAAACCACATGGCCTTACTAGAAAGGATGAAGTTCTTTCTCGAGTGCATACAGCTCTAAAAGACATCTCAGACTTGGTGCCTCTTGCACCCTTGAGATTAGAGCAGATAGTTGTCCATAAAATGCAGAGAGTCTTTTTCAAAGAATCTTTGACCACAATATATGTTGAAAACATGTTGAGGTTGGAAAAGGGTGCAATGAGTGAATTTGTTGGGAGAAAGATCTTAACTGCGTTGGTGGATAAGCTTTTAGATTTGGATGTGGAGATTGGGTGGGATGATATCCTACAAGACGATTTCAGTAAAGGAATTTTTGAGATGGAACTTGAAGATGATGATGAAACCACAGATGATATTAATGAGGATTCTAGTGAGCTTCCAAGAGAACTAAGTCGGAAGAGCTTAGGTGGAAATGTAATTGCTGAAACGTTAGATAGCTTGATTGTTCTAACATTTGAACATCTTGAATCATGTGAACGTGATGGACGATTGAATGAGGTTTTTGACATTTTACTCCTATCATTCCAAAGAACTGTTCTGACTGCTTACAAGTCTAAATTCGCCCAGTTTGTCATATTCTATGCTTGTGCATTGGATCCCGATGTTTGTGGTGAGAGATTTGCCGTTTCGCTAGCAGATATGTTTGTTTCCTGCAATGATCCTCCGCTTACCAGACTGGTGGATTGGTGTTTAGAATATGGCAAAACAGTGGATGCTGACCCGAACCCAAAGGCTCATAAAGTATTTTATTCTGGTTGCCAGGCTATAATGTATGTCCTTTGCTTCCGGATGAGGTCCATTTTGGAGATTCCACGTCTGAAGTCACAACTTCTGCTTATGCCTATAGGTCCAGTCTTGACGCATAGATTAAGCCCACTGAAGGTTTGCCTACCATCTATTGTTGAGGAATTTCTTCGGCAGGCAAAAGTTGCCAATTTATTTACGCCATCAGAGACTTTTATATTTAATGGTTTGCTGGAGTCCGAATATTCAAAAACTTATGGTGGGATAGAAAGGCTCGACATGTTTTTTCCGTTTGATCCTTGCTTATTGAAAACATGTGACAGATATCTACGGCCACATTTTGTATATTGGTCGATGGTCAGACCTACCTACGATGAAGAAGAAGATGGAGGTAGCAGCGATGAAGATGTTGCAGAGGTTTTTCCAGATAGAATCGAGGAAAACCTTATGGATGATGAAGCAATGGCAAGAAGCTACGACGACAGAGATTTTGATCTTGATGAATTTGATTCTGCATTAAACAAAATGTCCATCACACCAAGAAATTCTCTTCAGTACCAGCGAGATTTTGTTCAAATGCCTTCGCGAATCCGACCCTCGATGAGTCCAGAATCTTTGTGA

Protein sequence

MFQLSSFPFAVGCYSLSLSPRSSSVFLHRRSRRRRSTVAFHIGLSSPPFDVGAGFVGSQSNPLVSAQLHDMEDVNLTDAQLIDFVRGFLSSVSLGDNDGYNQLVGVIHHRDRLSPDDVALLVTCLKALSGAVSCIDIVLHESLLAAVSLSLNSESISRNFVVVMVARSQIFKMSLWDYGPNVMDALIELIISLAVSSGKYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLSRVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRKILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRKSLGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYACALDPDVCGERFAVSLADMFVSCNDPPLTRLVDWCLEYGKTVDADPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVLTHRLSPLKVCLPSIVEEFLRQAKVANLFTPSETFIFNGLLESEYSKTYGGIERLDMFFPFDPCLLKTCDRYLRPHFVYWSMVRPTYDEEEDGGSSDEDVAEVFPDRIEENLMDDEAMARSYDDRDFDLDEFDSALNKMSITPRNSLQYQRDFVQMPSRIRPSMSPESL

Homology

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BLAST of CcUC05G082600 vs. NCBI nr
Match: XP_038896673.1 (RNA polymerase I-specific transcription initiation factor RRN3-like [Benincasa hispida])

HSP 1 Score: 1097.8 bits (2838), Expect = 0.0e+00
Identity = 566/654 (86.54%), Postives = 585/654 (89.45%), Query Frame = 0


Query: 51  VGAGFVGSQSNPLVSAQLHDMEDVNLTDAQLIDFVRGFLSSVSLGDNDGYNQLVGVIHHR 110
           +GA F   Q      AQLHDMEDVNLTDAQL+DF+RGFLSSVSLGDNDGYNQL+GVIHH+
Sbjct: 1   MGAEFENGQ------AQLHDMEDVNLTDAQLVDFIRGFLSSVSLGDNDGYNQLIGVIHHK 60

Query: 111 DRLSPDDVALLVTCLKALSGAVSCIDIVLHESLLAAVSLSLNSESISRNFVVVMVARSQI 170
           DRLSPD++ALLVTCLKALSGAVSCIDI+LHESLL+A                       I
Sbjct: 61  DRLSPDEIALLVTCLKALSGAVSCIDIILHESLLSA-----------------------I 120

Query: 171 FKMSLWDYGPNVMDALIELIISLAVSSGKYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTR 230
           FKMSLWDYGPNVMDALIELIISLAVSSG YVDSCLDMLVNNFMPPYSYKDFLKKPHGLTR
Sbjct: 121 FKMSLWDYGPNVMDALIELIISLAVSSGNYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTR 180

Query: 231 KDEVLSRVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMS 290
           KDEVLSRVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMS
Sbjct: 181 KDEVLSRVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMS 240

Query: 291 EFVGRKILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPR 350
           EFVGRKILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDET DD NEDSSELPR
Sbjct: 241 EFVGRKILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETADDSNEDSSELPR 300

Query: 351 ELSRKSLGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFA 410
           ELSRKSLGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFA
Sbjct: 301 ELSRKSLGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFA 360

Query: 411 QFVIFYACALDPDVCGERFAVSLADMFVSCNDPPLT------------------------ 470
           QFVIFYACAL P+VCGERFAVSLADMFVSCNDPPLT                        
Sbjct: 361 QFVIFYACALYPEVCGERFAVSLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVT 420

Query: 471 ----RLVDWCLEYGKTVDADPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLM 530
               RLVDWCLEYGKT+D +PNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLM
Sbjct: 421 SILKRLVDWCLEYGKTLDVEPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLM 480

Query: 531 PIGPVLTHRLSPLKVCLPSIVEEFLRQAKVANLFTPSETFIFNGLLESEYSKTYGGIERL 590
           PIGPVLTHRLSPLKVCLPSIVEEFLRQAKVANLFTPSET++FNGLLES+YS+T+GGIERL
Sbjct: 481 PIGPVLTHRLSPLKVCLPSIVEEFLRQAKVANLFTPSETYVFNGLLESDYSRTFGGIERL 540

Query: 591 DMFFPFDPCLLKTCDRYLRPHFVYWSMVRPTYDEEE-DGGSSDEDVAEVFPDRIEENLMD 650
           DMFFPFDPCLLK CDRYLRPHFVYWSMVRPTYDEEE DGGSSDEDVAEVFPDRIEENLMD
Sbjct: 541 DMFFPFDPCLLKKCDRYLRPHFVYWSMVRPTYDEEEGDGGSSDEDVAEVFPDRIEENLMD 600

Query: 651 DEAMARSYDDRDFDLDEFDSALNKMSITPRNSLQYQRDFVQMPSRIRPSMSPES 676
           DEAMARSYDD+DFDLDEFDSALN MSITPRNSLQY+RDFVQMPSRIRPSMSPES
Sbjct: 601 DEAMARSYDDQDFDLDEFDSALNNMSITPRNSLQYRRDFVQMPSRIRPSMSPES 625

[Close]

BLAST of CcUC05G082600 vs. NCBI nr
Match: KAA0048966.1 (RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis melo var. makuwa])

HSP 1 Score: 1090.5 bits (2819), Expect = 0.0e+00
Identity = 562/643 (87.40%), Postives = 589/643 (91.60%), Query Frame = 0


Query: 66  AQLHDMEDVNLTDAQLIDFVRGFLSSVSLGDNDGYNQLVGVIHHRDRLSPDDVALLVTCL 125
           AQLHDMEDVNLTDAQL+DF+RGFLSSVSLGD DGYNQLVGVIHHRDRLSPD+VALLVTCL
Sbjct: 10  AQLHDMEDVNLTDAQLVDFIRGFLSSVSLGDTDGYNQLVGVIHHRDRLSPDEVALLVTCL 69

Query: 126 KALSGAVSCIDIVLHESLLAAVSLSLNSESISRNFVVVMVARSQIFKMSLWDYGPNVMDA 185
           KALSGAVSCIDI+ HESLLAAVSL LNSES+S NFVVVM   SQIFKMSLWDYGPNVMD+
Sbjct: 70  KALSGAVSCIDIIQHESLLAAVSLCLNSESLSCNFVVVMEVLSQIFKMSLWDYGPNVMDS 129

Query: 186 LIELIISLAVSSGKYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLSRVHTALKDI 245
           LIELIISLAVS+GKYV+SCLDMLVNNFMPP SY DFLKKPHGLT+KDEVLSRVHTALKDI
Sbjct: 130 LIELIISLAVSNGKYVNSCLDMLVNNFMPPNSYMDFLKKPHGLTKKDEVLSRVHTALKDI 189

Query: 246 SDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRKILTALVDKL 305
           SDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGA+SEFVGRKILTALVDKL
Sbjct: 190 SDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGALSEFVGRKILTALVDKL 249

Query: 306 LDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRKSLGGNVIAET 365
           LDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSR+SLGGNVIAET
Sbjct: 250 LDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRRSLGGNVIAET 309

Query: 366 LDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYACALDPDVC 425
           LDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYAC+LDP+VC
Sbjct: 310 LDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYACSLDPEVC 369

Query: 426 GERFAVSLADMFVSCNDPP----------------------------LTRLVDWCLEYGK 485
           G RFAVSLADMFVSCNDPP                            L RLVDWCLEYG+
Sbjct: 370 GARFAVSLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGE 429

Query: 486 TVDADPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVLTHRLSPLKV 545
           T++ DPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGP+LTHRLSPLKV
Sbjct: 430 TLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKV 489

Query: 546 CLPSIVEEFLRQAKVANLFTPSETFIFNGLLESEYSKTYGGIERLDMFFPFDPCLLKTCD 605
           CLPSIVEEFL+QAKVANLFTPSETFIFNGLLESEYS+++GG+ERLDMFFPFDPCLLK CD
Sbjct: 490 CLPSIVEEFLQQAKVANLFTPSETFIFNGLLESEYSRSFGGLERLDMFFPFDPCLLKKCD 549

Query: 606 RYLRPHFVYWSMVRPTY----DEEEDGGSSDEDVAEVFPDRIEENLMDDEAMARSYDDRD 665
           RYLRPHFVYWSMVRPTY    ++EEDGGSSDED AEVFPD IEENLMDD AMARSYDD+D
Sbjct: 550 RYLRPHFVYWSMVRPTYAEEEEQEEDGGSSDED-AEVFPDIIEENLMDDVAMARSYDDQD 609

Query: 666 FDLDEFDSALNKMSITPRNSLQYQRDFVQMPSRIRPSMSPESL 677
           FDL   DS LN MSITPRNSLQY+ DFV+MPSRIRPSMSPESL
Sbjct: 610 FDL---DSGLNNMSITPRNSLQYRHDFVKMPSRIRPSMSPESL 648

[Close]

BLAST of CcUC05G082600 vs. NCBI nr
Match: XP_038901148.1 (RNA polymerase I-specific transcription initiation factor RRN3-like [Benincasa hispida])

HSP 1 Score: 1080.1 bits (2792), Expect = 0.0e+00
Identity = 555/639 (86.85%), Postives = 577/639 (90.30%), Query Frame = 0


Query: 66  AQLHDMEDVNLTDAQLIDFVRGFLSSVSLGDNDGYNQLVGVIHHRDRLSPDDVALLVTCL 125
           AQLHDME VNLTDAQL+DFVRGFLSSVSLGDNDGYNQLVGVIHH+DRL+P++VALLVTCL
Sbjct: 10  AQLHDMEGVNLTDAQLVDFVRGFLSSVSLGDNDGYNQLVGVIHHKDRLTPEEVALLVTCL 69

Query: 126 KALSGAVSCIDIVLHESLLAAVSLSLNSESISRNFVVVMVARSQIFKMSLWDYGPNVMDA 185
           KALSGAVSCIDIVLHESLLAA                       IFK SLWDYG NVMDA
Sbjct: 70  KALSGAVSCIDIVLHESLLAA-----------------------IFKRSLWDYGRNVMDA 129

Query: 186 LIELIISLAVSSGKYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLSRVHTALKDI 245
           LIELIISLAVSSGKYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLSRVHTALKDI
Sbjct: 130 LIELIISLAVSSGKYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLSRVHTALKDI 189

Query: 246 SDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRKILTALVDKL 305
            DLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVE+MLRLEKGAMSEFVGRKILTALVDKL
Sbjct: 190 LDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVESMLRLEKGAMSEFVGRKILTALVDKL 249

Query: 306 LDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRKSLGGNVIAET 365
           LDLDVEIGWDDILQDDFSKGIFEMEL DDDETT+DINE SSELPRELSRKSLGGN+IAET
Sbjct: 250 LDLDVEIGWDDILQDDFSKGIFEMELADDDETTEDINEASSELPRELSRKSLGGNIIAET 309

Query: 366 LDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYACALDPDVC 425
           LDSLIVLTFEHLESCERDGRLNEVFD+LLLSFQRTVLTAYKSKFAQFVIFYACALDP+VC
Sbjct: 310 LDSLIVLTFEHLESCERDGRLNEVFDVLLLSFQRTVLTAYKSKFAQFVIFYACALDPEVC 369

Query: 426 GERFAVSLADMFVSCNDPPLT----------------------------RLVDWCLEYGK 485
           G RFAV LADMFVSCNDPPLT                            RLVDWCLEYGK
Sbjct: 370 GARFAVWLADMFVSCNDPPLTRMKAVSYLASYLSRGKFLSTSLVTIILKRLVDWCLEYGK 429

Query: 486 TVDADPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVLTHRLSPLKV 545
           T+D DPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLL+PIGPVLTHRLSPLKV
Sbjct: 430 TLDVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLIPIGPVLTHRLSPLKV 489

Query: 546 CLPSIVEEFLRQAKVANLFTPSETFIFNGLLESEYSKTYGGIERLDMFFPFDPCLLKTCD 605
           CLPSIVEEFLRQA+VANLF+PSETFIFNGLLESEYS+T+GGIERLDMFFPFDPCLLKTCD
Sbjct: 490 CLPSIVEEFLRQAEVANLFSPSETFIFNGLLESEYSQTFGGIERLDMFFPFDPCLLKTCD 549

Query: 606 RYLRPHFVYWSMVRPTYDEEEDGGSSDEDVAEVFPDRIEENLMDDEAMARSYDDRDFDLD 665
           RYLRPHFVYWSMVRPTYDEEE GGSSDEDVAEVFPDRIEENLMDDEA+ARSYDDRDFDLD
Sbjct: 550 RYLRPHFVYWSMVRPTYDEEEYGGSSDEDVAEVFPDRIEENLMDDEAVARSYDDRDFDLD 609

Query: 666 EFDSALNKMSITPRNSLQYQRDFVQMPSRIRPSMSPESL 677
           EFDSALN+MSITPRNSLQY+RDFVQMP +IRP++SPESL
Sbjct: 610 EFDSALNEMSITPRNSLQYRRDFVQMPLQIRPTISPESL 625

[Close]

BLAST of CcUC05G082600 vs. NCBI nr
Match: XP_008438040.1 (PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis melo] >XP_008438041.1 PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis melo] >XP_008438044.1 PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis melo] >TYK17601.1 RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis melo var. makuwa])

HSP 1 Score: 1051.2 bits (2717), Expect = 3.8e-303
Identity = 545/643 (84.76%), Postives = 571/643 (88.80%), Query Frame = 0


Query: 66  AQLHDMEDVNLTDAQLIDFVRGFLSSVSLGDNDGYNQLVGVIHHRDRLSPDDVALLVTCL 125
           AQLHDMEDVNLTDAQL+DF+RGFLSSVSLGD DGYNQLVGVIHHRDRLSPD+VALLVTCL
Sbjct: 10  AQLHDMEDVNLTDAQLVDFIRGFLSSVSLGDTDGYNQLVGVIHHRDRLSPDEVALLVTCL 69

Query: 126 KALSGAVSCIDIVLHESLLAAVSLSLNSESISRNFVVVMVARSQIFKMSLWDYGPNVMDA 185
           KALSGAVSCIDI+ HESLLAA                       IFKMSLWDYGPNVMD+
Sbjct: 70  KALSGAVSCIDIIQHESLLAA-----------------------IFKMSLWDYGPNVMDS 129

Query: 186 LIELIISLAVSSGKYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLSRVHTALKDI 245
           LIELIISLAVS+GKYV+SCLDMLVNNFMPP SY DFLKKPHGLT+KDEVLSRVHTALKDI
Sbjct: 130 LIELIISLAVSNGKYVNSCLDMLVNNFMPPNSYMDFLKKPHGLTKKDEVLSRVHTALKDI 189

Query: 246 SDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRKILTALVDKL 305
           SDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGA+SEFVGRKILTALVDKL
Sbjct: 190 SDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGALSEFVGRKILTALVDKL 249

Query: 306 LDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRKSLGGNVIAET 365
           LDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSR+SLGGNVIAET
Sbjct: 250 LDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRRSLGGNVIAET 309

Query: 366 LDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYACALDPDVC 425
           LDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYAC+LDP+VC
Sbjct: 310 LDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYACSLDPEVC 369

Query: 426 GERFAVSLADMFVSCNDPP----------------------------LTRLVDWCLEYGK 485
           G RFAVSLADMFVSCNDPP                            L RLVDWCLEYG+
Sbjct: 370 GARFAVSLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGE 429

Query: 486 TVDADPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVLTHRLSPLKV 545
           T++ DPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGP+LTHRLSPLKV
Sbjct: 430 TLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKV 489

Query: 546 CLPSIVEEFLRQAKVANLFTPSETFIFNGLLESEYSKTYGGIERLDMFFPFDPCLLKTCD 605
           CLPSIVEEFL+QAKVANLFTPSETFIFNGLLESEYS+++GG+ERLDMFFPFDPCLLK CD
Sbjct: 490 CLPSIVEEFLQQAKVANLFTPSETFIFNGLLESEYSRSFGGLERLDMFFPFDPCLLKKCD 549

Query: 606 RYLRPHFVYWSMVRPTY----DEEEDGGSSDEDVAEVFPDRIEENLMDDEAMARSYDDRD 665
           RYLRPHFVYWSMVRPTY    ++EEDGGSSDED AEVFPD IEENLMDD AMARSYDD+D
Sbjct: 550 RYLRPHFVYWSMVRPTYAEEEEQEEDGGSSDED-AEVFPDIIEENLMDDVAMARSYDDQD 609

Query: 666 FDLDEFDSALNKMSITPRNSLQYQRDFVQMPSRIRPSMSPESL 677
           FDL   DS LN MSITPRNSLQY+ DFV+MPSRIRPSMSPESL
Sbjct: 610 FDL---DSGLNNMSITPRNSLQYRHDFVKMPSRIRPSMSPESL 625

[Close]

BLAST of CcUC05G082600 vs. NCBI nr
Match: XP_004133864.1 (RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis sativus] >XP_011650750.1 RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis sativus])

HSP 1 Score: 1042.3 bits (2694), Expect = 1.8e-300
Identity = 540/642 (84.11%), Postives = 566/642 (88.16%), Query Frame = 0


Query: 66  AQLHDMEDVNLTDAQLIDFVRGFLSSVSLGDNDGYNQLVGVIHHRDRLSPDDVALLVTCL 125
           AQLH MEDVNLTDAQL+DF+RGFLSSVSLGD DGYNQLVGVIHHRDRLSPD+VALLVTCL
Sbjct: 10  AQLHAMEDVNLTDAQLVDFIRGFLSSVSLGDIDGYNQLVGVIHHRDRLSPDEVALLVTCL 69

Query: 126 KALSGAVSCIDIVLHESLLAAVSLSLNSESISRNFVVVMVARSQIFKMSLWDYGPNVMDA 185
           KALSGAVSCIDI+LHESLLAA                       IFKMSLWDYG NVMDA
Sbjct: 70  KALSGAVSCIDIILHESLLAA-----------------------IFKMSLWDYGSNVMDA 129

Query: 186 LIELIISLAVSSGKYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLSRVHTALKDI 245
           LIELIISLAVS+GKYVDSCLDMLVNNFMPP SY D LKKPHGLTRK+EVLSRVHTALKDI
Sbjct: 130 LIELIISLAVSNGKYVDSCLDMLVNNFMPPNSYMDLLKKPHGLTRKEEVLSRVHTALKDI 189

Query: 246 SDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRKILTALVDKL 305
           SDLVPLAPLRLEQ VVHKMQRVFF ESLTTIYVENMLRLEKGA+SEFVGRKILTALVDKL
Sbjct: 190 SDLVPLAPLRLEQKVVHKMQRVFFNESLTTIYVENMLRLEKGALSEFVGRKILTALVDKL 249

Query: 306 LDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRKSLGGNVIAET 365
           LDLDVEIGWDDILQDDFSKGIFEMELEDDD+TTDDINEDSSELPRELSR+SLGGNVIAET
Sbjct: 250 LDLDVEIGWDDILQDDFSKGIFEMELEDDDDTTDDINEDSSELPRELSRRSLGGNVIAET 309

Query: 366 LDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYACALDPDVC 425
           LDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQF++FYAC+LDP+VC
Sbjct: 310 LDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFYACSLDPEVC 369

Query: 426 GERFAVSLADMFVSCNDPP----------------------------LTRLVDWCLEYGK 485
           G RFA+SLADMFVSCNDPP                            L RLVDWCLEYGK
Sbjct: 370 GARFAISLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGK 429

Query: 486 TVDADPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVLTHRLSPLKV 545
           T++ DPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGP+LTHRLSPLKV
Sbjct: 430 TLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKV 489

Query: 546 CLPSIVEEFLRQAKVANLFTPSETFIFNGLLESEYSKTYGGIERLDMFFPFDPCLLKTCD 605
           CLPSIVEEFLRQAKVANLFTPSE FIFNGLLES+YS+++GG+ERLDMFFPFDPCLLK CD
Sbjct: 490 CLPSIVEEFLRQAKVANLFTPSENFIFNGLLESDYSRSFGGLERLDMFFPFDPCLLKKCD 549

Query: 606 RYLRPHFVYWSMVRPTYDEEE-----DGGSSDEDVAEVFPDRIEENLMDDEAMARSYDDR 665
           RYLRPHFVYWSMVRPTYDEEE     DGGSSDED AE+FPDRI+ENLMDDEAMA SYDD+
Sbjct: 550 RYLRPHFVYWSMVRPTYDEEEEEEEDDGGSSDED-AEIFPDRIDENLMDDEAMAISYDDQ 609

Query: 666 DFDLDEFDSALNKMSITPRNSLQYQRDFVQMPSRIRPSMSPE 675
           DFDL   DS LNKMSITPRNSLQY+ DFVQMPSRIRPSMSPE
Sbjct: 610 DFDL---DSGLNKMSITPRNSLQYRCDFVQMPSRIRPSMSPE 624

[Close]

BLAST of CcUC05G082600 vs. ExPASy Swiss-Prot
Match: B2RS91 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Mus musculus OX=10090 GN=Rrn3 PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.3e-24
Identity = 138/557 (24.78%), Postives = 228/557 (40.93%), Query Frame = 0


Query: 170 IFKMSLWDYGPNVMDALIELIISLAVSSGKYVDSCLDMLVNNFMPPYSYKDFLKKPHGLT 229
           I ++   +    V++  +  + +L  +   ++  CL M+ ++F+PP      + K  G+ 
Sbjct: 111 ILRLPWLNRSQRVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPP----RVIVKEGGID 170

Query: 230 RKDE---------VLSRVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVEN 289
             D          +    H AL+ I+  VP  P  L  I+V K   V   E     YV N
Sbjct: 171 VSDSDDEDDNLPAIFDTCHRALQIITRYVPSTPWFLMPILVEKFPFVRKSERTLECYVHN 230

Query: 290 MLRLEKGAMSEFVGRKILTALVDKLLDLDVEIGWDDILQ-----------DDFSKGIFEM 349
           +LR+        + R+IL  +++KLL LDV +   DI              D ++G+F M
Sbjct: 231 LLRI--SLYFPTLRREILELVIEKLLKLDVSVSRQDIEDAEEKAAQTCGGTDTTEGLFNM 290

Query: 350 ELEDDDETTDDINEDSSELPRELSRKSLGGNVIAETLDSLIVLTFEHLES-CERDGRLN- 409
              D+DE TD   +   E P +++  +      AE LD L+ L   ++E  C   G+++ 
Sbjct: 291 ---DEDEDTDPEKKADQEQPNQMAHPT------AERLDVLLCLLLSYIEDVCRVHGKIDN 350

Query: 410 ----EVFDILLLSFQRTVLTAYKSKFAQFVIFYACALDPDVCGERFAVSLADMFVSCNDP 469
               +++  L+  F + +L  + S   QF +F+ C+       E F   L       N+P
Sbjct: 351 NKTKDLYRDLISIFDKLLLPTHASCHVQFFMFFLCSFKLGF-AEAFLEHLWKKLQDPNNP 410

Query: 470 PLTR----------------------------LVDWCLEYGKTVDADPNPKA------HK 529
            + R                            LV+W   Y    + D   KA      H 
Sbjct: 411 AIIRQAAANYIGSFLARAKFIPLITVKTCLDLLVNWLHMY--LTNQDSGTKAFCDVALHG 470

Query: 530 VFYSGCQAIMYVLCFRMRSIL--EIPRLKSQLLLMPIGPVLTHRLSPLKVCLPSIVEEFL 589
            FYS CQA+ Y + FR + +L   + +    L  +    ++  +L+PLK+CLP +V  F 
Sbjct: 471 PFYSACQAVFYTVVFRHKQLLSGNLKQGLQYLQSLNFERIVLSQLNPLKICLPQVVNFF- 530

Query: 590 RQAKVANLFTPSETFIFNGLLESEYSK--------TYGG------IERLDMFFPFDPCLL 649
             A + N +      +F   +    S+        T GG         LD FFPFDPC+L
Sbjct: 531 --AAITNKY----QLVFCYTIMERNSRQMLPVIRSTAGGDSVQTCTNPLDTFFPFDPCVL 590

Query: 650 KTCDRYLRPHFVYWSMVRPTYDEEEDGGSSDEDVAEVFPDRIEENLMDDEAMARSYDDRD 651
           K   +++ P +  W          EDG  S E++ E F    ++ +++DE       D D
Sbjct: 591 KRSKKFIDPIYQIW----------EDG--SAEELQE-FKKSTKKEVVEDE-------DDD 622

[Close]

BLAST of CcUC05G082600 vs. ExPASy Swiss-Prot
Match: Q5R4N9 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Pongo abelii OX=9601 GN=RRN3 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.8e-21
Identity = 136/542 (25.09%), Postives = 221/542 (40.77%), Query Frame = 0


Query: 176 WDYGPNVMDALIELIISLAVSSGKYVDSCLDMLVNNFMPP-YSYKDFLKKPHGLTRKDEV 235
           W     V++  +  + +L  +   ++  CL M+ ++F+PP    K+          +D+ 
Sbjct: 118 WLKSQTVVEEYLAFLANLVSAQTVFLRPCLGMIASHFVPPRVIIKEGDVDVSDSDDEDDN 177

Query: 236 L----SRVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMS 295
           L       H AL+ I+  VP  P  L  I+V K   V   E     YV N+LR+      
Sbjct: 178 LPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLECYVHNLLRI--SVYF 237

Query: 296 EFVGRKILTALVDKLLDLDVEIGWDDILQ-----------DDFSKGIFEMELEDDDETTD 355
             +  +IL  +++KLL LDV     DI              D ++G+F M   D+DE T+
Sbjct: 238 PTLRHEILELIIEKLLKLDVNASRQDIEDAEETATQTCGGTDSTEGLFNM---DEDEETE 297

Query: 356 DINEDSSELPRELSRKSLGGNVIAETLDSLIVLTFEHLES-CERDGRLN-----EVFDIL 415
               ++   P  L +     + +AE LD L+ L   +++  C  DG+++     +++  L
Sbjct: 298 ---HETKAGPERLDQMV---HPVAECLDILMSLVLSYMKDVCYVDGQVDNGKTKDLYRDL 357

Query: 416 LLSFQRTVLTAYKSKFAQFVIFYACALDPDVCGERFAVSLADMFVSCNDPPLTR------ 475
           +  F + +L+ + S   QF +FY C+       E F   L       ++P + R      
Sbjct: 358 INIFDKLLLSTHASCHVQFFMFYLCSFKLGF-AEAFLEHLWKKLQDPSNPAIIRQAAGNY 417

Query: 476 ----------------------LVDWCLEYGKTVDADP----NPKAHKVFYSGCQAIMYV 535
                                 LV+W   Y    D+      +   H  FYS CQA+ Y 
Sbjct: 418 IGSFLARAKFIPLITVRSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYT 477

Query: 536 LCFRMRSILEIPRLKSQLLLMP---IGPVLTHRLSPLKVCLPSIVEEFLRQAKVANLFTP 595
             FR + +L    LK  L  +       ++  +L+PLK+CLPS+V  F   A + N +  
Sbjct: 478 FVFRHKQLLS-GNLKEGLRYLQSLNFEWIVMSQLNPLKICLPSVVNFF---AAITNKYQL 537

Query: 596 SETFIF----NGLLESEYSKTYGG------IERLDMFFPFDPCLLKTCDRYLRPHFVYWS 651
              +      N  +      T GG         LD FFPFDPC+LK   +++ P +  W 
Sbjct: 538 VFCYTIIERNNRQMLPVIRSTAGGDSVQTCTNPLDTFFPFDPCVLKRSKKFIDPIYQVW- 597

[Close]

BLAST of CcUC05G082600 vs. ExPASy Swiss-Prot
Match: Q9NYV6 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Homo sapiens OX=9606 GN=RRN3 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 7.6e-20
Identity = 135/549 (24.59%), Postives = 227/549 (41.35%), Query Frame = 0


Query: 168 SQIFKMSLWDYGPNVMDALIELIISLAVSSGKYVDSCLDMLVNNFMPP-YSYKDFLKKPH 227
           S I ++   +    V++  +  + +L  +   ++  CL M+ ++F+PP    K+      
Sbjct: 111 SIILRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDVS 170

Query: 228 GLTRKDEVL----SRVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENML 287
               +D+ L       H AL+ I+  VP  P  L  I+V K   V   E     YV N+L
Sbjct: 171 DSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLECYVHNLL 230

Query: 288 RLEKGAMSEFVGRKILTALVDKLLDLDVEI---GWDDILQ--------DDFSKGIFEMEL 347
           R+        +  +IL  +++KLL LDV     G +D  +         D ++G+F M  
Sbjct: 231 RI--SVYFPTLRHEILELIIEKLLKLDVNASRQGIEDAEETATQTCGGTDSTEGLFNM-- 290

Query: 348 EDDDETTDDINEDSSELPRELSRKSLGGNVIAETLDSLIVLTFEHLES-CERDGRLN--- 407
            D+DE T+    ++   P  L +     + +AE LD L+ L   +++  C  DG+++   
Sbjct: 291 -DEDEETE---HETKAGPERLDQMV---HPVAERLDILMSLVLSYMKDVCYVDGKVDNGK 350

Query: 408 --EVFDILLLSFQRTVLTAYKSKFAQFVIFYACALDPDVCGERFAVSLADMFVSCNDPPL 467
             +++  L+  F + +L  + S   QF +FY C+       E F   L       ++P +
Sbjct: 351 TKDLYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGF-AEAFLEHLWKKLQDPSNPAI 410

Query: 468 TR----------------------------LVDWCLEYGKTVDADP----NPKAHKVFYS 527
            R                            LV+W   Y    D+      +   H  FYS
Sbjct: 411 IRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYS 470

Query: 528 GCQAIMYVLCFRMRSIL--EIPRLKSQLLLMPIGPVLTHRLSPLKVCLPSIVEEFLRQAK 587
            CQA+ Y   FR + +L   +      L  +    ++  +L+PLK+CLPS+V  F   A 
Sbjct: 471 ACQAVFYTFVFRHKQLLSGNLKEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFF---AA 530

Query: 588 VANLFTPSETFIF----NGLLESEYSKTYGG------IERLDMFFPFDPCLLKTCDRYLR 647
           + N +     +      N  +      T GG         LD FFPFDPC+LK   +++ 
Sbjct: 531 ITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQICTNPLDTFFPFDPCVLKRSKKFID 590

Query: 648 PHFVYWSMVRPTYDEEEDGGSSDEDVAEVFPDRIEENLMDDEAMARSYDDRDFDLDEFDS 651
           P +  W          ED   S E++ E F   +++++++DE       D DF   E   
Sbjct: 591 PIYQVW----------ED--MSAEELQE-FKKPMKKDIVEDE-------DDDFLKGEVPQ 624

[Close]

BLAST of CcUC05G082600 vs. ExPASy Swiss-Prot
Match: Q10110 (RNA polymerase I-specific transcription initiation factor rrn3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrn3 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.9e-19
Identity = 115/463 (24.84%), Postives = 197/463 (42.55%), Query Frame = 0


Query: 226 HGLTRKDEV---LSRVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTT--IYVEN 285
           H L R D +       H ALK + +LVP A   L   ++ +    +  ESL     Y+ N
Sbjct: 161 HMLYRPDSLAIHYEHAHMALKYVLELVPRAHSFLYSSILEEFP--YKDESLLAQMTYISN 220

Query: 286 MLRLEKGAMSEFVGRKILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDD 345
           +L + +   S  +   +L A++DK++ +DVEI               ++E++DDDE  D+
Sbjct: 221 VLSICEYVPS--IKGPVLHAIIDKIIQIDVEI---------------QVEVDDDDEEEDE 280

Query: 346 I--------NEDSS--------ELPRELSRKSLGGNVIA-----------ETLDSLIVLT 405
           +        N DS         E    +S +     ++            + LD L+   
Sbjct: 281 VVTDDDGTSNADSEVITASTLYERHTAISSEMTSSTILTPPSLTDTRQLMQQLDQLLYTL 340

Query: 406 FEHLE----SCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYACALDPDVCGERF 465
           F +L+    S  RD  L  V++ L+ SF  TVL  ++ ++ QF+IF+A  LDP+      
Sbjct: 341 FSYLDSNLKSTSRDRYL--VYNSLIKSFVNTVLKTFRCRYTQFLIFWASQLDPEFTD--- 400

Query: 466 AVSLADMFVSCNDPP----------------------------------LTRLVDWCLEY 525
            + L  +   C DP                                   +TR V+  L+ 
Sbjct: 401 -IFLGVLTEVCLDPSQPYTLRLSGAMYIGSYVARAKALEKNTIQIIVNMMTRWVEAYLDQ 460

Query: 526 GKTVDADPNPKAHKVFYSGCQAIMYVLCFRMRSIL---EIPRLKSQLLLMPIGPVLTH-- 585
            +   +D     H VFY+  Q+I Y+ CFR R +    E   ++ +      G  + H  
Sbjct: 461 CENELSDDLLSKHSVFYAINQSIFYIFCFRWRELCVSDESESMEPRPNEWIPGLEILHRS 520

Query: 586 ---RLSPLKVCLPSIVEEFLRQAKVANLFTPSETFIFNGLLESEYSKTYGGIERLDMFFP 611
              RL+PL+ C P+IV +F   AKVAN    +  ++++ + ++       G + +D +FP
Sbjct: 521 VLSRLNPLRYCSPNIVLQF---AKVANHL--NFMYVYSIIEQNRKGIFREGFDTMDAYFP 580

[Close]

BLAST of CcUC05G082600 vs. ExPASy TrEMBL
Match: A0A5A7U3Y2 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001870 PE=3 SV=1)

HSP 1 Score: 1090.5 bits (2819), Expect = 0.0e+00
Identity = 562/643 (87.40%), Postives = 589/643 (91.60%), Query Frame = 0


Query: 66  AQLHDMEDVNLTDAQLIDFVRGFLSSVSLGDNDGYNQLVGVIHHRDRLSPDDVALLVTCL 125
           AQLHDMEDVNLTDAQL+DF+RGFLSSVSLGD DGYNQLVGVIHHRDRLSPD+VALLVTCL
Sbjct: 10  AQLHDMEDVNLTDAQLVDFIRGFLSSVSLGDTDGYNQLVGVIHHRDRLSPDEVALLVTCL 69

Query: 126 KALSGAVSCIDIVLHESLLAAVSLSLNSESISRNFVVVMVARSQIFKMSLWDYGPNVMDA 185
           KALSGAVSCIDI+ HESLLAAVSL LNSES+S NFVVVM   SQIFKMSLWDYGPNVMD+
Sbjct: 70  KALSGAVSCIDIIQHESLLAAVSLCLNSESLSCNFVVVMEVLSQIFKMSLWDYGPNVMDS 129

Query: 186 LIELIISLAVSSGKYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLSRVHTALKDI 245
           LIELIISLAVS+GKYV+SCLDMLVNNFMPP SY DFLKKPHGLT+KDEVLSRVHTALKDI
Sbjct: 130 LIELIISLAVSNGKYVNSCLDMLVNNFMPPNSYMDFLKKPHGLTKKDEVLSRVHTALKDI 189

Query: 246 SDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRKILTALVDKL 305
           SDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGA+SEFVGRKILTALVDKL
Sbjct: 190 SDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGALSEFVGRKILTALVDKL 249

Query: 306 LDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRKSLGGNVIAET 365
           LDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSR+SLGGNVIAET
Sbjct: 250 LDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRRSLGGNVIAET 309

Query: 366 LDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYACALDPDVC 425
           LDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYAC+LDP+VC
Sbjct: 310 LDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYACSLDPEVC 369

Query: 426 GERFAVSLADMFVSCNDPP----------------------------LTRLVDWCLEYGK 485
           G RFAVSLADMFVSCNDPP                            L RLVDWCLEYG+
Sbjct: 370 GARFAVSLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGE 429

Query: 486 TVDADPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVLTHRLSPLKV 545
           T++ DPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGP+LTHRLSPLKV
Sbjct: 430 TLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKV 489

Query: 546 CLPSIVEEFLRQAKVANLFTPSETFIFNGLLESEYSKTYGGIERLDMFFPFDPCLLKTCD 605
           CLPSIVEEFL+QAKVANLFTPSETFIFNGLLESEYS+++GG+ERLDMFFPFDPCLLK CD
Sbjct: 490 CLPSIVEEFLQQAKVANLFTPSETFIFNGLLESEYSRSFGGLERLDMFFPFDPCLLKKCD 549

Query: 606 RYLRPHFVYWSMVRPTY----DEEEDGGSSDEDVAEVFPDRIEENLMDDEAMARSYDDRD 665
           RYLRPHFVYWSMVRPTY    ++EEDGGSSDED AEVFPD IEENLMDD AMARSYDD+D
Sbjct: 550 RYLRPHFVYWSMVRPTYAEEEEQEEDGGSSDED-AEVFPDIIEENLMDDVAMARSYDDQD 609

Query: 666 FDLDEFDSALNKMSITPRNSLQYQRDFVQMPSRIRPSMSPESL 677
           FDL   DS LN MSITPRNSLQY+ DFV+MPSRIRPSMSPESL
Sbjct: 610 FDL---DSGLNNMSITPRNSLQYRHDFVKMPSRIRPSMSPESL 648

[Close]

BLAST of CcUC05G082600 vs. ExPASy TrEMBL
Match: A0A1S3AV30 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Cucumis melo OX=3656 GN=LOC103483270 PE=3 SV=1)

HSP 1 Score: 1051.2 bits (2717), Expect = 1.8e-303
Identity = 545/643 (84.76%), Postives = 571/643 (88.80%), Query Frame = 0


Query: 66  AQLHDMEDVNLTDAQLIDFVRGFLSSVSLGDNDGYNQLVGVIHHRDRLSPDDVALLVTCL 125
           AQLHDMEDVNLTDAQL+DF+RGFLSSVSLGD DGYNQLVGVIHHRDRLSPD+VALLVTCL
Sbjct: 10  AQLHDMEDVNLTDAQLVDFIRGFLSSVSLGDTDGYNQLVGVIHHRDRLSPDEVALLVTCL 69

Query: 126 KALSGAVSCIDIVLHESLLAAVSLSLNSESISRNFVVVMVARSQIFKMSLWDYGPNVMDA 185
           KALSGAVSCIDI+ HESLLAA                       IFKMSLWDYGPNVMD+
Sbjct: 70  KALSGAVSCIDIIQHESLLAA-----------------------IFKMSLWDYGPNVMDS 129

Query: 186 LIELIISLAVSSGKYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLSRVHTALKDI 245
           LIELIISLAVS+GKYV+SCLDMLVNNFMPP SY DFLKKPHGLT+KDEVLSRVHTALKDI
Sbjct: 130 LIELIISLAVSNGKYVNSCLDMLVNNFMPPNSYMDFLKKPHGLTKKDEVLSRVHTALKDI 189

Query: 246 SDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRKILTALVDKL 305
           SDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGA+SEFVGRKILTALVDKL
Sbjct: 190 SDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGALSEFVGRKILTALVDKL 249

Query: 306 LDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRKSLGGNVIAET 365
           LDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSR+SLGGNVIAET
Sbjct: 250 LDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRRSLGGNVIAET 309

Query: 366 LDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYACALDPDVC 425
           LDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYAC+LDP+VC
Sbjct: 310 LDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYACSLDPEVC 369

Query: 426 GERFAVSLADMFVSCNDPP----------------------------LTRLVDWCLEYGK 485
           G RFAVSLADMFVSCNDPP                            L RLVDWCLEYG+
Sbjct: 370 GARFAVSLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGE 429

Query: 486 TVDADPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVLTHRLSPLKV 545
           T++ DPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGP+LTHRLSPLKV
Sbjct: 430 TLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKV 489

Query: 546 CLPSIVEEFLRQAKVANLFTPSETFIFNGLLESEYSKTYGGIERLDMFFPFDPCLLKTCD 605
           CLPSIVEEFL+QAKVANLFTPSETFIFNGLLESEYS+++GG+ERLDMFFPFDPCLLK CD
Sbjct: 490 CLPSIVEEFLQQAKVANLFTPSETFIFNGLLESEYSRSFGGLERLDMFFPFDPCLLKKCD 549

Query: 606 RYLRPHFVYWSMVRPTY----DEEEDGGSSDEDVAEVFPDRIEENLMDDEAMARSYDDRD 665
           RYLRPHFVYWSMVRPTY    ++EEDGGSSDED AEVFPD IEENLMDD AMARSYDD+D
Sbjct: 550 RYLRPHFVYWSMVRPTYAEEEEQEEDGGSSDED-AEVFPDIIEENLMDDVAMARSYDDQD 609

Query: 666 FDLDEFDSALNKMSITPRNSLQYQRDFVQMPSRIRPSMSPESL 677
           FDL   DS LN MSITPRNSLQY+ DFV+MPSRIRPSMSPESL
Sbjct: 610 FDL---DSGLNNMSITPRNSLQYRHDFVKMPSRIRPSMSPESL 625

[Close]

BLAST of CcUC05G082600 vs. ExPASy TrEMBL
Match: A0A5D3D051 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004710 PE=3 SV=1)

HSP 1 Score: 1051.2 bits (2717), Expect = 1.8e-303
Identity = 545/643 (84.76%), Postives = 571/643 (88.80%), Query Frame = 0


Query: 66  AQLHDMEDVNLTDAQLIDFVRGFLSSVSLGDNDGYNQLVGVIHHRDRLSPDDVALLVTCL 125
           AQLHDMEDVNLTDAQL+DF+RGFLSSVSLGD DGYNQLVGVIHHRDRLSPD+VALLVTCL
Sbjct: 10  AQLHDMEDVNLTDAQLVDFIRGFLSSVSLGDTDGYNQLVGVIHHRDRLSPDEVALLVTCL 69

Query: 126 KALSGAVSCIDIVLHESLLAAVSLSLNSESISRNFVVVMVARSQIFKMSLWDYGPNVMDA 185
           KALSGAVSCIDI+ HESLLAA                       IFKMSLWDYGPNVMD+
Sbjct: 70  KALSGAVSCIDIIQHESLLAA-----------------------IFKMSLWDYGPNVMDS 129

Query: 186 LIELIISLAVSSGKYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLSRVHTALKDI 245
           LIELIISLAVS+GKYV+SCLDMLVNNFMPP SY DFLKKPHGLT+KDEVLSRVHTALKDI
Sbjct: 130 LIELIISLAVSNGKYVNSCLDMLVNNFMPPNSYMDFLKKPHGLTKKDEVLSRVHTALKDI 189

Query: 246 SDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRKILTALVDKL 305
           SDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGA+SEFVGRKILTALVDKL
Sbjct: 190 SDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGALSEFVGRKILTALVDKL 249

Query: 306 LDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRKSLGGNVIAET 365
           LDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSR+SLGGNVIAET
Sbjct: 250 LDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRRSLGGNVIAET 309

Query: 366 LDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYACALDPDVC 425
           LDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYAC+LDP+VC
Sbjct: 310 LDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYACSLDPEVC 369

Query: 426 GERFAVSLADMFVSCNDPP----------------------------LTRLVDWCLEYGK 485
           G RFAVSLADMFVSCNDPP                            L RLVDWCLEYG+
Sbjct: 370 GARFAVSLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGE 429

Query: 486 TVDADPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVLTHRLSPLKV 545
           T++ DPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGP+LTHRLSPLKV
Sbjct: 430 TLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKV 489

Query: 546 CLPSIVEEFLRQAKVANLFTPSETFIFNGLLESEYSKTYGGIERLDMFFPFDPCLLKTCD 605
           CLPSIVEEFL+QAKVANLFTPSETFIFNGLLESEYS+++GG+ERLDMFFPFDPCLLK CD
Sbjct: 490 CLPSIVEEFLQQAKVANLFTPSETFIFNGLLESEYSRSFGGLERLDMFFPFDPCLLKKCD 549

Query: 606 RYLRPHFVYWSMVRPTY----DEEEDGGSSDEDVAEVFPDRIEENLMDDEAMARSYDDRD 665
           RYLRPHFVYWSMVRPTY    ++EEDGGSSDED AEVFPD IEENLMDD AMARSYDD+D
Sbjct: 550 RYLRPHFVYWSMVRPTYAEEEEQEEDGGSSDED-AEVFPDIIEENLMDDVAMARSYDDQD 609

Query: 666 FDLDEFDSALNKMSITPRNSLQYQRDFVQMPSRIRPSMSPESL 677
           FDL   DS LN MSITPRNSLQY+ DFV+MPSRIRPSMSPESL
Sbjct: 610 FDL---DSGLNNMSITPRNSLQYRHDFVKMPSRIRPSMSPESL 625

[Close]

BLAST of CcUC05G082600 vs. ExPASy TrEMBL
Match: A0A0A0L7G6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122360 PE=3 SV=1)

HSP 1 Score: 1042.3 bits (2694), Expect = 8.6e-301
Identity = 540/642 (84.11%), Postives = 566/642 (88.16%), Query Frame = 0


Query: 66  AQLHDMEDVNLTDAQLIDFVRGFLSSVSLGDNDGYNQLVGVIHHRDRLSPDDVALLVTCL 125
           AQLH MEDVNLTDAQL+DF+RGFLSSVSLGD DGYNQLVGVIHHRDRLSPD+VALLVTCL
Sbjct: 10  AQLHAMEDVNLTDAQLVDFIRGFLSSVSLGDIDGYNQLVGVIHHRDRLSPDEVALLVTCL 69

Query: 126 KALSGAVSCIDIVLHESLLAAVSLSLNSESISRNFVVVMVARSQIFKMSLWDYGPNVMDA 185
           KALSGAVSCIDI+LHESLLAA                       IFKMSLWDYG NVMDA
Sbjct: 70  KALSGAVSCIDIILHESLLAA-----------------------IFKMSLWDYGSNVMDA 129

Query: 186 LIELIISLAVSSGKYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLSRVHTALKDI 245
           LIELIISLAVS+GKYVDSCLDMLVNNFMPP SY D LKKPHGLTRK+EVLSRVHTALKDI
Sbjct: 130 LIELIISLAVSNGKYVDSCLDMLVNNFMPPNSYMDLLKKPHGLTRKEEVLSRVHTALKDI 189

Query: 246 SDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRKILTALVDKL 305
           SDLVPLAPLRLEQ VVHKMQRVFF ESLTTIYVENMLRLEKGA+SEFVGRKILTALVDKL
Sbjct: 190 SDLVPLAPLRLEQKVVHKMQRVFFNESLTTIYVENMLRLEKGALSEFVGRKILTALVDKL 249

Query: 306 LDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRKSLGGNVIAET 365
           LDLDVEIGWDDILQDDFSKGIFEMELEDDD+TTDDINEDSSELPRELSR+SLGGNVIAET
Sbjct: 250 LDLDVEIGWDDILQDDFSKGIFEMELEDDDDTTDDINEDSSELPRELSRRSLGGNVIAET 309

Query: 366 LDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYACALDPDVC 425
           LDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQF++FYAC+LDP+VC
Sbjct: 310 LDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFYACSLDPEVC 369

Query: 426 GERFAVSLADMFVSCNDPP----------------------------LTRLVDWCLEYGK 485
           G RFA+SLADMFVSCNDPP                            L RLVDWCLEYGK
Sbjct: 370 GARFAISLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGK 429

Query: 486 TVDADPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVLTHRLSPLKV 545
           T++ DPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGP+LTHRLSPLKV
Sbjct: 430 TLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKV 489

Query: 546 CLPSIVEEFLRQAKVANLFTPSETFIFNGLLESEYSKTYGGIERLDMFFPFDPCLLKTCD 605
           CLPSIVEEFLRQAKVANLFTPSE FIFNGLLES+YS+++GG+ERLDMFFPFDPCLLK CD
Sbjct: 490 CLPSIVEEFLRQAKVANLFTPSENFIFNGLLESDYSRSFGGLERLDMFFPFDPCLLKKCD 549

Query: 606 RYLRPHFVYWSMVRPTYDEEE-----DGGSSDEDVAEVFPDRIEENLMDDEAMARSYDDR 665
           RYLRPHFVYWSMVRPTYDEEE     DGGSSDED AE+FPDRI+ENLMDDEAMA SYDD+
Sbjct: 550 RYLRPHFVYWSMVRPTYDEEEEEEEDDGGSSDED-AEIFPDRIDENLMDDEAMAISYDDQ 609

Query: 666 DFDLDEFDSALNKMSITPRNSLQYQRDFVQMPSRIRPSMSPE 675
           DFDL   DS LNKMSITPRNSLQY+ DFVQMPSRIRPSMSPE
Sbjct: 610 DFDL---DSGLNKMSITPRNSLQYRCDFVQMPSRIRPSMSPE 624

[Close]

BLAST of CcUC05G082600 vs. ExPASy TrEMBL
Match: A0A6J1F0A3 (RNA polymerase I-specific transcription initiation factor RRN3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438313 PE=3 SV=1)

HSP 1 Score: 1032.7 bits (2669), Expect = 6.8e-298
Identity = 536/640 (83.75%), Postives = 565/640 (88.28%), Query Frame = 0


Query: 66  AQLHDMEDVNLTDAQLIDFVRGFLSSVSLGDNDGYNQLVGVIHHRDRLSPDDVALLVTCL 125
           AQ  DME VN TD QL+DF+RGFL+SVSLG+ DGY+QLVGVIHHR RLS D+VALLVTCL
Sbjct: 10  AQFQDMEGVNFTDDQLVDFIRGFLTSVSLGNTDGYHQLVGVIHHRGRLSADEVALLVTCL 69

Query: 126 KALSGAVSCIDIVLHESLLAAVSLSLNSESISRNFVVVMVARSQIFKMSLWDYGPNVMDA 185
           KALSGAVSCID+VLHESLLAA                       IFKMSLWDYGPNVMDA
Sbjct: 70  KALSGAVSCIDVVLHESLLAA-----------------------IFKMSLWDYGPNVMDA 129

Query: 186 LIELIISLAVSSGKYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLSRVHTALKDI 245
           LIELI SLAVSSGKYVDSCLDMLV NFMPP+SYKDFLKKPHGLTRKDEVLSRVHTALKDI
Sbjct: 130 LIELITSLAVSSGKYVDSCLDMLVTNFMPPHSYKDFLKKPHGLTRKDEVLSRVHTALKDI 189

Query: 246 SDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRKILTALVDKL 305
           SDLVPLAPLRLE IVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRKILTALVDKL
Sbjct: 190 SDLVPLAPLRLELIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRKILTALVDKL 249

Query: 306 LDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRKSLGGNVIAET 365
           LDLDVEIGWDDILQDDFSKGIFE+ELEDD+E+TDDI+EDSSELPRELSRKSLGGNVIAET
Sbjct: 250 LDLDVEIGWDDILQDDFSKGIFEIELEDDNESTDDIDEDSSELPRELSRKSLGGNVIAET 309

Query: 366 LDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYACALDPDVC 425
           LDSLIVLTFEHLESCERDGRL+EVFDILLLSFQRTVLTAYKSKFAQFVIFYACALDP+VC
Sbjct: 310 LDSLIVLTFEHLESCERDGRLSEVFDILLLSFQRTVLTAYKSKFAQFVIFYACALDPEVC 369

Query: 426 GERFAVSLADMFVSCNDPPLT----------------------------RLVDWCLEYGK 485
           G RFAV+LADMFVSCN  PLT                            RLVDWCLEYGK
Sbjct: 370 GARFAVTLADMFVSCNGLPLTRMSAISYLASYLSRGKFLSTSLVTTILKRLVDWCLEYGK 429

Query: 486 TVDADPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVLTHRLSPLKV 545
           T D D NPKAHK+FYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIG +LTHRLSPLKV
Sbjct: 430 THDVDLNPKAHKIFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGRILTHRLSPLKV 489

Query: 546 CLPSIVEEFLRQAKVANLFTPSETFIFNGLLESEYSKTYGGIERLDMFFPFDPCLLKTCD 605
           CLPSIVEEFLRQAKVANLFTPSETFIFNGLLESEYSKT+GGIERLDMFFP+DPCLLK CD
Sbjct: 490 CLPSIVEEFLRQAKVANLFTPSETFIFNGLLESEYSKTFGGIERLDMFFPYDPCLLKRCD 549

Query: 606 RYLRPHFVYWSMVRPTYD-EEEDGGSSDEDVAEVFPDRIEENLMDDEAMARSYDDRDFDL 665
           RYLRP+FVYWSMVRPTYD EEED GSSDEDVAEVFPD+IEENLMDDEAMA SYD+R+FDL
Sbjct: 550 RYLRPYFVYWSMVRPTYDEEEEDEGSSDEDVAEVFPDKIEENLMDDEAMATSYDNREFDL 609

Query: 666 DEFDSALNKMSITPRNSLQYQRDFVQMPSRIRPSMSPESL 677
           DEFD+AL+KMSITPRNSL +++D V+MPSRIRPSMSPESL
Sbjct: 610 DEFDNALDKMSITPRNSLPFRQDCVRMPSRIRPSMSPESL 626

[Close]

BLAST of CcUC05G082600 vs. TAIR 10
Match: AT2G34750.1 (RNA polymerase I specific transcription initiation factor RRN3 protein )

HSP 1 Score: 537.7 bits (1384), Expect = 1.3e-152
Identity = 305/640 (47.66%), Postives = 420/640 (65.62%), Query Frame = 0


Query: 71  MEDVNLTDAQLIDFVRGFLSSVSLGDNDGYNQLVGVIHH--RDRLSPDDVALLVTCLKAL 130
           +++V+L+D QL+  VR  L+SV  GD+D Y+++VGV+    ++   PD VA L T LKAL
Sbjct: 20  VDNVDLSDTQLVQTVRKALTSVKTGDSDLYSEMVGVMARDIKEFKDPDVVAQLETVLKAL 79

Query: 131 SGAVSCIDIVLHESLLAAVSLSLNSESISRNFVVVMVARSQIFKMSLWDYGPNVMDALIE 190
           SGAV+CID++ H+ LL+A                       +F+M LWD+ P+VMDAL+ 
Sbjct: 80  SGAVACIDVLHHQKLLSA-----------------------LFRMKLWDHRPDVMDALVN 139

Query: 191 LIISLAVSSGKYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLSRVHTALKDISDL 250
           L+ISLAV+SGKY+DSCL+MLV+NF+PP    + L     L +K +VLSRVH AL  IS L
Sbjct: 140 LVISLAVTSGKYLDSCLNMLVSNFVPPPWVVNNLSHSRILNKKIDVLSRVHAALLKISIL 199

Query: 251 VPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRKILTALVDKLLDL 310
           VPL P RL  ++  +M ++  K+    IYVE++L+LE  ++ +  G  IL  ++++L DL
Sbjct: 200 VPLTPSRLVPMLFQQMPKMHKKDHSIVIYVESLLKLENSSIGQVGGSMILGMVMERLRDL 259

Query: 311 DVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELP-RELSRKSLGGNVIAETLD 370
           D+EI WDDI QDD S+G+F+MELED  E T     D  ELP   L + +  G+++++ LD
Sbjct: 260 DLEIEWDDIPQDDSSRGMFDMELEDAAEGT---MNDGDELPVGPLKQDTSDGSIVSKLLD 319

Query: 371 SLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYACALDPDVCGE 430
            L+V+ FEHLESC+ DGRL++VF+ L  SF+  +L  YKSKF QF+IFYAC+LDP+ CG 
Sbjct: 320 KLMVVAFEHLESCQNDGRLDQVFESLFKSFENFILNTYKSKFTQFLIFYACSLDPENCGV 379

Query: 431 RFAVSLADMFVSCND----------------------------PPLTRLVDWCLEYGKTV 490
           +FA  L ++F+S N                               L RL+D C+ Y +T 
Sbjct: 380 KFASKLVEIFLSSNKHVATRMSAVAYLASFLARGKFLPVSFVASMLKRLIDECVGYCRTC 439

Query: 491 DADPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVLTHRLSPLKVCL 550
           + D  P+AH++F+SGCQAIMYVLCFRMRSIL++PR +SQ  L P+  +L H+L+PL VCL
Sbjct: 440 NDDTRPEAHQIFFSGCQAIMYVLCFRMRSILDVPRFRSQ--LTPLESILMHKLNPLMVCL 499

Query: 551 PSIVEEFLRQAKVANLFTPSETFIFNGLLESEYSKTYGGIERLDMFFPFDPCLLKTCDRY 610
           PS+V EFLRQAK   LF  S++FIF+ LLESE S+ +GG ERLD FFPFDPCLLK+ + +
Sbjct: 500 PSVVAEFLRQAKEGGLFIVSDSFIFDDLLESELSRAFGGFERLDTFFPFDPCLLKSSNSF 559

Query: 611 LRPHFVYWSMVRPTYDEEEDGGSSDEDVAEVFPDRIEENLMDDEAMARSYDDRDFDLDEF 670
           + P+F+YWSMV+ TYDE++D    D D AEV  +  E++  DDEA             + 
Sbjct: 560 ISPNFIYWSMVKATYDEDDD----DND-AEVIVNGDEDSDEDDEA-------------DL 613

Query: 671 DSALNKMSITPRNSL--QYQRD-FVQMPSRIRPSMSPESL 677
           D ALNKMSITP++S   + +RD  ++MPSRIRPS SPESL
Sbjct: 620 DYALNKMSITPKHSFKNKMERDRLLRMPSRIRPSTSPESL 613

[Close]

BLAST of CcUC05G082600 vs. TAIR 10
Match: AT1G30590.1 (RNA polymerase I specific transcription initiation factor RRN3 protein )

HSP 1 Score: 468.4 bits (1204), Expect = 9.8e-132
Identity = 283/647 (43.74%), Postives = 385/647 (59.51%), Query Frame = 0


Query: 56  VGSQSNPLVSAQLHDMEDVNLTDAQLIDFVRGFLSSVSLGDNDGYNQLVGVIHHRDRLSP 115
           +G++  P V    + M++   TD  L+  VR  L+SV  GD D Y+QL  V+   +    
Sbjct: 1   MGAEEFPSVPFNSNAMDNAEYTDTDLVFAVRKALASVQNGDTDDYSQLKTVMCLTEDADF 60

Query: 116 DDVALLVTCLKALSGAVSCIDIVLHESLLAAVSLSLNSESISRNFVVVMVARSQIFKMSL 175
           D VA L T LK+LS +V+ ID+V H+ LL A+SL  +S                      
Sbjct: 61  DAVAQLETVLKSLSVSVAWIDLVHHKDLLEAMSLWYHS---------------------- 120

Query: 176 WDYGPNVMDALIELIISLAVSSGKYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVL 235
             + P+VMDAL++LIISLA +SGKY+D CL+MLV NF  P ++K  + +   + +  EV 
Sbjct: 121 --HRPSVMDALVDLIISLAATSGKYLDPCLNMLVRNFSQP-TFKHKVSQTQLVKKMQEVH 180

Query: 236 SRVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGR 295
            RVH AL  IS L+PLAP  L  I+   M+++  K+     YV+N+LRLE  ++ E VG 
Sbjct: 181 PRVHAALHKISYLIPLAPWNLVSILAQNMRKIDKKDPSIVTYVDNLLRLENSSIGEVVGS 240

Query: 296 KILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRK 355
            IL  +++++LDLD+  G      DD + G+F+MELED  E+T  +NE        L + 
Sbjct: 241 VILMMVMERMLDLDLVSGC-----DDSNGGMFDMELEDAVEST--MNEGDEFPVGALKQN 300

Query: 356 SLGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIF 415
           + GGNV++E LD L+VL F HLESC+   RL+EVF+IL  SF+  +L  YK+KF+QF++F
Sbjct: 301 TSGGNVVSELLDKLMVLFFHHLESCQNSDRLDEVFEILFKSFENYILNTYKTKFSQFLMF 360

Query: 416 YACALDPDVCGERFAVSLADMFVSCNDPPLT----------------------------R 475
           YAC+LDP+ CG RFA  L D+++S N   LT                            R
Sbjct: 361 YACSLDPENCGVRFASKLLDIYLSSNTCRLTRMSAVAYLASYLSRGKFLPASFVASMLKR 420

Query: 476 LVDWCLEYGKTVDADPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPV 535
           LVD C EY  T + D  P+AH+VFYSGCQAI+YVLCFRMRSI+EIPR +SQ     +  +
Sbjct: 421 LVDECAEYCGTCNDDVKPEAHQVFYSGCQAILYVLCFRMRSIVEIPRFQSQ--FRSLESI 480

Query: 536 LTHRLSPLKVCLPSIVEEFLRQAKVANLFTPSETFIFNGLLESEYSKTYGGIERLDMFFP 595
           L+H+L+PL VCLPS+V EFL+QAK   LF  SE+FIF+ L ESE S+ +GG ERLD FFP
Sbjct: 481 LSHKLNPLLVCLPSVVSEFLKQAKAGGLFIVSESFIFDDLHESELSRAFGGFERLDTFFP 540

Query: 596 FDPCLLKTCDRYLRPHFVYWSMVRPTYDEEEDGGSSDEDVAEVFPDRIEENLMDDEAMAR 655
           FDPCLLK    Y+ P+F +WSMV+ TY E+ D    DE +     D  EE   DD+    
Sbjct: 541 FDPCLLKMSSSYISPNFNFWSMVKTTYGEDGDEELCDEVIVNGDADSAEE--PDDDV--- 598

Query: 656 SYDDRDFDLDEFDSALNKMSITPRNSLQYQRD-FVQMPSRIRPSMSP 674
                     E DS +N MS TP++S   + +  ++MPSRIRPS SP
Sbjct: 601 ----------ELDSEMNTMSTTPKHSFMRETERLLKMPSRIRPSTSP 598

[Close]

BLAST of CcUC05G082600 vs. TAIR 10
Match: AT2G39240.1 (RNA polymerase I specific transcription initiation factor RRN3 protein )

HSP 1 Score: 378.6 bits (971), Expect = 1.0e-104
Identity = 255/654 (38.99%), Postives = 357/654 (54.59%), Query Frame = 0


Query: 70  DMEDVNLTDAQLIDFVRGFLSSVSLGDNDGYNQLVGVIHHRDRLSPDD------------ 129
           ++E  +L+D  L+  +R  L+S   GD D YN+LV +++ + + S DD            
Sbjct: 5   EVETADLSDKALVSAIREVLASAQSGDTDQYNELVQLMYIKKKKSGDDAMAQPEVPDDVD 64

Query: 130 -VALLVTCLKALSGAVSCIDIVLHESLLAAVSLSLNSESISRNFVVVMVARSQIFKMSLW 189
            VA   T LK LS +V+C+D V H  LL                         I    +W
Sbjct: 65  VVAQRETLLKILSHSVACLDDVHHNHLL-----------------------QLILGTRIW 124

Query: 190 DYGPNVMDALIELIISLAVSSGKYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKD-EVL 249
           D+ PNV+ AL++LIISLA +SGK++ SCLD LV+N            +P  L  K  EVL
Sbjct: 125 DHKPNVIYALLDLIISLATTSGKHLSSCLDTLVSNLR---------SQPRKLDNKMLEVL 184

Query: 250 SRVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTI--YVENMLRLEKGA-MSEF 309
           SRVH AL  IS LVPLAP  L  I+   M  V  K  L  +  YV+N+L+LE  + + + 
Sbjct: 185 SRVHAALHKISYLVPLAPSILLPILAQSMPSVHDKARLQVVVPYVKNLLKLENSSIIGKV 244

Query: 310 VGRKILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPREL 369
           VG+ IL  ++ +  DLD EI  DD LQ+D S  +F+MEL+                    
Sbjct: 245 VGKDILMMVMGRFRDLDSEIECDDNLQNDSSLAMFDMELD-------------------- 304

Query: 370 SRKSLGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQF 429
              ++ G ++++ LD L+V +F HL+SC+  GRL+EVF+ L  SF+  +L   K KF+QF
Sbjct: 305 --VAVEGTLVSKLLDDLMVESFNHLKSCQDAGRLDEVFENLFESFENLILNTQKLKFSQF 364

Query: 430 VIFYACALDPDVCGERFAVSLADMFVSCNDPPLT-------------------------- 489
           ++FYAC+LDP+ CG +FA  L + F+S N+  +T                          
Sbjct: 365 LMFYACSLDPENCGVKFASKLLEKFLSSNNNQVTRTNAVTYLASYLARANFLSASFVASM 424

Query: 490 --RLVDWCLEYGKTVDADPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPI 549
             RLVD C +Y +T + D  P+ H+VFYSGCQAI+YVLCFRMRSILE+P  +SQ  L P+
Sbjct: 425 LKRLVDECADYCRTCNDDARPEVHQVFYSGCQAILYVLCFRMRSILEVPHFQSQ--LTPL 484

Query: 550 GPVLTHRLSPLKVCLPSIVEEFLRQAKVANLFTPSETFIFNGLLESEYSKTYGGIERLDM 609
             VL+H+L PL+VCL S+V EFL QAK   LF  S+ FIF+ L ESE S+  GG      
Sbjct: 485 ESVLSHKLDPLRVCLSSVVSEFLIQAKACGLFIVSDAFIFDDLSESELSRALGG------ 544

Query: 610 FFPFDPCLLKTCDRYLRPHFVYWSMVRPTYDEEEDGGSSDEDVAEVFPDRIEENLMDDEA 669
           FFPF P LL+  +  + PHF+  S V+ TY++ E     D D                  
Sbjct: 545 FFPF-PWLLEKSNSLISPHFIKRSEVKKTYEQAEVTVYGDTD------------------ 573

Query: 670 MARSYDDRDFDLDEFDSALNKMSITPRNSLQYQRD-FVQMPSRIRPSMSP-ESL 677
              + +D D D+D  D+ +NKMSITP++S+ ++ +  ++MPSRI PS SP ESL
Sbjct: 605 ---NEEDSDDDVDP-DNEMNKMSITPKHSVMHETERLLKMPSRISPSTSPRESL 573

The following BLAST results are available for this feature:

BLAST of CcUC05G082600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896673.1	0.0e+00	86.54	RNA polymerase I-specific transcription initiation factor RRN3-like [Benincasa h...	[more]
KAA0048966.1	0.0e+00	87.40	RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis melo var...	[more]
XP_038901148.1	0.0e+00	86.85	RNA polymerase I-specific transcription initiation factor RRN3-like [Benincasa h...	[more]
XP_008438040.1	3.8e-303	84.76	PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Cucum...	[more]
XP_004133864.1	1.8e-300	84.11	RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis sativus]...	[more]

BLAST of CcUC05G082600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B2RS91	2.3e-24	24.78	RNA polymerase I-specific transcription initiation factor RRN3 OS=Mus musculus O...	[more]
Q5R4N9	6.8e-21	25.09	RNA polymerase I-specific transcription initiation factor RRN3 OS=Pongo abelii O...	[more]
Q9NYV6	7.6e-20	24.59	RNA polymerase I-specific transcription initiation factor RRN3 OS=Homo sapiens O...	[more]
Q10110	2.9e-19	24.84	RNA polymerase I-specific transcription initiation factor rrn3 OS=Schizosaccharo...	[more]

BLAST of CcUC05G082600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3Y2	0.0e+00	87.40	RNA polymerase I-specific transcription initiation factor RRN3 OS=Cucumis melo v...	[more]
A0A1S3AV30	1.8e-303	84.76	RNA polymerase I-specific transcription initiation factor RRN3 OS=Cucumis melo O...	[more]
A0A5D3D051	1.8e-303	84.76	RNA polymerase I-specific transcription initiation factor RRN3 OS=Cucumis melo v...	[more]
A0A0A0L7G6	8.6e-301	84.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122360 PE=3 SV=1	[more]
A0A6J1F0A3	6.8e-298	83.75	RNA polymerase I-specific transcription initiation factor RRN3-like isoform X1 O...	[more]

BLAST of CcUC05G082600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34750.1	1.3e-152	47.66	RNA polymerase I specific transcription initiation factor RRN3 protein	[more]
AT1G30590.1	9.8e-132	43.74	RNA polymerase I specific transcription initiation factor RRN3 protein	[more]
AT2G39240.1	1.0e-104	38.99	RNA polymerase I specific transcription initiation factor RRN3 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007991	RNA polymerase I specific transcription initiation factor RRN3	PFAM	PF05327	RRN3	coord: 446..591 e-value: 1.3E-36 score: 126.3 coord: 76..448 e-value: 3.2E-57 score: 194.3
IPR007991	RNA polymerase I specific transcription initiation factor RRN3	PANTHER	PTHR12790	TRANSCRIPTION INITIATION FACTOR IA RRN3	coord: 445..666 coord: 73..447

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC05G082600.1	CcUC05G082600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006361	transcription initiation from RNA polymerase I promoter
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001042	RNA polymerase I core binding
molecular_function	GO:0001181	RNA polymerase I general transcription initiation factor activity
molecular_function	GO:0003743	translation initiation factor activity