CcUC04G076870 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC04G076870
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptionribosomal protein L5
LocationCicolChr04: 31918467 .. 31918925 (-)
RNA-Seq ExpressionCcUC04G076870
SyntenyCcUC04G076870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTCACTTGATTTTCATTACGAAGATATATCACGTCAGGATCCGTTGCTCAAACTGAATCACGCCAACGTTATGGAAGTTCCTGGATCGTGTGAAATAAGAGTCGTTCCAAAGGCACCTTATGATTTCATAATAAAAAATGGAAAATTGGCTATGGAGATTTTGCGCGGTCAGAAATTTATACAGACACAAAGGGGTTCGACAGGAAAGTCGTTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCACGACAAAGCACTCTTCGAGGGCATGGAATGTTGAATTTTTCGGTCAGAATCTCGACAGTAATGTCTCTCTTAGATTCTCCTGTCGAAATACGGGACAACTCCATTAATTCTCGATGGAAACAGAGTTTTGTGAATTCTCCCCGGAACTGGAAGATCATTTCGAGATCTTCGAACATATTCTAG

mRNA sequence

ATGTTTTCACTTGATTTTCATTACGAAGATATATCACGTCAGGATCCGTTGCTCAAACTGAATCACGCCAACGTTATGGAAGTTCCTGGATCGTGTGAAATAAGAGTCGTTCCAAAGGCACCTTATGATTTCATAATAAAAAATGGAAAATTGGCTATGGAGATTTTGCGCGGTCAGAAATTTATACAGACACAAAGGGGTTCGACAGGAAAGTCGTTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCACGACAAAGCACTCTTCGAGGGCATGGAATGTTGAATTTTTCGGTCAGAATCTCGACAGTAATGTCTCTCTTAGATTCTCCTGTCGAAATACGGGACAACTCCATTAATTCTCGATGGAAACAGAGTTTTGTGAATTCTCCCCGGAACTGGAAGATCATTTCGAGATCTTCGAACATATTCTAG

Coding sequence (CDS)

ATGTTTTCACTTGATTTTCATTACGAAGATATATCACGTCAGGATCCGTTGCTCAAACTGAATCACGCCAACGTTATGGAAGTTCCTGGATCGTGTGAAATAAGAGTCGTTCCAAAGGCACCTTATGATTTCATAATAAAAAATGGAAAATTGGCTATGGAGATTTTGCGCGGTCAGAAATTTATACAGACACAAAGGGGTTCGACAGGAAAGTCGTTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCACGACAAAGCACTCTTCGAGGGCATGGAATGTTGAATTTTTCGGTCAGAATCTCGACAGTAATGTCTCTCTTAGATTCTCCTGTCGAAATACGGGACAACTCCATTAATTCTCGATGGAAACAGAGTTTTGTGAATTCTCCCCGGAACTGGAAGATCATTTCGAGATCTTCGAACATATTCTAG

Protein sequence

MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSFVNSPRNWKIISRSSNIF
Homology
[Close]
BLAST of CcUC04G076870 vs. NCBI nr
Match: YP_009913650.1 (ribosomal protein L5 [Luffa acutangula] >QLJ93020.1 ribosomal protein L5 [Luffa acutangula])

HSP 1 Score: 248.8 bits (634), Expect = 2.9e-62
Identity = 124/135 (91.85%), Postives = 127/135 (94.07%), Query Frame = 0 

Query: 1   MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQK 60
           MFSLDFHYED+SRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEI RGQK
Sbjct: 1   MFSLDFHYEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK 60

Query: 61  FIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMLNFSVRISTVMSLLDSPV 120
           FIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGM NFSVRISTVMSLLDSPV
Sbjct: 61  FIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPV 120

Query: 121 EIRDNSINSRWKQSF 136
           EIR+NSI    +  F
Sbjct: 121 EIRENSIQFSMETEF 135

[Close]
BLAST of CcUC04G076870 vs. NCBI nr
Match: YP_009430373.1 (ribosomal protein L5 [Bupleurum falcatum] >YP_010035061.1 ribosomal protein L7 [Glycyrrhiza uralensis] >QWX88279.1 ribosomal protein L5 [Glycyrrhiza glabra] >ARR27504.1 ribosomal protein L5 [Bupleurum falcatum] >QOX10084.1 ribosomal protein L7 [Glycyrrhiza uralensis] >QVY59152.1 ribosomal protein L7 [Glycyrrhiza uralensis])

HSP 1 Score: 242.3 bits (617), Expect = 2.8e-60
Identity = 121/135 (89.63%), Postives = 125/135 (92.59%), Query Frame = 0 

Query: 1   MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQK 60
           MF L+FHYED+SRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEI RGQK
Sbjct: 1   MFPLNFHYEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK 60

Query: 61  FIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMLNFSVRISTVMSLLDSPV 120
           FIQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGHGM NFSVRISTVMSLLDSPV
Sbjct: 61  FIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPV 120

Query: 121 EIRDNSINSRWKQSF 136
           EIR+NSI    +  F
Sbjct: 121 EIRENSIQFSMETEF 135

[Close]
BLAST of CcUC04G076870 vs. NCBI nr
Match: YP_009430372.1 (orf229 [Bupleurum falcatum] >ARR27505.1 orf229 [Bupleurum falcatum])

HSP 1 Score: 242.3 bits (617), Expect = 2.8e-60
Identity = 121/135 (89.63%), Postives = 125/135 (92.59%), Query Frame = 0 

Query: 1   MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQK 60
           MF L+FHYED+SRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEI RGQK
Sbjct: 66  MFPLNFHYEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK 125

Query: 61  FIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMLNFSVRISTVMSLLDSPV 120
           FIQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGHGM NFSVRISTVMSLLDSPV
Sbjct: 126 FIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPV 185

Query: 121 EIRDNSINSRWKQSF 136
           EIR+NSI    +  F
Sbjct: 186 EIRENSIQFSMETEF 200

[Close]
BLAST of CcUC04G076870 vs. NCBI nr
Match: YP_007516856.1 (ribosomal protein subunit L5 [Glycine max] >YP_009532801.1 ribosomal protein L5 [Glycine soja] >QWX88244.1 ribosomal protein L5 [Robinia pseudoacacia] >QXE45615.1 ribosomal protein L5 [Pachyrhizus erosus] >AFR34300.1 ribosomal protein subunit L5 [Glycine max] >AYD72949.1 ribosomal protein L5 [Glycine soja])

HSP 1 Score: 241.5 bits (615), Expect = 4.7e-60
Identity = 121/135 (89.63%), Postives = 124/135 (91.85%), Query Frame = 0 

Query: 1   MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQK 60
           MF L FHYED+SRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEI RGQK
Sbjct: 1   MFPLHFHYEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK 60

Query: 61  FIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMLNFSVRISTVMSLLDSPV 120
           FIQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGHGM NFSVRISTVMSLLDSPV
Sbjct: 61  FIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPV 120

Query: 121 EIRDNSINSRWKQSF 136
           EIR+NSI    +  F
Sbjct: 121 EIRENSIQFSMETEF 135

[Close]
BLAST of CcUC04G076870 vs. NCBI nr
Match: XP_020240384.1 (uncharacterized protein LOC109819169 [Cajanus cajan])

HSP 1 Score: 241.5 bits (615), Expect = 4.7e-60
Identity = 121/135 (89.63%), Postives = 124/135 (91.85%), Query Frame = 0 

Query: 1   MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQK 60
           MF L FHYED+SRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEI RGQK
Sbjct: 1   MFPLHFHYEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK 60

Query: 61  FIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMLNFSVRISTVMSLLDSPV 120
           FIQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGHGM NFSVRISTVMSLLDSPV
Sbjct: 61  FIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPV 120

Query: 121 EIRDNSINSRWKQSF 136
           EIR+NSI    +  F
Sbjct: 121 EIRENSIQFSMETEF 135

[Close]
BLAST of CcUC04G076870 vs. ExPASy Swiss-Prot
Match: P42793 (60S ribosomal protein L5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL5 PE=1 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 5.6e-56
Identity = 112/135 (82.96%), Postives = 117/135 (86.67%), Query Frame = 0 

Query: 1   MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQK 60
           MF L+FHYED+ RQD LLKLN+ANVMEVPG CEIRVVPKAPY+FIIKNGKLAMEI  GQK
Sbjct: 1   MFPLNFHYEDVLRQDLLLKLNYANVMEVPGLCEIRVVPKAPYNFIIKNGKLAMEIPCGQK 60

Query: 61  FIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMLNFSVRISTVMSLLDSPV 120
           FIQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGHGM NF VRI TVMSLLD PV
Sbjct: 61  FIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNFLVRILTVMSLLDFPV 120

Query: 121 EIRDNSINSRWKQSF 136
           EIR NSI    +  F
Sbjct: 121 EIRKNSIQFSMETEF 135

[Close]
BLAST of CcUC04G076870 vs. ExPASy Swiss-Prot
Match: Q05492 (60S ribosomal protein L5, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPL5 PE=2 SV=2)

HSP 1 Score: 213.8 bits (543), Expect = 1.4e-54
Identity = 111/137 (81.02%), Postives = 118/137 (86.13%), Query Frame = 0 

Query: 1   MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPK--APYDFIIKNGKLAMEILRG 60
           MF L+FHYED+ RQD LLKLN ANVMEVPG CEIR+VPK  + YDFIIKNGKLAMEILRG
Sbjct: 1   MFPLNFHYEDVLRQDLLLKLNLANVMEVPGLCEIRIVPKTSSTYDFIIKNGKLAMEILRG 60

Query: 61  QKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMLNFSVRISTVMSLLDS 120
           QKFIQT+RGSTGKSFRSNPFLESNKDKGYVSDLARQS LRGHGM NF VRI TVMSLLDS
Sbjct: 61  QKFIQTERGSTGKSFRSNPFLESNKDKGYVSDLARQSILRGHGMSNFLVRILTVMSLLDS 120

Query: 121 PVEIRDNSINSRWKQSF 136
            VEIR+NSI    +  F
Sbjct: 121 RVEIRENSIQFSMETEF 137

[Close]
BLAST of CcUC04G076870 vs. ExPASy Swiss-Prot
Match: P49388 (60S ribosomal protein L5, mitochondrial OS=Brassica napus OX=3708 GN=RPL5 PE=3 SV=2)

HSP 1 Score: 206.8 bits (525), Expect = 1.7e-52
Identity = 106/135 (78.52%), Postives = 112/135 (82.96%), Query Frame = 0 

Query: 1   MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQK 60
           MF L+FHYED+SRQDPLL      + +  GSCEIRVVP  PY+FIIKNGKLAMEI RGQK
Sbjct: 1   MFPLNFHYEDVSRQDPLLNRITPTLWKFLGSCEIRVVPNGPYNFIIKNGKLAMEIPRGQK 60

Query: 61  FIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMLNFSVRISTVMSLLDSPV 120
           FIQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGHGM NFSVRISTVMSLLD PV
Sbjct: 61  FIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDFPV 120

Query: 121 EIRDNSINSRWKQSF 136
           EIR NSI    +  F
Sbjct: 121 EIRKNSIQFSMETEF 135

[Close]
BLAST of CcUC04G076870 vs. ExPASy Swiss-Prot
Match: P51409 (60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum OX=4113 GN=RPL5 PE=2 SV=2)

HSP 1 Score: 174.9 bits (442), Expect = 7.1e-43
Identity = 101/137 (73.72%), Postives = 108/137 (78.83%), Query Frame = 0 

Query: 1   MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPK-APYDFIIKNGKLAMEILRGQ 60
           MF L FHYED+ RQD LLKLN+ANVMEVPG C+I VVPK AP    IKNGKLAMEI  GQ
Sbjct: 5   MFPLYFHYEDVLRQDLLLKLNYANVMEVPGLCKIIVVPKTAP---SIKNGKLAMEISCGQ 64

Query: 61  KFIQTQRGSTGKSFRSNPFLESNKD-KGYVSDLARQSTLRGHGMLNFSVRISTVMSLLDS 120
           K    QR STGKSFRSNPFL SNKD KGYVSDLARQSTLRGHGM +F VRISTVMSLLDS
Sbjct: 65  KL--KQRASTGKSFRSNPFLGSNKDKKGYVSDLARQSTLRGHGMSHFLVRISTVMSLLDS 124

Query: 121 PVEIRDNSINSRWKQSF 136
           P+EIR+ SI    +  F
Sbjct: 125 PLEIRERSIQFSMETEF 136

[Close]
BLAST of CcUC04G076870 vs. ExPASy Swiss-Prot
Match: P26860 (60S ribosomal protein L5, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL5 PE=3 SV=2)

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-31
Identity = 78/128 (60.94%), Postives = 96/128 (75.00%), Query Frame = 0 

Query: 4   LDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQ 63
           L+FHY  + R D LLK+N+ N+MEVP  C+I VVPKAP +F IKN KLAMEI+ GQKFIQ
Sbjct: 9   LEFHYNQVIRPDLLLKINYENIMEVPRLCKIIVVPKAPSNF-IKNVKLAMEIVCGQKFIQ 68

Query: 64  TQ-RGSTGKSFRSNPFL---ESNKDKGYVSDLARQSTLRGHGMLNFSVRISTVMSLLDSP 123
           T+ RGSTGKSFR N F+   ES +D GYV+ LAR STLRGH M NF  ++ T++S  D P
Sbjct: 69  TRSRGSTGKSFRFNKFVLNQESKRDTGYVTYLAR-STLRGHIMYNFLEKLVTIISFYDYP 128

Query: 124 VEIRDNSI 128
           V+I+ NSI
Sbjct: 129 VKIQKNSI 134

[Close]
BLAST of CcUC04G076870 vs. ExPASy TrEMBL
Match: A0A7D5Y005 (Ribosomal protein L5 OS=Luffa acutangula OX=56866 GN=rpl5 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.4e-62
Identity = 124/135 (91.85%), Postives = 127/135 (94.07%), Query Frame = 0 

Query: 1   MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQK 60
           MFSLDFHYED+SRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEI RGQK
Sbjct: 1   MFSLDFHYEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK 60

Query: 61  FIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMLNFSVRISTVMSLLDSPV 120
           FIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGM NFSVRISTVMSLLDSPV
Sbjct: 61  FIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPV 120

Query: 121 EIRDNSINSRWKQSF 136
           EIR+NSI    +  F
Sbjct: 121 EIRENSIQFSMETEF 135

[Close]
BLAST of CcUC04G076870 vs. ExPASy TrEMBL
Match: A0A288W7C7 (Orf229 OS=Bupleurum falcatum OX=46367 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.3e-60
Identity = 121/135 (89.63%), Postives = 125/135 (92.59%), Query Frame = 0 

Query: 1   MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQK 60
           MF L+FHYED+SRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEI RGQK
Sbjct: 66  MFPLNFHYEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK 125

Query: 61  FIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMLNFSVRISTVMSLLDSPV 120
           FIQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGHGM NFSVRISTVMSLLDSPV
Sbjct: 126 FIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPV 185

Query: 121 EIRDNSINSRWKQSF 136
           EIR+NSI    +  F
Sbjct: 186 EIRENSIQFSMETEF 200

[Close]
BLAST of CcUC04G076870 vs. ExPASy TrEMBL
Match: A0A288W768 (Ribosomal protein L5 OS=Bupleurum falcatum OX=46367 GN=rpl5 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.3e-60
Identity = 121/135 (89.63%), Postives = 125/135 (92.59%), Query Frame = 0 

Query: 1   MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQK 60
           MF L+FHYED+SRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEI RGQK
Sbjct: 1   MFPLNFHYEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK 60

Query: 61  FIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMLNFSVRISTVMSLLDSPV 120
           FIQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGHGM NFSVRISTVMSLLDSPV
Sbjct: 61  FIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPV 120

Query: 121 EIRDNSINSRWKQSF 136
           EIR+NSI    +  F
Sbjct: 121 EIRENSIQFSMETEF 135

[Close]
BLAST of CcUC04G076870 vs. ExPASy TrEMBL
Match: A0A386JNB1 (Ribosomal protein L5 OS=Glycine soja OX=3848 GN=rpl5 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.3e-60
Identity = 121/135 (89.63%), Postives = 124/135 (91.85%), Query Frame = 0 

Query: 1   MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQK 60
           MF L FHYED+SRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEI RGQK
Sbjct: 1   MFPLHFHYEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK 60

Query: 61  FIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMLNFSVRISTVMSLLDSPV 120
           FIQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGHGM NFSVRISTVMSLLDSPV
Sbjct: 61  FIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPV 120

Query: 121 EIRDNSINSRWKQSF 136
           EIR+NSI    +  F
Sbjct: 121 EIRENSIQFSMETEF 135

[Close]
BLAST of CcUC04G076870 vs. ExPASy TrEMBL
Match: K7M8M6 (Ribosomal protein subunit L5 OS=Glycine max OX=3847 GN=rp15 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.3e-60
Identity = 121/135 (89.63%), Postives = 124/135 (91.85%), Query Frame = 0 

Query: 1   MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQK 60
           MF L FHYED+SRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEI RGQK
Sbjct: 1   MFPLHFHYEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK 60

Query: 61  FIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMLNFSVRISTVMSLLDSPV 120
           FIQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGHGM NFSVRISTVMSLLDSPV
Sbjct: 61  FIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPV 120

Query: 121 EIRDNSINSRWKQSF 136
           EIR+NSI    +  F
Sbjct: 121 EIRENSIQFSMETEF 135

[Close]
BLAST of CcUC04G076870 vs. TAIR 10
Match: AT2G07725.1 (Ribosomal L5P family protein )

HSP 1 Score: 234.2 bits (596), Expect = 7.0e-62
Identity = 118/135 (87.41%), Postives = 122/135 (90.37%), Query Frame = 0 

Query: 1   MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQK 60
           MF L+FHYED+SRQDPLLK NHANVMEVPGSCEIRVVPKAPY+FIIKNGKLAMEI RGQK
Sbjct: 1   MFPLNFHYEDVSRQDPLLKPNHANVMEVPGSCEIRVVPKAPYNFIIKNGKLAMEIPRGQK 60

Query: 61  FIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMLNFSVRISTVMSLLDSPV 120
           FIQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGHGM NFSVRISTVMSLLD PV
Sbjct: 61  FIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDFPV 120

Query: 121 EIRDNSINSRWKQSF 136
           EIR NSI    +  F
Sbjct: 121 EIRKNSIQFSMETEF 135

[Close]
BLAST of CcUC04G076870 vs. TAIR 10
Match: ATMG00210.1 (ribosomal protein L5 )

HSP 1 Score: 234.2 bits (596), Expect = 7.0e-62
Identity = 118/135 (87.41%), Postives = 122/135 (90.37%), Query Frame = 0 

Query: 1   MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQK 60
           MF L+FHYED+SRQDPLLK NHANVMEVPGSCEIRVVPKAPY+FIIKNGKLAMEI RGQK
Sbjct: 1   MFPLNFHYEDVSRQDPLLKPNHANVMEVPGSCEIRVVPKAPYNFIIKNGKLAMEIPRGQK 60

Query: 61  FIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMLNFSVRISTVMSLLDSPV 120
           FIQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGHGM NFSVRISTVMSLLD PV
Sbjct: 61  FIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDFPV 120

Query: 121 EIRDNSINSRWKQSF 136
           EIR NSI    +  F
Sbjct: 121 EIRKNSIQFSMETEF 135

The following BLAST results are available for this feature:
BLAST of CcUC04G076870 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009913650.12.9e-6291.85ribosomal protein L5 [Luffa acutangula] >QLJ93020.1 ribosomal protein L5 [Luffa ... [more]
YP_009430373.12.8e-6089.63ribosomal protein L5 [Bupleurum falcatum] >YP_010035061.1 ribosomal protein L7 [... [more]
YP_009430372.12.8e-6089.63orf229 [Bupleurum falcatum] >ARR27505.1 orf229 [Bupleurum falcatum][more]
YP_007516856.14.7e-6089.63ribosomal protein subunit L5 [Glycine max] >YP_009532801.1 ribosomal protein L5 ... [more]
XP_020240384.14.7e-6089.63uncharacterized protein LOC109819169 [Cajanus cajan][more]
BLAST of CcUC04G076870 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P427935.6e-5682.9660S ribosomal protein L5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL5 ... [more]
Q054921.4e-5481.0260S ribosomal protein L5, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPL5 ... [more]
P493881.7e-5278.5260S ribosomal protein L5, mitochondrial OS=Brassica napus OX=3708 GN=RPL5 PE=3 S... [more]
P514097.1e-4373.7260S ribosomal protein L5, mitochondrial OS=Solanum tuberosum OX=4113 GN=RPL5 PE=... [more]
P268601.6e-3160.9460S ribosomal protein L5, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL5... [more]
BLAST of CcUC04G076870 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7D5Y0051.4e-6291.85Ribosomal protein L5 OS=Luffa acutangula OX=56866 GN=rpl5 PE=3 SV=1[more]
A0A288W7C71.3e-6089.63Orf229 OS=Bupleurum falcatum OX=46367 PE=3 SV=1[more]
A0A288W7681.3e-6089.63Ribosomal protein L5 OS=Bupleurum falcatum OX=46367 GN=rpl5 PE=3 SV=1[more]
A0A386JNB12.3e-6089.63Ribosomal protein L5 OS=Glycine soja OX=3848 GN=rpl5 PE=3 SV=1[more]
K7M8M62.3e-6089.63Ribosomal protein subunit L5 OS=Glycine max OX=3847 GN=rp15 PE=3 SV=1[more]
BLAST of CcUC04G076870 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G07725.17.0e-6287.41Ribosomal L5P family protein [more]
ATMG00210.17.0e-6287.41ribosomal protein L5 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002132Ribosomal protein L5PIRSFPIRSF002161RPL5p_RPL5a_RPL11e_RPL5ocoord: 1..135
e-value: 5.1E-16
score: 56.5
IPR002132Ribosomal protein L5PANTHERPTHR1199460S RIBOSOMAL PROTEIN L11-RELATEDcoord: 1..135
IPR022803Ribosomal protein L5 domain superfamilyGENE3D3.30.1440.10coord: 3..143
e-value: 4.6E-12
score: 47.9
IPR022803Ribosomal protein L5 domain superfamilySUPERFAMILY55282RL5-likecoord: 1..131
NoneNo IPR availablePANTHERPTHR11994:SF1160S RIBOSOMAL PROTEIN L5, MITOCHONDRIALcoord: 1..135

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC04G076870.1CcUC04G076870.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome