CcUC04G076310 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC04G076310
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr04: 31551707 .. 31552189 (+)
RNA-Seq Expression	CcUC04G076310
Synteny	CcUC04G076310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCCACACGATCCACCGCCCTTCAAAACATCTTGGCAACGAAGACAAGTAGTTGTTACAAGAAAATCGAAATCAATCCGAATCCCATACTCCGCAACTTGATCATTATTATCCCCATCTCCAACGCTCCTCCAATACACGCTAGTATAGCTAGCGCAGTATTTGAGCATCAGCTTCAAAGAATCCATGGCCTTCGGATGATACGAGCAGCAAGAACTTGCCCCCAGCGCCGTCGCACACTCCGGCACGTGCGTGCACAAGTAACTCGCACTGTCACACGACGCGTCGCACCGGTCCGGGAACCGCCCGCAGAACACCGGCTTGGGCGCGATCATTACGTGGTCCTCGCTGCAGTTGAAGAAGAGGTAGTCGTTAAGAGGGGAAACAGAGAGGTGGGTTTCCGGGTCGAGTATGAAGGGTCGGGTGGGGCGGAAATTTTGACCGTCTTGGCAGGCCCACATGTCCGGGTCGGAGATTAG

mRNA sequence

ATGAAATCCACACGATCCACCGCCCTTCAAAACATCTTGGCAACGAAGACAAGTAGTTGTTACAAGAAAATCGAAATCAATCCGAATCCCATACTCCGCAACTTGATCATTATTATCCCCATCTCCAACGCTCCTCCAATACACGCTAGTATAGCTAGCGCAGTATTTGAGCATCAGCTTCAAAGAATCCATGGCCTTCGGATGATACGAGCAGCAAGAACTTGCCCCCAGCGCCGTCGCACACTCCGGCACGTGCGTGCACAAGTAACTCGCACTGTCACACGACGCGTCGCACCGGTCCGGGAACCGCCCGCAGAACACCGGCTTGGGCGCGATCATTACGTGGTCCTCGCTGCAGTTGAAGAAGAGGTAGTCGTTAAGAGGGGAAACAGAGAGGTGGGTTTCCGGGTCGAGTATGAAGGGTCGGGTGGGGCGGAAATTTTGACCGTCTTGGCAGGCCCACATGTCCGGGTCGGAGATTAG

Coding sequence (CDS)

ATGAAATCCACACGATCCACCGCCCTTCAAAACATCTTGGCAACGAAGACAAGTAGTTGTTACAAGAAAATCGAAATCAATCCGAATCCCATACTCCGCAACTTGATCATTATTATCCCCATCTCCAACGCTCCTCCAATACACGCTAGTATAGCTAGCGCAGTATTTGAGCATCAGCTTCAAAGAATCCATGGCCTTCGGATGATACGAGCAGCAAGAACTTGCCCCCAGCGCCGTCGCACACTCCGGCACGTGCGTGCACAAGTAACTCGCACTGTCACACGACGCGTCGCACCGGTCCGGGAACCGCCCGCAGAACACCGGCTTGGGCGCGATCATTACGTGGTCCTCGCTGCAGTTGAAGAAGAGGTAGTCGTTAAGAGGGGAAACAGAGAGGTGGGTTTCCGGGTCGAGTATGAAGGGTCGGGTGGGGCGGAAATTTTGACCGTCTTGGCAGGCCCACATGTCCGGGTCGGAGATTAG

Protein sequence

MKSTRSTALQNILATKTSSCYKKIEINPNPILRNLIIIIPISNAPPIHASIASAVFEHQLQRIHGLRMIRAARTCPQRRRTLRHVRAQVTRTVTRRVAPVREPPAEHRLGRDHYVVLAAVEEEVVVKRGNREVGFRVEYEGSGGAEILTVLAGPHVRVGD

Homology

[Close]

BLAST of CcUC04G076310 vs. NCBI nr
Match: PON91268.1 (hypothetical protein TorRG33x02_128310, partial [Trema orientale])

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-26
Identity = 77/166 (46.39%), Postives = 107/166 (64.46%), Query Frame = 0


Query: 1   MKSTRSTALQNILATKTSSCYKKIEINPNPILRNLIIIIPISNAPPIHASIASAVFEHQL 60
           +K T   +L +ILA KT+  ++ +++N +PI R+LII +  ++ PPIHA +   + +HQ 
Sbjct: 71  IKPTSPASLTHILAPKTTRSHRNLKVNSDPIFRDLIIRLSCASVPPIHAGVTRTILQHQP 130

Query: 61  QRIHGLRMIRAARTCP------QRRRTLRHVRAQVTRTVTRRVAPVREPPAEHRLGRDHY 120
           QR+   R+IR AR+        +RR TL  V A+V RTV RRVA +R+P AEH L  D +
Sbjct: 131 QRLGRFRVIRTARSSTTAHSAIRRRATLGQVAAKVARTVARRVASLRKPLAEHGLRLDDH 190

Query: 121 VVLAAVEEEVVVKRGNREVGFRVEYEGSGGAEILTVLAGPHVRVGD 161
           V  AAVEE+VVV RG  EV   VE + SGG E++ VLA PH RVG+
Sbjct: 191 VGFAAVEEQVVVLRGEGEVSTCVEAKRSGGTEVVAVLAVPHERVGE 236

[Close]

BLAST of CcUC04G076310 vs. NCBI nr
Match: PON52123.1 (hypothetical protein PanWU01x14_211130, partial [Parasponia andersonii])

HSP 1 Score: 126.7 bits (317), Expect = 1.8e-25
Identity = 78/166 (46.99%), Postives = 107/166 (64.46%), Query Frame = 0


Query: 1   MKSTRSTALQNILATKTSSCYKKIEINPNPILRNLIIIIPISNAPPIHASIASAVFEHQL 60
           +K T   +L +ILA KT+  +  +++N +PI R+LII +  ++ PPIHA +   + +HQ 
Sbjct: 71  IKPTSPASLIHILALKTTRSHWNLKVNSDPIFRDLIIRLSCTSVPPIHAGVTRTILQHQP 130

Query: 61  QRIHGLRMIRAAR------TCPQRRRTLRHVRAQVTRTVTRRVAPVREPPAEHRLGRDHY 120
           QR+   R+IR AR      +  +RR TL  V A+V RTV RRVA +R+P AEH L  D +
Sbjct: 131 QRLGRFRVIRTARSNTITHSTIRRRATLGQVEAKVARTVARRVASLRKPFAEHGLRLDDH 190

Query: 121 VVLAAVEEEVVVKRGNREVGFRVEYEGSGGAEILTVLAGPHVRVGD 161
           V  AAV+E+VVV RG  EVG  VE +GSGGA +  VLA PH RVG+
Sbjct: 191 VGFAAVKEQVVVLRGEGEVGTCVEAKGSGGAVVDAVLAVPHERVGE 236

[Close]

BLAST of CcUC04G076310 vs. NCBI nr
Match: RDX70635.1 (hypothetical protein CR513_50104, partial [Mucuna pruriens])

HSP 1 Score: 111.3 bits (277), Expect = 7.7e-21
Identity = 72/160 (45.00%), Postives = 97/160 (60.62%), Query Frame = 0


Query: 1   MKSTRSTALQNILATKTSSCYKKIEINPNPILRNLIIIIPISNAPPIHASIASAVFEHQL 60
           +KST ST+ Q ILA K +   + I+IN +PI R+LII    +N  PI+ASI S + EHQ 
Sbjct: 10  IKSTSSTSFQGILALKAAGGDRNIKINSDPIFRDLIIRHRSANVLPINASITSTILEHQP 69

Query: 61  QRIHGLRMIRAARTCPQRRRTLRHVRAQVTRTVTRRVAPVREPPAEHRLGRDHYVVLAAV 120
           QR+ G  ++RAA T  +R+   R V A++  TV   +  + +  AEH LG +  VV AAV
Sbjct: 70  QRLSGFGIVRAASTARERKGAPRQVPAEIASTVAGGITVLGKVLAEHGLGLNDDVVFAAV 129

Query: 121 EEEVVVKRGNREVGFRVEYEGSGGAEILTVLAGPHVRVGD 161
           EE V V R   EVG  V+ EG   A++L+VLA PH  V D
Sbjct: 130 EEHVFVLRRELEVGAGVQAEGPRAAKLLSVLAAPHEGVRD 169

[Close]

BLAST of CcUC04G076310 vs. NCBI nr
Match: KAG7026644.1 (hypothetical protein SDJN02_10647, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.5 bits (236), Expect = 4.4e-16
Identity = 59/88 (67.05%), Postives = 65/88 (73.86%), Query Frame = 0


Query: 1   MKSTRSTALQNILATKTSSCYKKIEINPNPILRNLII-IIPISNAPPIHASIASAVFEHQ 60
           +KST   ALQNILAT+T S    I+IN NPI  +LII +I  SNAPPIH  +ASAV EHQ
Sbjct: 97  VKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHSSNAPPIHTRVASAVLEHQ 156

Query: 61  LQRIHGLRMIRAARTCPQRRRTLRHVRA 88
           LQRIHGL MIRAA T  QRR TL HVRA
Sbjct: 157 LQRIHGLGMIRAAGTSFQRRCTLWHVRA 184

[Close]

BLAST of CcUC04G076310 vs. ExPASy TrEMBL
Match: A0A2P5F0F7 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_128310 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.3e-26
Identity = 77/166 (46.39%), Postives = 107/166 (64.46%), Query Frame = 0


Query: 1   MKSTRSTALQNILATKTSSCYKKIEINPNPILRNLIIIIPISNAPPIHASIASAVFEHQL 60
           +K T   +L +ILA KT+  ++ +++N +PI R+LII +  ++ PPIHA +   + +HQ 
Sbjct: 71  IKPTSPASLTHILAPKTTRSHRNLKVNSDPIFRDLIIRLSCASVPPIHAGVTRTILQHQP 130

Query: 61  QRIHGLRMIRAARTCP------QRRRTLRHVRAQVTRTVTRRVAPVREPPAEHRLGRDHY 120
           QR+   R+IR AR+        +RR TL  V A+V RTV RRVA +R+P AEH L  D +
Sbjct: 131 QRLGRFRVIRTARSSTTAHSAIRRRATLGQVAAKVARTVARRVASLRKPLAEHGLRLDDH 190

Query: 121 VVLAAVEEEVVVKRGNREVGFRVEYEGSGGAEILTVLAGPHVRVGD 161
           V  AAVEE+VVV RG  EV   VE + SGG E++ VLA PH RVG+
Sbjct: 191 VGFAAVEEQVVVLRGEGEVSTCVEAKRSGGTEVVAVLAVPHERVGE 236

[Close]

BLAST of CcUC04G076310 vs. ExPASy TrEMBL
Match: A0A2P5BTK1 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_211130 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 8.6e-26
Identity = 78/166 (46.99%), Postives = 107/166 (64.46%), Query Frame = 0


Query: 1   MKSTRSTALQNILATKTSSCYKKIEINPNPILRNLIIIIPISNAPPIHASIASAVFEHQL 60
           +K T   +L +ILA KT+  +  +++N +PI R+LII +  ++ PPIHA +   + +HQ 
Sbjct: 71  IKPTSPASLIHILALKTTRSHWNLKVNSDPIFRDLIIRLSCTSVPPIHAGVTRTILQHQP 130

Query: 61  QRIHGLRMIRAAR------TCPQRRRTLRHVRAQVTRTVTRRVAPVREPPAEHRLGRDHY 120
           QR+   R+IR AR      +  +RR TL  V A+V RTV RRVA +R+P AEH L  D +
Sbjct: 131 QRLGRFRVIRTARSNTITHSTIRRRATLGQVEAKVARTVARRVASLRKPFAEHGLRLDDH 190

Query: 121 VVLAAVEEEVVVKRGNREVGFRVEYEGSGGAEILTVLAGPHVRVGD 161
           V  AAV+E+VVV RG  EVG  VE +GSGGA +  VLA PH RVG+
Sbjct: 191 VGFAAVKEQVVVLRGEGEVGTCVEAKGSGGAVVDAVLAVPHERVGE 236

[Close]

BLAST of CcUC04G076310 vs. ExPASy TrEMBL
Match: A0A371EX53 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_50104 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.7e-21
Identity = 72/160 (45.00%), Postives = 97/160 (60.62%), Query Frame = 0


Query: 1   MKSTRSTALQNILATKTSSCYKKIEINPNPILRNLIIIIPISNAPPIHASIASAVFEHQL 60
           +KST ST+ Q ILA K +   + I+IN +PI R+LII    +N  PI+ASI S + EHQ 
Sbjct: 10  IKSTSSTSFQGILALKAAGGDRNIKINSDPIFRDLIIRHRSANVLPINASITSTILEHQP 69

Query: 61  QRIHGLRMIRAARTCPQRRRTLRHVRAQVTRTVTRRVAPVREPPAEHRLGRDHYVVLAAV 120
           QR+ G  ++RAA T  +R+   R V A++  TV   +  + +  AEH LG +  VV AAV
Sbjct: 70  QRLSGFGIVRAASTARERKGAPRQVPAEIASTVAGGITVLGKVLAEHGLGLNDDVVFAAV 129

Query: 121 EEEVVVKRGNREVGFRVEYEGSGGAEILTVLAGPHVRVGD 161
           EE V V R   EVG  V+ EG   A++L+VLA PH  V D
Sbjct: 130 EEHVFVLRRELEVGAGVQAEGPRAAKLLSVLAAPHEGVRD 169

The following BLAST results are available for this feature:

BLAST of CcUC04G076310 vs. NCBI nr


Match Name	E-value	Identity	Description
PON91268.1	2.7e-26	46.39	hypothetical protein TorRG33x02_128310, partial [Trema orientale]	[more]
PON52123.1	1.8e-25	46.99	hypothetical protein PanWU01x14_211130, partial [Parasponia andersonii]	[more]
RDX70635.1	7.7e-21	45.00	hypothetical protein CR513_50104, partial [Mucuna pruriens]	[more]
KAG7026644.1	4.4e-16	67.05	hypothetical protein SDJN02_10647, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CcUC04G076310 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC04G076310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5F0F7	1.3e-26	46.39	Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_128...	[more]
A0A2P5BTK1	8.6e-26	46.99	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A371EX53	3.7e-21	45.00	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_50104 P...	[more]

BLAST of CcUC04G076310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC04G076310.1	CcUC04G076310.1	mRNA