CcUC04G067670 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC04G067670
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr04: 24388420 .. 24390972 (-)
RNA-Seq ExpressionCcUC04G067670
SyntenyCcUC04G067670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAGAGAAATAAAAGAAAAGGAATGGGGAAAGGACCTGCATTCCGGAATCCGGCAAGTAGTGATCGCTGTGACCCAACAGCATAACTTCATCGTGATGTGAGAAATAATTGTTTGAAATCGTGATTCCGGTGGAGCCCATCACCGCATCGATCAGCCCATCTTTGCAATGCGACAATGAACAATGATCAATCCATATATCCTTCGATCCGAAGATCGATATCCCGTCGCCGTCCGATTTCGTCCGGTACCCGTAATGCGTCGGACTTGATCGGACCATGGTATTACCTGCACAGTCATACCTTCAGATATATGCATTTTGTCGAACATTTGGTGTGCAGGAAGGTAAATCAGGGTTTTAGATTTCTTTACCTGATGGATAACAATGGTGGATATGGATGTTGTGGATGATGACATTGCTTATGTACTGCAATGTAATGCAGCCACCGCCGACTATATGGACATTGGCGCCGCGGCCGTCTAGGGTTTTGTAGCTGTTGAAGATGAGTTCCTGTTTGAGTTTGATGAGCATGTTGGCGGGGAAGACGATCCAGAGAGGTTGCGGCTGTATCACGGCGTATCGTAATGTTCCGGGCTTTGGATTTACCGCATCGTCGTCCGAATCGTCTGTGACTATGTAGAACTCGCCATTTTTGCCGCCGAGAGCGTACTGGCCGAATCCTATGGCGCAATCGGCGAGGCGCTGGCGGTTGTTTGGCCAATTTGGATCGCATTTCCAGCAGTCGTCGATGGGGTTCCCGGTGTAGCAAGAAGAAGAATCATCCTTCTCTGAGATTTGGAGCAATTGCCTTCTCGTTAAGGAAGCATTTACTTTCCTGCAACAGGTAACGATTTTCTTCCATAACTTTAGTGATTAGAGGAACTTAGCGTTAATCATTGATGGTATAATCTAAATTTAAGCTCCATAAATGGTTGAATCAAACGAGATATACTTCAGATTTGGTAAATGATCTGAAAGAAGGGTAAGCGAGAAAATTTGGTCATTTTCAGTGCTTTCCACCCAAAGGAAAAAAGAAACAGACAAAAAACAAAAAGACCGAGTAACCAATAAATGTAGAGAAAGAGAACGATTATGCAGTGTTTTTCTTTTAAAAATGCTTAAATCTGACAAAGAACTATGCATGAAGATTAAGATAGGAAATGAAATTTGAAATGGAAAACTGAGGGTGGTGACGGGATTATCAAAATGCAAAAATCCCTAAACAGAAGAGCATAAGCCGTTCAAACAGTAGATTTGAATGGCATTTTCTTTTTCTTATGATTACCAAATCTGTAAAAGAAGTTGGTAAAGATTTAAAAAATGATTAGATTTATGAAGAAATCCAACAATGTAGTTAAAAGTTCATAGAACAGGTCAGAGGCATAATAGTTACTAAACAGAACAAGAGTGGAAGAGTAAGATTTAAGCATAAGTTTTAGACTTTAAGGCCTAATAATGTGGTCAAGAAAAACTTAAAACTGAAGACTGTAGCTACCCAAAGAACTCAAAAAACAAGGTCAAGAAACAAAGAGCGACCAATAACATAGTAACAAAACACCCTGGTTTTAAACTTGGATTTTGTACATCTAATACATGAAATCCTACAAGATTAAGCATAAAAATCTTGGAACAGGACAGTAAAGTAGAGAAAATCGACAATGTAGTTAAAAGTTTCGAAATGCAGACAGTTAGAGTAAGAGCCAAGCCAAGAACATAGTGATTCTTAAACAACATTTGTGGAAAAATGGAAAATTGATGCACCTGTGAACTTCTTGAGCAACCAGTTCAGGGCTAGGATGCTGGCCGGGGAGAGTGAGGTTGAGAGCGGCGGCGGGGGTACCAGCACCGGCACGGAGCGGCAAGCTGGAGGGTAGCAGCAAAGCTAGCAGCACAATGCAGGTTGTGGCCAGCATTTTGGAGAGCAAAGATGGTAAGCTCTCTCTCTCACTCTCTCACTCACTCTCTCTGCAGGCTTATTGCAAATTGCTCTGCAGTTTGTGTTTGTTTGTTGTTTGAGTGGAGAACTGTTTTTCAACTGTTTTTCTTCATTTTCTTCCTTCCATGTTACCCTCAAAAGCATTCTCAGCTCTCATTCTGTCTAATATAATCATTGTCAGAGACTTTTGGGATTCGGTTAGTGAGAGAAAGAGAGAGGGGAGAGAGAATCTTTGGTTCTCGAGGAGGAAAGTTGTATCCAATTTACTTTTGAAGGAAATGGGTTAATTTCTTTCATTTGGATTTTCTTTTAGTTCCCCAACGTGGGGCCTGGAGGTTCGAACCTTACCCTTTTGATCGAGTAAAGATATCTTAACTTGTTGAGTTATGCTAAGTTAGAATCTCTAATTAAGTTTGAATGTTTGATAACAAAATATGATGGTACAAATACAGAATTTATCTGCAGAATGAACGTAGAATAGTTAACATTTTAAAAACTCATAACCCAAATTCAAATTATTTAAATTAAAATTAAAACAGATTTGTAGGCTGAAAAGTAATTGGAGGGGGAAGGGTGGGAGTGTGGTGAGGTGGCAGAAGATGATTGGGCCGTATAAA

mRNA sequence

AGGAGAGAAATAAAAGAAAAGGAATGGGGAAAGGACCTGCATTCCGGAATCCGGCAAGTAGTGATCGCTGTGACCCAACAGCATAACTTCATCGTGATCCCATCACCGCATCGATCAGCCCATCTTTGCAATGCGACAATGAACAATGATCAATCCATATATCCTTCGATCCGAAGATCGATATCCCGTCGCCGTCCGATTTCGTCCGGTACCCGTAATGCGTCGGACTTGATCGGACCATGGTATTACCTGCACAGTCATACCTTCAGATATATGCATTTTGTCGAACATTTGGTGTGCAGGAAGCCACCGCCGACTATATGGACATTGGCGCCGCGGCCGTCTAGGATGAGTTCCTGTTTGAGTTTGATGAGCATGTTGGCGGGGAAGACGATCCAGAGAGGTTGCGGCTGTATCACGGCGTATCGTAATGTTCCGGGCTTTGGATTTACCGCATCGTCGTCCGAATCGTCTGTGACTATAACTCGCCATTTTTGCCGCCGAGAGCGTACTGGCCGAATCCTATGGCGCAATCGGCGAGGCGCTGGCGGTTGTTTGGCCAATTTGGATCGCATTTCCAGCAGTCGTCGATGGGGTTCCCGGTGTAGCAAGAAGAAGAATCATCCTTCTCTGAGATTTGGAGCAATTGCCTTCTCGTTAAGGAAGCATTTACTTTCCTGCAACAGTTCAGGGCTAGGATGCTGGCCGGGGAGAGTGAGGTTGAGAGCGGCGGCGGGGGTACCAGCACCGGCACGGAGCGGCAAGCTGGAGGGTAGCAGCAAAGCTAGCAGCACAATGCAGGTTGTGGCCAGCATTTTGGAGAGCAAAGATGTGGAGAACTGTTTTTCAACTGTTTTTCTTCATTTTCTTCCTTCCATGTTACCCTCAAAAGCATTCTCAGCTCTCATTCTGTCTAATATAATCATTGTCAGAGACTTTTGGGATTCGGTTAGTGAGAGAAAGAGAGAGGGGAGAGAGAATCTTTGGTTCTCGAGGAGGAAAATTTGTAGGCTGAAAAGTAATTGGAGGGGGAAGGGTGGGAGTGTGGTGAGGTGGCAGAAGATGATTGGGCCGTATAAA

Coding sequence (CDS)

AGGAGAGAAATAAAAGAAAAGGAATGGGGAAAGGACCTGCATTCCGGAATCCGGCAAGTAGTGATCGCTGTGACCCAACAGCATAACTTCATCGTGATCCCATCACCGCATCGATCAGCCCATCTTTGCAATGCGACAATGAACAATGATCAATCCATATATCCTTCGATCCGAAGATCGATATCCCGTCGCCGTCCGATTTCGTCCGGTACCCGTAATGCGTCGGACTTGATCGGACCATGGTATTACCTGCACAGTCATACCTTCAGATATATGCATTTTGTCGAACATTTGGTGTGCAGGAAGCCACCGCCGACTATATGGACATTGGCGCCGCGGCCGTCTAGGATGAGTTCCTGTTTGAGTTTGATGAGCATGTTGGCGGGGAAGACGATCCAGAGAGGTTGCGGCTGTATCACGGCGTATCGTAATGTTCCGGGCTTTGGATTTACCGCATCGTCGTCCGAATCGTCTGTGACTATAACTCGCCATTTTTGCCGCCGAGAGCGTACTGGCCGAATCCTATGGCGCAATCGGCGAGGCGCTGGCGGTTGTTTGGCCAATTTGGATCGCATTTCCAGCAGTCGTCGATGGGGTTCCCGGTGTAGCAAGAAGAAGAATCATCCTTCTCTGAGATTTGGAGCAATTGCCTTCTCGTTAAGGAAGCATTTACTTTCCTGCAACAGTTCAGGGCTAGGATGCTGGCCGGGGAGAGTGAGGTTGAGAGCGGCGGCGGGGGTACCAGCACCGGCACGGAGCGGCAAGCTGGAGGGTAGCAGCAAAGCTAGCAGCACAATGCAGGTTGTGGCCAGCATTTTGGAGAGCAAAGATGTGGAGAACTGTTTTTCAACTGTTTTTCTTCATTTTCTTCCTTCCATGTTACCCTCAAAAGCATTCTCAGCTCTCATTCTGTCTAATATAATCATTGTCAGAGACTTTTGGGATTCGGTTAGTGAGAGAAAGAGAGAGGGGAGAGAGAATCTTTGGTTCTCGAGGAGGAAAATTTGTAGGCTGAAAAGTAATTGGAGGGGGAAGGGTGGGAGTGTGGTGAGGTGGCAGAAGATGATTGGGCCGTATAAA

Protein sequence

RREIKEKEWGKDLHSGIRQVVIAVTQQHNFIVIPSPHRSAHLCNATMNNDQSIYPSIRRSISRRRPISSGTRNASDLIGPWYYLHSHTFRYMHFVEHLVCRKPPPTIWTLAPRPSRMSSCLSLMSMLAGKTIQRGCGCITAYRNVPGFGFTASSSESSVTITRHFCRRERTGRILWRNRRGAGGCLANLDRISSSRRWGSRCSKKKNHPSLRFGAIAFSLRKHLLSCNSSGLGCWPGRVRLRAAAGVPAPARSGKLEGSSKASSTMQVVASILESKDVENCFSTVFLHFLPSMLPSKAFSALILSNIIIVRDFWDSVSERKREGRENLWFSRRKICRLKSNWRGKGGSVVRWQKMIGPYK
Homology
[Close]
BLAST of CcUC04G067670 vs. NCBI nr
Match: CAA2623019.1 (unnamed protein product [Spirodela intermedia] >CAA7398992.1 unnamed protein product [Spirodela intermedia])

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-04
Identity = 33/72 (45.83%), Postives = 42/72 (58.33%), Query Frame = 0 

Query: 95  VEHLVCRKPPPTIWTLAPRPS------RMSSCLSLMSMLAGKTIQRGCGCITAYRNVPGF 154
           V + +  +PPP + TLAPRPS       +SSC  ++ ML  KTI RG   +TA+R VPG 
Sbjct: 5   VTNWMVMQPPPVMCTLAPRPSMVLKLFMISSCFRVIFMLLEKTIHRGSSWMTAWRRVPGL 64

Query: 155 GFTASSSESSVT 161
           G     SE SVT
Sbjct: 65  GSAGLPSEESVT 76

[Close]
BLAST of CcUC04G067670 vs. NCBI nr
Match: GAV59802.1 (hypothetical protein CFOL_v3_03333 [Cephalotus follicularis])

HSP 1 Score: 57.4 bits (137), Expect = 3.0e-04
Identity = 32/63 (50.79%), Postives = 36/63 (57.14%), Query Frame = 0 

Query: 104 PPTIWTLAPRPS------RMSSCLSLMSMLAGKTIQRGCGCITAYRNVPGFGFTASSSES 161
           PP +WTLAP PS       MSS  ++M+M   K I  G   IT Y  VPG GFT SSS  
Sbjct: 12  PPAMWTLAPLPSIVLNEFMMSSSFNIMTMSRSKMIHNGSSWITPYLRVPGLGFTGSSSLE 71

[Close]
BLAST of CcUC04G067670 vs. NCBI nr
Match: GFP84376.1 (probable pectate lyase 22 [Phtheirospermum japonicum])

HSP 1 Score: 56.6 bits (135), Expect = 5.1e-04
Identity = 32/63 (50.79%), Postives = 38/63 (60.32%), Query Frame = 0 

Query: 105 PTIWTLAPRPS------RMSSCLSLMSMLAGKTIQRGCGCITAYRNVPGFGFTASSSESS 162
           P +W LAPRPS       MSSCLS ++M   K IQ G G + A+R VPG G T SS   S
Sbjct: 51  PAMWMLAPRPSIVLCELMMSSCLSRITMSDLKIIQSGSGWMAAWRRVPGLGLTGSSWLGS 110

[Close]
BLAST of CcUC04G067670 vs. ExPASy TrEMBL
Match: A0A7I8KND0 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_07008972 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.5e-05
Identity = 33/72 (45.83%), Postives = 42/72 (58.33%), Query Frame = 0 

Query: 95  VEHLVCRKPPPTIWTLAPRPS------RMSSCLSLMSMLAGKTIQRGCGCITAYRNVPGF 154
           V + +  +PPP + TLAPRPS       +SSC  ++ ML  KTI RG   +TA+R VPG 
Sbjct: 5   VTNWMVMQPPPVMCTLAPRPSMVLKLFMISSCFRVIFMLLEKTIHRGSSWMTAWRRVPGL 64

Query: 155 GFTASSSESSVT 161
           G     SE SVT
Sbjct: 65  GSAGLPSEESVT 76

[Close]
BLAST of CcUC04G067670 vs. ExPASy TrEMBL
Match: A0A1Q3AW60 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03333 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-04
Identity = 32/63 (50.79%), Postives = 36/63 (57.14%), Query Frame = 0 

Query: 104 PPTIWTLAPRPS------RMSSCLSLMSMLAGKTIQRGCGCITAYRNVPGFGFTASSSES 161
           PP +WTLAP PS       MSS  ++M+M   K I  G   IT Y  VPG GFT SSS  
Sbjct: 12  PPAMWTLAPLPSIVLNEFMMSSSFNIMTMSRSKMIHNGSSWITPYLRVPGLGFTGSSSLE 71

The following BLAST results are available for this feature:
BLAST of CcUC04G067670 vs. NCBI nr
Match NameE-valueIdentityDescription
CAA2623019.11.3e-0445.83unnamed protein product [Spirodela intermedia] >CAA7398992.1 unnamed protein pro... [more]
GAV59802.13.0e-0450.79hypothetical protein CFOL_v3_03333 [Cephalotus follicularis][more]
GFP84376.15.1e-0450.79probable pectate lyase 22 [Phtheirospermum japonicum][more]
BLAST of CcUC04G067670 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC04G067670 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7I8KND06.5e-0545.83Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_07008972 PE=4 SV... [more]
A0A1Q3AW601.4e-0450.79Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03333 PE=4... [more]
BLAST of CcUC04G067670 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC04G067670.1CcUC04G067670.1mRNA