CcUC04G065900 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC04G065900
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr04: 22932558 .. 22935147 (-)
RNA-Seq ExpressionCcUC04G065900
SyntenyCcUC04G065900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTCATGGAAATGACAAGTTTAGAAATTCTAATTAATATTTGAATTTTACAACTCACACTCAAGCACTATCAAGTACAGTGTGTATATTAGAAAAAAGTACAATGTATTTTATATTCCACTTGATCCATGGATGTTCATCATTGACCAATGACAATATTATAACATATCTTCTACACTTCTAAATGCATTTCTTTGTTATTTTAGAAAAACTTAATTTTCATTATTACGCAGTATTAACTTTTTTCCCTACCAAAATTAAGCGATAAGCGTTGCATGATCTAATTTTATTAATTAATCATTCACTAATTTTAACAAAAAAATAATATCAATAATAAAATAAAGTATTGTATAAAAATTACTTAGACCAATGCATTGAATAATTATTTTAAAATTATAAATCTCAGTAAAAAGTTTAGGTTTGATGTTTTTTCCTCTAAAATTTCATCAATTTGTTTATTGTTGAATTCTTATAAACTTTTTCTAATGATATTTTTTGGAGCAAGGATTTATTAAAGTTCAATTTTAACAATTGTCTAAGTTTTAAGAGAAAGTATGTAAGATTAAAATTAATATAACTTGACAAGTTTATATGTCAAAATTGATTTTTTCCTTTCTTTGGGAAAGTAATGGCTTAAACTTCTATCTGTAAGTGATTGTGGAAGTTTAAAGATAAAGAAACGATCCTAATCCTATAAACGAATTATATTATTGTAATGCTTGTCCGAACTATTAACCAACTATATTATTGATGTTTGCAATTTATCACCCTATTTTTATAATCCTATATAGTGCAATCTCTTTTTTTTTTTTCTCTCTCTCTTTTTTTTTCCATTTTTCCATGATAAAGAAATAAAGAGAATCAAAATTTAAAGCTTGGTAAAATTAACACCAATAATAATACAAAAACACACCAATTATTTACCAATATTCTCCATTTATGCTGGAGAGATCGATTCCTAACATAACTGCCACTACCGAACCAAGGTGATCAGTCGCCACCTCCACCCCCACAACCGCCCCCGCCACCATCACCCCCACATCCATCGTCTCCGCCACCACCACCCCCACATCCACCTCCGCCTCCGCCGCCACCACCCCCACATCCGCCTCCGCCTCCGCCGCCTCCACACCCGCCGCCACCGCCCGCTCCTACACCTTGGAAATTGGCTTCCACATCGAGGCCGGCGGCTTCCCCACGAGCGCTCCCCGAGCAGAGACAATTCAAGATAAGGGTAACAATAAAAATGGAAACAGAAACCACTAGGAATATAATAAATGGCGTAGGAACCATTTTTTGCTATGAACTTCAAGCTTCCATTGCAATATGAATTTTTGAGTTTTTATGATGAAACAATGCGACCCACAGAGAGAGGGATTAATTGTGGAGTTGAAATTTCCAAATGGTTGCATTTATTCACAAGTAAACTTAATTGGTTTTCTAAAAGATATATTCAATATAATTTAATCACAGTCTTACGGAAGTCAATAGTTTTATAATTTCTGAAGTTTCGACCTTCGGTTCTCCAAGTTTTCTCATTAAATTAAAAAAAAAAAAAAAAAAAAAAAAACCTAAGCATATCAAATCATACAGATAAATAATATATGCGAAACAACATGGTATCATAACCCTAAGTTCTAGTGTTTTATATTTTTCAGCCACTGCCTCCCCAGGTATCCAAACTCTACCTCCGTTGATCGGATGTCGACAGAGGCAGATCCACACATATATTTGCCGCCCAGATCTGTCTTTGATCCGCAACCTAGGTTTGTTTCTGCTTCGCTGTACACACAAATCCAAAACTCTCCCGGCTTATGCATAGATTGTCACTAGATTTGGTTCAGTTTAGGTGATTTGGTTCACCTGCTTAATTGATTCTACTGTTTAGTCTTTGTTTTTTCCTTCATGAGTTTCGGTCTTTGTTCCATTTTTAGATCTTTTGGGGTCTCTATCCTGTTCTGTGTTCTGTTTTCAAATCTACGCTCGTAGGTCTTTGTTCGGTTTTCAAATCGGCTTTTCGTGGGTTTTGTTTCACATCTCTATGTAGGTTTCTATTTCTAGCCCAAAAGTTCTTTTTGGTCTTTGTTTCCAGTCAAAAAGTTCTTTATGAATCTTTATTTCCAGTCTAAAAGTTCTCTGTGAGTCTCTGTTTCCAAACTAGAAGTTTTTCGTGGTCTCTGTTTCCAACCCAGATTTGCCATGATTTGATTTAAAAGTTTTCTTCAGTTTCTGTTATTGATCTGCCACCTTGAATTTTATTCAGTCGTTTCAAAACTCAAGTTGGTCGTCACTCTACCACCTTGAGTTTGAGGGAAGGTGTTAAAGTAAATTAGAATTTTATTCCAATCATTAGATTTTCTTATTTTCCTTTCTAATATTTTTCCTTTTTGTTTCCTTTCTTTGTTGGGTGTATTGGTGTCTATTTAGTCTTCCATTCATCTTTATAAAATTAAGCTGATTGTTCAATATATTCTGACTATACCTATTATTCAATAATATTTACAAATTTCACGAAGATATTTTTTACGAATTTGATTTTTAATCTTGTAGATTGTTAATTCCATCTTCAATGTACTAAAATCATGA

mRNA sequence

ATGAAGTTCATGGAAATGACAAGTGATCAGTCGCCACCTCCACCCCCACAACCGCCCCCGCCACCATCACCCCCACATCCATCGTCTCCGCCACCACCACCCCCACATCCACCTCCGCCTCCGCCGCCACCACCCCCACATCCGCCTCCGCCTCCGCCGCCTCCACACCCGCCGCCACCGCCCGCTCCTACACCTTGGAAATTGGCTTCCACATCGAGGCCGGCGGCTTCCCCACGAGCGCTCCCCGAGCAGAGACAATTCAAGATAAGGATTGTTAATTCCATCTTCAATGTACTAAAATCATGA

Coding sequence (CDS)

ATGAAGTTCATGGAAATGACAAGTGATCAGTCGCCACCTCCACCCCCACAACCGCCCCCGCCACCATCACCCCCACATCCATCGTCTCCGCCACCACCACCCCCACATCCACCTCCGCCTCCGCCGCCACCACCCCCACATCCGCCTCCGCCTCCGCCGCCTCCACACCCGCCGCCACCGCCCGCTCCTACACCTTGGAAATTGGCTTCCACATCGAGGCCGGCGGCTTCCCCACGAGCGCTCCCCGAGCAGAGACAATTCAAGATAAGGATTGTTAATTCCATCTTCAATGTACTAAAATCATGA

Protein sequence

MKFMEMTSDQSPPPPPQPPPPPSPPHPSSPPPPPPHPPPPPPPPPPHPPPPPPPPHPPPPPAPTPWKLASTSRPAASPRALPEQRQFKIRIVNSIFNVLKS
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 9..30
score: 40.91
coord: 48..65
score: 44.44
coord: 31..47
score: 45.88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC04G065900.1CcUC04G065900.1mRNA