CcUC04G063340 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC04G063340
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	50S ribosomal protein 5, chloroplastic
Location	CicolChr04: 18836438 .. 18838202 (-)
RNA-Seq Expression	CcUC04G063340
Synteny	CcUC04G063340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAGTGGGGGACTCCCAGACCAGAGAAAAACACCATGGCTTTTCTTCTCTACTCCAATCCCCTCTCCACCTCTCTCCATTCATTTCCCTTTTCTCCGTCTCCGTCGCCGTCATGTTTTCCAGCGACTTCTGCCACTCCGAGTAAGTCTCTCTTCCTGGATTTTGACGGGATCGAATGAATGTTTTTGTTTGATTTTTTATCTTCGTTTCTCTTTGTACTTCATGGTTTGCTGTGTGTTTATTCAAATGGCTAATTTTTGTTCTCGAACTCGAGAAACTATGTTGTTGTGCTTGAAATAATTTCATCGCAGTCAAACAGTTGGTATCTGTGTGCTGAGACTGTCGATTTTACGCTTCTCATTTGATGTGCTCTGGATCTCGCTTGCCTGAATGTGTTTTGTGTTCTGTATCTCGTGTTTTATATGCTGACTGCTCTGTTACTTGTTCATCATCCTCAATTTGATATATAGTTTACAAGTTTCCTAGTCTTGAAATACAGTTGTATTTCATTGAAGAGATATTGTTTTGTGAGTGAATTTCATATTTTATATATGTTGATTATTAATTTGATTCATGTATATCAAATAAAGAGAAATTAACATTGCAAGGATCCCTAGTACTCCACGCCATGATAGATAACATATTAAAAAAATGAACTCAATCAAAAGCCCTTGGAATAGATTACAGTGTAGTTAATCTTTGGTTATATTACAAGCTTGTTAAGGTCTCTAGACAAGCTATTTAATCTTGGTTATATTAATGAAAAAAATATTACAAGCTTGTTGGCGAAACTTTTAAAGTTGTGTCTACTAACTAATGGGTCTCTAAACTTTTAATACTGCGTATGGTAGATCCCCAAGGTCTAAACAATATCTAGTAGGTCTTTAAAATATCAGTCTTAAACTACTAACTTTGTCTCCATTTGGCTTTGAACTTTTAAAAACATCTCATTTATCAAGTTTAGGATCTATCAAACACTTTTTAAAATTAAGAGATTCGATTAGACATAATTCTAAAGCTTAGAGACCAAATTTATACATACTCTTGGCTTTAATTTGAATGATTATTTCCTTGCATTCTATGTATCCCAGCCCAATTACCACTCCTTTGTTGTGGTTTCCATTTCAGGTTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAACACTTCAATGGAGTCCAACTTCGAAACCCCTCTTTTGTTGAAAATACAATGTTGTTAGTTGTCAAAGCTGCGTCTGAGATTGATGCTACAGGAGAAACTGACAGTAGTGAACCGCAGCCCCCTGCAGAAGCTAAAACGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTGCAAGAAAGGCTGGAGCAGAAGGCAAGGATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAGCGCCATTTGAGGAAGAAGGGGCGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGAAAATCTTTAGCTCCTTCAATTCAATTCTTGCAGATTTAGAGGTGACCCCATTTCTCCTCATTGCTTCCAATTTACTCTGTCTAATTTCTTCATACTTTCAAGGAAATGTACTTGCTTTCTTTATATATCTGAAAGAATCCAGTGAGTAATGAAATGTGCAAATTGTGCTTAGTTTTGAATGACTAATGCCTAATGGTGAGTTGAAAGATAACTGTACAGTTCAACAAACTGAATACTTGATTTAGATTTTTATCTGTAGATCCCCTGATCTCTTGA

mRNA sequence

GTAGTGGGGGACTCCCAGACCAGAGAAAAACACCATGGCTTTTCTTCTCTACTCCAATCCCCTCTCCACCTCTCTCCATTCATTTCCCTTTTCTCCGTCTCCGTCGCCGTCATGTTTTCCAGCGACTTCTGCCACTCCGAGTTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAACACTTCAATGGAGTCCAACTTCGAAACCCCTCTTTTGTTGAAAATACAATGTTGTTAGTTGTCAAAGCTGCGTCTGAGATTGATGCTACAGGAGAAACTGACAGTAGTGAACCGCAGCCCCCTGCAGAAGCTAAAACGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTGCAAGAAAGGCTGGAGCAGAAGGCAAGGATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAGCGCCATTTGAGGAAGAAGGGGCGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGAAAATCTTTAGCTCCTTCAATTCAATTCTTGCAGATTTAGAGGTGACCCCATTTCTCCTCATTGCTTCCAATTTACTCTGTCTAATTTCTTCATACTTTCAAGGAAATGTACTTGCTTTCTTTATATATCTGAAAGAATCCAGTGAGTAATGAAATGTGCAAATTGTGCTTAGTTTTGAATGACTAATGCCTAATGGTGAGTTGAAAGATAACTGTACAGTTCAACAAACTGAATACTTGATTTAGATTTTTATCTGTAGATCCCCTGATCTCTTGA

Coding sequence (CDS)

ATGGCTTTTCTTCTCTACTCCAATCCCCTCTCCACCTCTCTCCATTCATTTCCCTTTTCTCCGTCTCCGTCGCCGTCATGTTTTCCAGCGACTTCTGCCACTCCGAGTTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAACACTTCAATGGAGTCCAACTTCGAAACCCCTCTTTTGTTGAAAATACAATGTTGTTAGTTGTCAAAGCTGCGTCTGAGATTGATGCTACAGGAGAAACTGACAGTAGTGAACCGCAGCCCCCTGCAGAAGCTAAAACGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTGCAAGAAAGGCTGGAGCAGAAGGCAAGGATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAGCGCCATTTGAGGAAGAAGGGGCGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGA

Protein sequence

MAFLLYSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

Homology

[Close]

BLAST of CcUC04G063340 vs. NCBI nr
Match: XP_038881132.1 (50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881133.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881134.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida])

HSP 1 Score: 250.8 bits (639), Expect = 7.9e-63
Identity = 139/156 (89.10%), Postives = 143/156 (91.67%), Query Frame = 0


Query: 2   AFLLYSNPLSTSLHSFPFS--PSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNP 61
           +FLL SNPLSTSLHSFPFS  PSPSPSCFPATSA PS MLLMKPIGFQPKHFNGV+L  P
Sbjct: 3   SFLLCSNPLSTSLHSFPFSPPPSPSPSCFPATSAAPSPMLLMKPIGFQPKHFNGVRLGKP 62

Query: 62  SFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKARM 121
           SFVEN   L+VKAASEIDA G+TDSSE QPPAEAK EDVPVDKLPLESKLQERLEQKARM
Sbjct: 63  SFVENMASLIVKAASEIDAMGDTDSSESQPPAEAKKEDVPVDKLPLESKLQERLEQKARM 122

Query: 122 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 123 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 158

[Close]

BLAST of CcUC04G063340 vs. NCBI nr
Match: XP_022154476.1 (50S ribosomal protein 5, chloroplastic [Momordica charantia])

HSP 1 Score: 244.6 bits (623), Expect = 5.7e-61
Identity = 135/157 (85.99%), Postives = 143/157 (91.08%), Query Frame = 0


Query: 1   MAFLLYSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRN 60
           MAFLL SNPLSTSL+S PF  SPSPSPSCFP TSA PSS+LLM+P+GFQPK FNGV+LRN
Sbjct: 1   MAFLLCSNPLSTSLYSSPFSPSPSPSPSCFPTTSAAPSSILLMRPVGFQPKIFNGVRLRN 60

Query: 61  PSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKAR 120
            SFVENT  L+VKA SEID TGETDS+EPQPPAEAK EDVPVDKLPLESKLQERLEQK R
Sbjct: 61  VSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTR 120

Query: 121 MKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           MKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 MKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of CcUC04G063340 vs. NCBI nr
Match: XP_022949869.1 (50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 241.1 bits (614), Expect = 6.3e-60
Identity = 135/159 (84.91%), Postives = 142/159 (89.31%), Query Frame = 0


Query: 1   MAFLLYSNPLSTSLHSFPF----SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQL 60
           MAFLL SNPLS SLHS  F    SPSPSPSCFPA  A  +SMLLMKP GFQPKHFNGV+L
Sbjct: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRL 60

Query: 61  RNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQK 120
           RNPSFVENT+  +VKAASEIDATGETDS+EP+PPAEAK EDV VDKLPLESKLQERLEQK
Sbjct: 61  RNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQK 120

Query: 121 ARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           ARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 159

[Close]

BLAST of CcUC04G063340 vs. NCBI nr
Match: XP_004144312.1 (50S ribosomal protein 5 alpha, chloroplastic [Cucumis sativus] >KGN54666.1 hypothetical protein Csa_012356 [Cucumis sativus])

HSP 1 Score: 240.7 bits (613), Expect = 8.2e-60
Identity = 136/154 (88.31%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 2   AFLLYSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSF 61
           +FLL SNPLSTS H   FS SPSPSCFP TSA PSSMLLMKPIGFQPKHFNGV+LRN SF
Sbjct: 3   SFLLSSNPLSTSFH---FSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSF 62

Query: 62  VENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKARMKL 121
           VENT  LVVKAASE DATGETDSS+ QP AEAK EDVPVDKLPLESKLQERLEQKARMKL
Sbjct: 63  VENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKL 122

Query: 122 AKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           AKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 123 AKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 153

[Close]

BLAST of CcUC04G063340 vs. NCBI nr
Match: KAG7013851.1 (50S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 240.0 bits (611), Expect = 1.4e-59
Identity = 135/157 (85.99%), Postives = 142/157 (90.45%), Query Frame = 0


Query: 1   MAFLLYSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRN 60
           MAFLL SNPLS SLHS  F  SPSPSPSCFPA  AT +SMLLMKP GFQPKHFNGV+LRN
Sbjct: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRN 60

Query: 61  PSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKAR 120
           PSFVENT+  +VKAASEIDATGETDS+EP+P AEAK EDV VDKLPLESKLQERLEQKAR
Sbjct: 61  PSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKEDVSVDKLPLESKLQERLEQKAR 120

Query: 121 MKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           MKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 MKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of CcUC04G063340 vs. ExPASy Swiss-Prot
Match: Q9LER7 (50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP5 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.9e-15
Identity = 74/148 (50.00%), Postives = 89/148 (60.14%), Query Frame = 0


Query: 13  SLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKA 72
           SL S     S S S    + +  S +L +KP   + K  N V L   S   +   +VVKA
Sbjct: 8   SLPSLSSLSSSSSSRLLQSPSFASPVLSLKPNAVESK--NRVSLSAYSLNSSHGRIVVKA 67

Query: 73  ASEIDATGETDSSEPQPPAEAKT--EDVPVDKLPLESKLQER---LEQKARMKLAKKIRL 132
           A    A+G  D +EP+   E KT    VPVDKLPLESK  +    LE + +MKLAKKIRL
Sbjct: 68  A----ASG-VDGAEPESKEEPKTVVAAVPVDKLPLESKEAKEKLLLELRLKMKLAKKIRL 127

Query: 133 RRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           RRKRLV+KR +RKKGRWPPSKMKK KNV
Sbjct: 128 RRKRLVRKRKMRKKGRWPPSKMKKNKNV 148

[Close]

BLAST of CcUC04G063340 vs. ExPASy Swiss-Prot
Match: P11891 (50S ribosomal protein 5, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.4e-15
Identity = 62/142 (43.66%), Postives = 84/142 (59.15%), Query Frame = 0


Query: 15  HSFPFSP-SPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAA 74
           +SF  +P + S S FP  +A P S +    IG       G ++  P   +     +  A+
Sbjct: 7   NSFTTTPVTSSSSLFPHPTANPISRV---RIGLPTNCLKGFRILTPIVQKPRKNSIFIAS 66

Query: 75  SEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV 134
           +   A         +  ++ +++ V VDKLPLESKL+ER E+  +MKLAKKIRL+RKRLV
Sbjct: 67  AAAGADSNVADGVEESESKKESDVVSVDKLPLESKLKEREERMLKMKLAKKIRLKRKRLV 126

Query: 135 QKRHLRKKGRWPPSKMKKLKNV 156
           QKR LRKKG WPPSKMKKL+ V
Sbjct: 127 QKRRLRKKGNWPPSKMKKLEGV 145

[Close]

BLAST of CcUC04G063340 vs. ExPASy Swiss-Prot
Match: P27684 (50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP5 PE=1 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 3.2e-14
Identity = 51/91 (56.04%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 65  TMLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKARMKLAKK 124
           T++ +V AA+E  A  + D S      + +  ++ V  LPLESKLQ +LEQK +MK+AKK
Sbjct: 58  TVVAMVSAAAEETAGEDGDQS------KVEEANISVQNLPLESKLQLKLEQKIKMKMAKK 117

Query: 125 IRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           IRLRR RL++KR LRK+G WPPSKMKKLKNV
Sbjct: 118 IRLRRNRLMRKRKLRKRGAWPPSKMKKLKNV 142

[Close]

BLAST of CcUC04G063340 vs. ExPASy TrEMBL
Match: A0A6J1DNT9 (50S ribosomal protein 5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021747 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.7e-61
Identity = 135/157 (85.99%), Postives = 143/157 (91.08%), Query Frame = 0


Query: 1   MAFLLYSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRN 60
           MAFLL SNPLSTSL+S PF  SPSPSPSCFP TSA PSS+LLM+P+GFQPK FNGV+LRN
Sbjct: 1   MAFLLCSNPLSTSLYSSPFSPSPSPSPSCFPTTSAAPSSILLMRPVGFQPKIFNGVRLRN 60

Query: 61  PSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKAR 120
            SFVENT  L+VKA SEID TGETDS+EPQPPAEAK EDVPVDKLPLESKLQERLEQK R
Sbjct: 61  VSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTR 120

Query: 121 MKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           MKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 MKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of CcUC04G063340 vs. ExPASy TrEMBL
Match: A0A6J1GE62 (50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111453134 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.0e-60
Identity = 135/159 (84.91%), Postives = 142/159 (89.31%), Query Frame = 0


Query: 1   MAFLLYSNPLSTSLHSFPF----SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQL 60
           MAFLL SNPLS SLHS  F    SPSPSPSCFPA  A  +SMLLMKP GFQPKHFNGV+L
Sbjct: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRL 60

Query: 61  RNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQK 120
           RNPSFVENT+  +VKAASEIDATGETDS+EP+PPAEAK EDV VDKLPLESKLQERLEQK
Sbjct: 61  RNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQK 120

Query: 121 ARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           ARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 159

[Close]

BLAST of CcUC04G063340 vs. ExPASy TrEMBL
Match: A0A0A0L3F4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 4.0e-60
Identity = 136/154 (88.31%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 2   AFLLYSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSF 61
           +FLL SNPLSTS H   FS SPSPSCFP TSA PSSMLLMKPIGFQPKHFNGV+LRN SF
Sbjct: 3   SFLLSSNPLSTSFH---FSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSF 62

Query: 62  VENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKARMKL 121
           VENT  LVVKAASE DATGETDSS+ QP AEAK EDVPVDKLPLESKLQERLEQKARMKL
Sbjct: 63  VENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKL 122

Query: 122 AKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           AKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 123 AKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 153

[Close]

BLAST of CcUC04G063340 vs. ExPASy TrEMBL
Match: A0A6J1HS41 (50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467286 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 8.3e-58
Identity = 130/157 (82.80%), Postives = 138/157 (87.90%), Query Frame = 0


Query: 1   MAFLLYSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRN 60
           MAFLL SNPLS SLHS     SPSPSPSCFP   +  +SM LMKP GFQPKHFNGV+LRN
Sbjct: 1   MAFLLCSNPLSISLHSSTLSPSPSPSPSCFPGNFSALNSMSLMKPTGFQPKHFNGVRLRN 60

Query: 61  PSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKAR 120
           PSFVENT+  +VKAASEID TGETDS+EP+P AEAK EDVPVDKLPLESKLQERLEQKAR
Sbjct: 61  PSFVENTVSFIVKAASEIDTTGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQKAR 120

Query: 121 MKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           MKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 MKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of CcUC04G063340 vs. ExPASy TrEMBL
Match: A0A1S3C2X0 (50S ribosomal protein 5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495861 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 4.2e-54
Identity = 128/154 (83.12%), Postives = 130/154 (84.42%), Query Frame = 0


Query: 2   AFLLYSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSF 61
           +FLL SNPLSTS H     P     CFP TSA PSSMLLMKPIGFQPK FNGV+LRN  F
Sbjct: 3   SFLLCSNPLSTSFHFSTLHP-----CFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPF 62

Query: 62  VENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKARMKL 121
           VENT  LVVKAASE DATGE DSSE QP AEAK EDVPVDKLPLESKLQERLEQKARMKL
Sbjct: 63  VENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKL 122

Query: 122 AKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           AKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 123 AKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 151

[Close]

BLAST of CcUC04G063340 vs. TAIR 10
Match: AT3G56910.1 (plastid-specific 50S ribosomal protein 5 )

HSP 1 Score: 82.4 bits (202), Expect = 3.5e-16
Identity = 74/148 (50.00%), Postives = 89/148 (60.14%), Query Frame = 0


Query: 13  SLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKA 72
           SL S     S S S    + +  S +L +KP   + K  N V L   S   +   +VVKA
Sbjct: 8   SLPSLSSLSSSSSSRLLQSPSFASPVLSLKPNAVESK--NRVSLSAYSLNSSHGRIVVKA 67

Query: 73  ASEIDATGETDSSEPQPPAEAKT--EDVPVDKLPLESKLQER---LEQKARMKLAKKIRL 132
           A    A+G  D +EP+   E KT    VPVDKLPLESK  +    LE + +MKLAKKIRL
Sbjct: 68  A----ASG-VDGAEPESKEEPKTVVAAVPVDKLPLESKEAKEKLLLELRLKMKLAKKIRL 127

Query: 133 RRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           RRKRLV+KR +RKKGRWPPSKMKK KNV
Sbjct: 128 RRKRLVRKRKMRKKGRWPPSKMKKNKNV 148

The following BLAST results are available for this feature:

BLAST of CcUC04G063340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881132.1	7.9e-63	89.10	50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881133.1 50S r...	[more]
XP_022154476.1	5.7e-61	85.99	50S ribosomal protein 5, chloroplastic [Momordica charantia]	[more]
XP_022949869.1	6.3e-60	84.91	50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita moschata]	[more]
XP_004144312.1	8.2e-60	88.31	50S ribosomal protein 5 alpha, chloroplastic [Cucumis sativus] >KGN54666.1 hypot...	[more]
KAG7013851.1	1.4e-59	85.99	50S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosper...	[more]

BLAST of CcUC04G063340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LER7	4.9e-15	50.00	50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP5 ...	[more]
P11891	6.4e-15	43.66	50S ribosomal protein 5, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV...	[more]
P27684	3.2e-14	56.04	50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSR...	[more]

BLAST of CcUC04G063340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNT9	2.7e-61	85.99	50S ribosomal protein 5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1GE62	3.0e-60	84.91	50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A0A0L3F4	4.0e-60	88.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1	[more]
A0A6J1HS41	8.3e-58	82.80	50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN...	[more]
A0A1S3C2X0	4.2e-54	83.12	50S ribosomal protein 5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495861 P...	[more]

BLAST of CcUC04G063340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56910.1	3.5e-16	50.00	plastid-specific 50S ribosomal protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..155
None	No IPR available	PANTHER	PTHR34678:SF1	50S RIBOSOMAL PROTEIN 5, CHLOROPLASTIC	coord: 1..155
IPR040307	50S ribosomal protein 5, chloroplastic	PANTHER	PTHR34678	50S RIBOSOMAL PROTEIN 5, CHLOROPLASTIC	coord: 1..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC04G063340.1	CcUC04G063340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032544	plastid translation
cellular_component	GO:0009536	plastid
cellular_component	GO:0005840	ribosome