CcUC04G061920 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC04G061920
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr04: 13746683 .. 13747586 (+)
RNA-Seq ExpressionCcUC04G061920
SyntenyCcUC04G061920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGAAGAGAAATTAGGCCATGTTTGCCGAGAGAGGCCATCTTCTCTCAGGCCAGCAGTCTACTAGAAGTAGAAGACTGCTCTATGACGGGCTTCCCCGTTCCTTGGGCTCTGCTCGCTTGTCTACGCTCCGATTCTGCAAGTAACAATAGCAAAACTCTCTTTCCTTGCCTGCATTAAGATTTCAAACTTATTGTCAAAAAAAAGGCAATCAATAAAAAAAATGGAAATAGTGAATCAAGATCTAGATGGATCCCTATCTTTATCTCTATCCACGGAGATACTGATACATATGGATAGAAATCGATCTATGAATCGATCTAGACGAGACTCGAGACGTATAGATATGTCTCTATGAGCGACTACGCCGATCTTTATATGTTTTGGCCACGTCCGTTTCCGCTCCGAAGAGGAAGGTTTGGATCTTTCAATCTTATGTCATGAGGGATGTGACCTATGTTAGGTCCATAAGATACCACAACTTTTAGTGTTCTATGATTCACCTCCGAATAATGAGTAGGTAGTTCGATCCTTTTGATTTTGCTCTTCATAGTAAACTGATGGGGGATGCGGATCAATAGGTCGAATTACTATATAAAGAAGAGTTGTAAACTATAGGACTTCTTGTTCGAGTAGGAAGATTTCGGTTTTTCTCGTTCCTTCTATTCGATAAGAATAGGGATTTCAAATGATACAAATTCCTCTTCATTCTGTTGTGCTCAGCGAAGGAATTGCCTAAGCATACTTTTTCTGATCCAAACTTCTTTGTTCTTTCTAAGTCTTCTTCTTGCATAGAAGAACGCAACTGTTGCAAAAATCGGGATTTTAGTAGTAGGCAACATCCCCTCTTAGTTTTGAGTAGGTGGAACCATTCTGTTTTAGTTCTTCTCCACATTCTTACCGGG

mRNA sequence

AAAGAAGAGAAATTAGGCCATGTTTGCCGAGAGAGGCCATCTTCTCTCAGGCCAGCAGTCTACTAGAAGTAGAAGACTGCTCTATGACGGGCTTCCCCGTTCCTTGGGCTCTGCTCGCTTGTCTACGCTCCGATTCTGCAACGAAGGAATTGCCTAAGCATACTTTTTCTGATCCAAACTTCTTTGTTCTTTCTAAGTCTTCTTCTTGCATAGAAGAACGCAACTGTTGCAAAAATCGGGATTTTAGTAGTAGGCAACATCCCCTCTTAGTTTTGAGTAGGTGGAACCATTCTGTTTTAGTTCTTCTCCACATTCTTACCGGG

Coding sequence (CDS)

ATGACGGGCTTCCCCGTTCCTTGGGCTCTGCTCGCTTGTCTACGCTCCGATTCTGCAACGAAGGAATTGCCTAAGCATACTTTTTCTGATCCAAACTTCTTTGTTCTTTCTAAGTCTTCTTCTTGCATAGAAGAACGCAACTGTTGCAAAAATCGGGATTTTAGTAGTAGGCAACATCCCCTCTTAGTTTTGAGTAGGTGGAACCATTCTGTTTTAGTTCTTCTCCACATTCTTACCGGG

Protein sequence

MTGFPVPWALLACLRSDSATKELPKHTFSDPNFFVLSKSSSCIEERNCCKNRDFSSRQHPLLVLSRWNHSVLVLLHILTG
Homology
[Close]
BLAST of CcUC04G061920 vs. NCBI nr
Match: KAG6467066.1 (hypothetical protein ZIOFF_075109 [Zingiber officinale] >KAG6467653.1 hypothetical protein ZIOFF_074494 [Zingiber officinale])

HSP 1 Score: 84.0 bits (206), Expect = 6.6e-13
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 16  SDSATKELPKHTFSDPNFFVLSKSSSCIEERNCCKNRDFSSRQHPL 62
           S +  KELPKHTF+DPNFFVLSKSSSCIEERN CKNRD SSR+HPL
Sbjct: 88  SRAIAKELPKHTFADPNFFVLSKSSSCIEERNSCKNRDLSSRRHPL 133

[Close]
BLAST of CcUC04G061920 vs. NCBI nr
Match: GEW83036.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 65.1 bits (157), Expect = 3.2e-07
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 19  ATKELPKHTFSDPNFFVLSKSSSCIEERNCCK 51
           A K +PKHTFSDPNFFVLSKS SCIEERNCCK
Sbjct: 738 ANKSMPKHTFSDPNFFVLSKSLSCIEERNCCK 769

The following BLAST results are available for this feature:
BLAST of CcUC04G061920 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6467066.16.6e-1382.61hypothetical protein ZIOFF_075109 [Zingiber officinale] >KAG6467653.1 hypothetic... [more]
GEW83036.13.2e-0787.50hypothetical protein [Tanacetum cinerariifolium][more]
BLAST of CcUC04G061920 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC04G061920 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC04G061920 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC04G061920.1CcUC04G061920.1mRNA