CcUC04G059590 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC04G059590
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr04: 693991 .. 694286 (+)
RNA-Seq ExpressionCcUC04G059590
SyntenyCcUC04G059590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCATCTGATCGGTCCTTTAGGCATGCAATTTAGAAAGGTTGAGGCAGGGGTTGGTGCCTTTGCACCTATTCCACTAACATCAAAAGTAGTAAACCCATCAGAGCTTGGAGGAAGGGAGATTGATGACTCAGGTACTTCGACAATAGATTATCTAAAAGTAAGAACTGTAGCTTCCAAAGTTGCTGGAGCAGGCACTAGTACTTAATCGAGCATGATTCTAAAAGTTGCCATGAGTGTGGATGGAGAAGACAAGGCAAGGAGAAAGAAGAATGTTGTGATAAATAAAGTATCATAT

mRNA sequence

ACCATCTGATCGGTCCTTTAGGCATGCAATTTAGAAAGGTTGAGGCAGGGGTTGGTGCCTTTGCACCTATTCCACTAACATCAAAAGTAGTAAACCCATCAGAGCTTGGAGGAAGGGAGATTGATGACTCAGGTACTTCGACAATAGATTATCTAAAAGTAAGAACTGTAGCTTCCAAAGTTGCTGGAGCAGGCACTATTGCCATGAGTGTGGATGGAGAAGACAAGGCAAGGAGAAAGAAGAATGTTGTGATAAATAAAGTATCATAT

Coding sequence (CDS)

ATGCAATTTAGAAAGGTTGAGGCAGGGGTTGGTGCCTTTGCACCTATTCCACTAACATCAAAAGTAGTAAACCCATCAGAGCTTGGAGGAAGGGAGATTGATGACTCAGGTACTTCGACAATAGATTATCTAAAAGTAAGAACTGTAGCTTCCAAAGTTGCTGGAGCAGGCACTATTGCCATGAGTGTGGATGGAGAAGACAAGGCAAGGAGAAAGAAGAATGTTGTGATAAATAAAGTATCATAT

Protein sequence

MQFRKVEAGVGAFAPIPLTSKVVNPSELGGREIDDSGTSTIDYLKVRTVASKVAGAGTIAMSVDGEDKARRKKNVVINKVSY
Homology
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BLAST of CcUC04G059590 vs. NCBI nr
Match: KAE8649712.1 (hypothetical protein Csa_012861, partial [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 2.4e-10
Identity = 46/79 (58.23%), Postives = 55/79 (69.62%), Query Frame = 0 

Query: 7   EAGVGAFAPIPLTSKVVNPSELGGREI--DDSGTSTIDYLKVRTV-ASKVAGAG------ 66
           +AG GA APIPL SK++N SE+GGREI  DDSGTS ID LK+R V +S+V G        
Sbjct: 22  DAGNGALAPIPLGSKLINSSEVGGREIDDDDSGTSAIDSLKLRMVDSSRVVGGCAKSSMP 81

Query: 67  -TIAMSVDGEDKARRKKNV 76
             +AM +DGED A RKKNV
Sbjct: 82  LVVAMILDGEDMAMRKKNV 100

The following BLAST results are available for this feature:
BLAST of CcUC04G059590 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649712.12.4e-1058.23hypothetical protein Csa_012861, partial [Cucumis sativus][more]
BLAST of CcUC04G059590 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC04G059590 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC04G059590 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC04G059590.1CcUC04G059590.1mRNA