CcUC03G057340 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC03G057340
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr03: 29252813 .. 29253339 (-)
RNA-Seq ExpressionCcUC03G057340
SyntenyCcUC03G057340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATGGAGATGACGGGGCGGCTCGGTTTCATTGTAAATTTTGAATAACAATCCCTGCATGTATATTTAACGTAAACCACAATAATAATAAAAGAGAACTCATTCAGCTCAAGCAAGGCCAAATGGTTTCTCTTTATCGTTTAAGATAAGCATTTTCAGTTACTCGTTTCGGAAGCTCGAAAGATCCGTACTTCCAAGAAGTATCTGACTGTTGAACACTGCTGATGACAAGATAAAAATGGCAACCAGAAAGAACAATGAAAAAGGAAATTCTTTATTCGTATACTTGATGACAGTTCTTGCTATCATCCATTGATGGATTTGATCTAATTCGAAAGGAGAATTTCAACAGCCTGCAGACAAACCATATGGTTCTAATTTATTTGGCAAAGGAACTGAAGAAGGATGATTTCATTGGAGACGCTGGCGAGGAGGGAGACCTCTCGTCCCCATTTATTAACCATGTCAGAGCCAAAGGAAGGACTTGTGCCCCAATGCCAGTAACATCCGCTCCAACATCATAA

mRNA sequence

ATGGCCATGGAGATGACGGGGCGGCTCGCTCAAGCAAGGCCAAATGGTTTCTCTTTATCGTTTAAGATAAGCATTTTCAGTTACTCGTTTCGGAAGCTCGAAAGATCCTTCTTGCTATCATCCATTGATGGATTTGATCTAATTCGAAAGGAGAATTTCAACAGCCTGCAGACAAACCATATGGTTCTAATTTATTTGGCAAAGGAACTGAAGAAGGATGATTTCATTGGAGACGCTGGCGAGGAGGGAGACCTCTCGTCCCCATTTATTAACCATGTCAGAGCCAAAGGAAGGACTTGTGCCCCAATGCCAGTAACATCCGCTCCAACATCATAA

Coding sequence (CDS)

ATGGCCATGGAGATGACGGGGCGGCTCGCTCAAGCAAGGCCAAATGGTTTCTCTTTATCGTTTAAGATAAGCATTTTCAGTTACTCGTTTCGGAAGCTCGAAAGATCCTTCTTGCTATCATCCATTGATGGATTTGATCTAATTCGAAAGGAGAATTTCAACAGCCTGCAGACAAACCATATGGTTCTAATTTATTTGGCAAAGGAACTGAAGAAGGATGATTTCATTGGAGACGCTGGCGAGGAGGGAGACCTCTCGTCCCCATTTATTAACCATGTCAGAGCCAAAGGAAGGACTTGTGCCCCAATGCCAGTAACATCCGCTCCAACATCATAA

Protein sequence

MAMEMTGRLAQARPNGFSLSFKISIFSYSFRKLERSFLLSSIDGFDLIRKENFNSLQTNHMVLIYLAKELKKDDFIGDAGEEGDLSSPFINHVRAKGRTCAPMPVTSAPTS
Homology
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BLAST of CcUC03G057340 vs. NCBI nr
Match: KAG6589954.1 (Receptor-like protein kinase HSL1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-11
Identity = 38/69 (55.07%), Postives = 49/69 (71.01%), Query Frame = 0 

Query: 32   KLERSFLLSSIDGFDLIRKENFNSLQTNHMVLIYLAKELKKDDFIGDAGEEGDLSSPFIN 91
            +L++   +S+    +   +E+FNSLQTNHMVLIY      KDDFIGD GEEG+ SSPFIN
Sbjct: 1027 QLKQGQTVSAFSAKEPFFQEDFNSLQTNHMVLIYWQMNSGKDDFIGDDGEEGNPSSPFIN 1086

Query: 92   HVRAKGRTC 101
            H++AKG  C
Sbjct: 1087 HIKAKGNLC 1095

The following BLAST results are available for this feature:
BLAST of CcUC03G057340 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6589954.11.7e-1155.07Receptor-like protein kinase HSL1, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CcUC03G057340 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC03G057340 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC03G057340 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC03G057340.1CcUC03G057340.1mRNA