CcUC03G053770 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC03G053770
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	pentatricopeptide repeat-containing protein At1g62350
Location	CicolChr03: 23530688 .. 23534297 (-)
RNA-Seq Expression	CcUC03G053770
Synteny	CcUC03G053770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCGTCTTGCTCCAAATCTTCTTCGCAGAATCTCAAATAGGGCCACTTCCACAATCCATTTTCATCGCTTTTCCCTTCCCACATTCCTCAGCCACGATCTGTTACAGCAACAATTGCTGTTACGCTTCATCGCTGGCTCTGCTTCCAGCCCTAGCCTCTCAATATGGAGGAGGAAGAAGGAGATGGGCAAGGAGGGTCTGATTGTGGTCAAAGAACTCAAGAGACTTCAGTCCAATTTCATTCGCCTCGACCGCTTCATTTCCTCCCATGTCTCTCGCTTGCTCAAGTCTGACCTTGTCGCTGTTCTGGTTGAGCTTCAGAGGCAGAATCAGGTCTTTCTGTGCATGAAGGTCTGCCCTCTTTTGCCCTCTCTATTATTATATCTCTTCCCCTTTATGACATATGCTGAATTTTCTTGGGAGATAATGCTGACGGTTAATTATAAAGCTCTGTTAAGCGAAATGATAATTTAATTAATTTCTTGCTATGATATATTGGTTGATTCGGAATTTTTGTAGTTTGGATGAATTACGTATATAAGAATATCATTTTGACCTTAACATTTACGGATTGGAAATAACACAGGTATGGTTTTCGTCGATTTTTCATCAACCTTTGTGTTTTTAGTGAAATTTCCTGTTCAAGCTTTTGATGATTGCATTTTGAAGTGGTCGAAAGTTATGGTGAACTCTGGAAGGGTAGCTGGAGAAAATAGATAGCCCATTATGACTTGCAAACCTTAACTTAGCTCCATTGAAATTAGGAGCACTTACTTGCACTAGCCTTCAGGGCGGAACGATTTTCTTCAACAGGCTGGGTGTGTTGGGGATATAATATAAAAGGACGGGTTAAGAAAAGTAGACTCAATAATCAAATATCAACATGTTAGTTGAGTTGAGACTGTGGATGTGTGAGAAATTATGTTGGTGCTATTGTTTCATGTTATCTGTACTAATAGGGGAAGACTGAAGAGTAATGATGCAAAGATCATCAAGCCTCAATGGAATGAGGTTATCTTGGGATAAGCCTTTAAGACAGCTCAGAATACGGAAGGGGAAAAAAGTCTTAGAGGTCGGATGAATTAGGGGTGGACTGTTAAATAACCAAACACTGCCCTCTTGTTAAAGTGGTGTTGGCTGTTCTCCCTTGAATAAAATAGTCCGGGGTGGAGAGTTATTGTTGCTATATATGGAATGTAGTCTAATGGTTGGCTTATTAAACGTGCTAAGGGTTGCCAATGGAAGGCCTTGGATAGACTTTGACAAAAATAGGTAGTTGTTCCTTGCTCTAGTGAATTTTAAAGTGTGCAGTAGCACAAAAGTCTAATTTTGAGAAGACACATGGGCAACATATGTCCCTCTCCACGTGAAATACCATATTTTTTATGCCTTATCTTCCAGAAAAGAGCTTCAATCTCCCTGCTAATGCCTCTATCCTCCTCGGCATGGAAGGTAAAAATATCCAAGAAGGTGAAGTCTTTGTGTGGCAGGTTTTACATGGATGACTTAACACCTTAGCTCAGATCTCGGCCAGAAAGTCCTCCTTGGTTGGGCCTCACTGCTGTATTCTTTACAATCAGGCAGCTGAGGACCTTGATCATATCCTTTGGAGCCACTTGGGCTATTTGGTTTTGTTTGATTTGTTCAAGGCTTTCAGCTGTAGCTTTGTTAGCTTCCAGGATTATAGGGAGTCCATTGAGGAATAATTCTTCCACCTGCCTTTTCGTGAGAAAGGATTGTTTCTGTGGTTGGGGTGTGCGTTATTTTGTGGTGCGAGAGAAACAATAGAATCTTTAGGAGAGGAATTCCAATATTGATGTTTGGTCTTTGCTAGATTCTCTGTTTTTCTTTGGGCCTTGATGTCAAGGCCTTTTTTTAAACATCTCATCATGACTTAATTTACTTGATTGGAGCCTCCTCTTGTTGTTGGGTTCAGTTTTTTTTTCTTTTATTTATTTATTTATAAATTATTAAAAAAAAAAAAAAGGAAAATTAAGTCTGTGTATTCAATGAAAGTATGGTACTTCAGAAAAGAATAATTACTTTAACTACATTAACCCATAACAAATGAGGTGGAGGAGAAAGGCAATGAGTAAATGGAGAGAATTGCTCTGGGAGTCATTAGAGAAAACCCACAGAATCTGAAGCATTCCGAATAACTGCTGCCAAAAAGATAATGCACAAGAGCATTGAAGGAGTAAGTGGCTTAAACTTTCTGAATCCGATTGACACAGAGAACAAGAAACATCTCTTTCTTTTTAAACGGATGTGGAATTTTTTAAACAAAATATCAGCATGAGAGAGGAAGATTATTACTAGCTTATATGGTTCAGTTTAGATATATGAGATTGGTGGACAAGCTCCTCTAAATCTAAATCTCCAAAACTCAAGATCATCAATGACCAACTGCATAGGGAACTACTTTTTCAGTTTATCAGATTGCAAGTTTGCTAACTATTGGATGTCATTGGGTCAGGAGTACTACTTTTGGCAGATAAAAAATTTAAAGTATGCTGGCCTTTTTCTGTGTACACTGTACATTAGTCTAGGGCTCGTTTGTTTTCCTGGAGGCGAGGTGCACATAAAATATTGTGTCCATGAGTGATACATCTATTATAAACAGAAAGTATACCGTTATATTATTAATAGGGGATGTAGTCCACTAGAACGTAAGATGCACTGCATAACTAGGCGTGTATGTCTCCTTTAGTGACAATAAAGTGATTTGACAAATATCCATCTTCTTATGTAACTTTAAGTAAAATAAATGAAAAGAATCTACTTATGCTTAATCTTGTGTTTCTTAGTGGGCATTTGACTAATCTACATTACTATATTGCACTTTTATGTTCAAGAGATAATGAATGACAAGTTTGAAAATATTTTATGTCGGAACCGACATGTAGGCAGATTTGTTTGTTTGTTTGGTCAACTATTGGCTTTGAAGGGCCTATTCTCTTTCCAATTATTTTTTCTTTAAAATGATGCAAGCCTATGACCTTATATCCTAGAAAATCTCTCTCTACTGTCTTGATAATTTAATATATTGTCTATTCTCTAGCTCTTGCAGTTTATTATTTAGCAAAGCTACCATTTGTATTTTTTATTTAAAAAATGCTTTTTTAAGTTGATAGAGACCTTTGTTTTTATCCCATCGATTGCATTATTGAGACCTGTCTGACCCTTTCAGTTATATAATGTGGTTCGTAAAGAAGTATGGTATCGGCCCGACATGTTCTTTTATAGAGATATGCTTATGATGCTTGCAAAGAACAAAAGGGTGGAAGAAACAAAACAAGTTTGGGAGGATCTGAAAAAAGAGGGAGTATTATTTGATCAGCATACTTTTGGAGACATTATTCGGGCATACTTGGATAATGCAATGCCCTCTGAGGCCATGGATATATATCGTGAAATGAGAGAATCTCCTGATAGGCCATTATCTTTGCCTTTTCGTGTAATTTTGAAGGGACTTATTCCATACCCAGAATTGAGAGAACAAATTAAAGATGACTTCTTGGAGCTCTTCCCTGATATGATCGTCTATGACCCACCAGAAGACTTGTTTGATGAAGATGAAGACAGGAGGAAGAGTGAAGATGATTAA

mRNA sequence

ATGCTTCGTCTTGCTCCAAATCTTCTTCGCAGAATCTCAAATAGGGCCACTTCCACAATCCATTTTCATCGCTTTTCCCTTCCCACATTCCTCAGCCACGATCTGTTACAGCAACAATTGCTGTTACGCTTCATCGCTGGCTCTGCTTCCAGCCCTAGCCTCTCAATATGGAGGAGGAAGAAGGAGATGGGCAAGGAGGGTCTGATTGTGGTCAAAGAACTCAAGAGACTTCAGTCCAATTTCATTCGCCTCGACCGCTTCATTTCCTCCCATGTCTCTCGCTTGCTCAAGTCTGACCTTGTCGCTGTTCTGGTTGAGCTTCAGAGGCAGAATCAGGTCTTTCTGTGCATGAAGGAGTACTACTTTTGGCAGATAAAAAATTTAAAGTATGCTGGCCTTTTTCTGTGTACACTGTACATTAGTCTAGGGCTCGTTTGTTTTCCTGGAGGCGAGTTATATAATGTGGTTCGTAAAGAAGTATGGTATCGGCCCGACATGTTCTTTTATAGAGATATGCTTATGATGCTTGCAAAGAACAAAAGGGTGGAAGAAACAAAACAAGTTTGGGAGGATCTGAAAAAAGAGGGAGTATTATTTGATCAGCATACTTTTGGAGACATTATTCGGGCATACTTGGATAATGCAATGCCCTCTGAGGCCATGGATATATATCGTGAAATGAGAGAATCTCCTGATAGGCCATTATCTTTGCCTTTTCGTGTAATTTTGAAGGGACTTATTCCATACCCAGAATTGAGAGAACAAATTAAAGATGACTTCTTGGAGCTCTTCCCTGATATGATCGTCTATGACCCACCAGAAGACTTGTTTGATGAAGATGAAGACAGGAGGAAGAGTGAAGATGATTAA

Coding sequence (CDS)

ATGCTTCGTCTTGCTCCAAATCTTCTTCGCAGAATCTCAAATAGGGCCACTTCCACAATCCATTTTCATCGCTTTTCCCTTCCCACATTCCTCAGCCACGATCTGTTACAGCAACAATTGCTGTTACGCTTCATCGCTGGCTCTGCTTCCAGCCCTAGCCTCTCAATATGGAGGAGGAAGAAGGAGATGGGCAAGGAGGGTCTGATTGTGGTCAAAGAACTCAAGAGACTTCAGTCCAATTTCATTCGCCTCGACCGCTTCATTTCCTCCCATGTCTCTCGCTTGCTCAAGTCTGACCTTGTCGCTGTTCTGGTTGAGCTTCAGAGGCAGAATCAGGTCTTTCTGTGCATGAAGGAGTACTACTTTTGGCAGATAAAAAATTTAAAGTATGCTGGCCTTTTTCTGTGTACACTGTACATTAGTCTAGGGCTCGTTTGTTTTCCTGGAGGCGAGTTATATAATGTGGTTCGTAAAGAAGTATGGTATCGGCCCGACATGTTCTTTTATAGAGATATGCTTATGATGCTTGCAAAGAACAAAAGGGTGGAAGAAACAAAACAAGTTTGGGAGGATCTGAAAAAAGAGGGAGTATTATTTGATCAGCATACTTTTGGAGACATTATTCGGGCATACTTGGATAATGCAATGCCCTCTGAGGCCATGGATATATATCGTGAAATGAGAGAATCTCCTGATAGGCCATTATCTTTGCCTTTTCGTGTAATTTTGAAGGGACTTATTCCATACCCAGAATTGAGAGAACAAATTAAAGATGACTTCTTGGAGCTCTTCCCTGATATGATCGTCTATGACCCACCAGAAGACTTGTTTGATGAAGATGAAGACAGGAGGAAGAGTGAAGATGATTAA

Protein sequence

MLRLAPNLLRRISNRATSTIHFHRFSLPTFLSHDLLQQQLLLRFIAGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKEYYFWQIKNLKYAGLFLCTLYISLGLVCFPGGELYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNAMPSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQIKDDFLELFPDMIVYDPPEDLFDEDEDRRKSEDD

Homology

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BLAST of CcUC03G053770 vs. NCBI nr
Match: XP_008450338.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Cucumis melo])

HSP 1 Score: 449.9 bits (1156), Expect = 1.7e-122
Identity = 240/289 (83.04%), Postives = 246/289 (85.12%), Query Frame = 0


Query: 1   MLRLAPNLLRRISNRATSTIHFHRFSLPTFLSHDLLQQQLLLRFIAGSASSPSLSIWRRK 60
           MLRLAPNLLR+IS+   S+  FHRFSL TFL+ DLLQQQLLLRFIAGSASSPSLSIWRRK
Sbjct: 1   MLRLAPNLLRKISSSPVSSTPFHRFSLSTFLNLDLLQQQLLLRFIAGSASSPSLSIWRRK 60

Query: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKEY 120
           KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQN VFLCMK  
Sbjct: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMK-- 120

Query: 121 YFWQIKNLKYAGLFLCTLYISLGLVCFPGGELYNVVRKEVWYRPDMFFYRDMLMMLAKNK 180
                                          LYNVVRKEVWYRPDMFFYRDMLMMLAKNK
Sbjct: 121 -------------------------------LYNVVRKEVWYRPDMFFYRDMLMMLAKNK 180

Query: 181 RVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNAMPSEAMDIYREMRESPDRPLSLPFR 240
           RVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNAM SEAMDIYREMRESPDRPLSLPFR
Sbjct: 181 RVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNAMLSEAMDIYREMRESPDRPLSLPFR 240

Query: 241 VILKGLIPYPELREQIKDDFLELFPDMIVYDPPEDLFDEDEDRRKSEDD 290
           VILKGLIPYPELREQ+KDDFLELFPDMIVYDPPEDLF+EDEDR KSEDD
Sbjct: 241 VILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDRNKSEDD 256

[Close]

BLAST of CcUC03G053770 vs. NCBI nr
Match: XP_004139064.1 (pentatricopeptide repeat-containing protein At1g62350 isoform X1 [Cucumis sativus] >KAE8653533.1 hypothetical protein Csa_007495 [Cucumis sativus])

HSP 1 Score: 446.4 bits (1147), Expect = 1.8e-121
Identity = 238/289 (82.35%), Postives = 244/289 (84.43%), Query Frame = 0


Query: 1   MLRLAPNLLRRISNRATSTIHFHRFSLPTFLSHDLLQQQLLLRFIAGSASSPSLSIWRRK 60
           MLRLAPNLLR+IS+   S+  FHRFSL TFL+ DLLQQQLLLRFI GSASSPSLSIWRRK
Sbjct: 1   MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRK 60

Query: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKEY 120
           KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQN VFLCMK  
Sbjct: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMK-- 120

Query: 121 YFWQIKNLKYAGLFLCTLYISLGLVCFPGGELYNVVRKEVWYRPDMFFYRDMLMMLAKNK 180
                                          LYNVVRKEVWYRPDMFFYRDMLMMLAKNK
Sbjct: 121 -------------------------------LYNVVRKEVWYRPDMFFYRDMLMMLAKNK 180

Query: 181 RVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNAMPSEAMDIYREMRESPDRPLSLPFR 240
           RVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDN M SEAMDIYREMRESPDRPLSLPFR
Sbjct: 181 RVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFR 240

Query: 241 VILKGLIPYPELREQIKDDFLELFPDMIVYDPPEDLFDEDEDRRKSEDD 290
           VILKGLIPYPELREQ+KDDFLELFPDMIVYDPPEDLF+EDEDR KSEDD
Sbjct: 241 VILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDRNKSEDD 256

[Close]

BLAST of CcUC03G053770 vs. NCBI nr
Match: XP_038878451.1 (pentatricopeptide repeat-containing protein At1g62350 [Benincasa hispida])

HSP 1 Score: 443.4 bits (1139), Expect = 1.6e-120
Identity = 233/280 (83.21%), Postives = 239/280 (85.36%), Query Frame = 0


Query: 1   MLRLAPNLLRRISNRATSTIHFHRFSLPTFLSHDLLQQQLLLRFIAGSASSPSLSIWRRK 60
           MLRL  NLLRRISN ATST  FHRFSLPTFL+HDL QQQLLLRFI GSASSPSLSIWRRK
Sbjct: 1   MLRLTLNLLRRISNSATSTTPFHRFSLPTFLNHDLFQQQLLLRFITGSASSPSLSIWRRK 60

Query: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKEY 120
           KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVL ELQRQNQVFLCMK  
Sbjct: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLFELQRQNQVFLCMK-- 120

Query: 121 YFWQIKNLKYAGLFLCTLYISLGLVCFPGGELYNVVRKEVWYRPDMFFYRDMLMMLAKNK 180
                                          LYNVVRKEVWYRPDMFFYRDMLMMLAKNK
Sbjct: 121 -------------------------------LYNVVRKEVWYRPDMFFYRDMLMMLAKNK 180

Query: 181 RVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNAMPSEAMDIYREMRESPDRPLSLPFR 240
           RVEETKQVW+DLKKEGVLFDQHTFGDIIRAYLDNAMPSEAMDIYREMRESPDRPLSLPFR
Sbjct: 181 RVEETKQVWQDLKKEGVLFDQHTFGDIIRAYLDNAMPSEAMDIYREMRESPDRPLSLPFR 240

Query: 241 VILKGLIPYPELREQIKDDFLELFPDMIVYDPPEDLFDED 281
           VILKGLIPYPELREQ+KDDFLELFPDMIVYDPPE+LF+E+
Sbjct: 241 VILKGLIPYPELREQVKDDFLELFPDMIVYDPPEELFEEE 247

[Close]

BLAST of CcUC03G053770 vs. NCBI nr
Match: XP_023531705.1 (pentatricopeptide repeat-containing protein At1g62350 [Cucurbita pepo subsp. pepo] >XP_023531706.1 pentatricopeptide repeat-containing protein At1g62350 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 436.4 bits (1121), Expect = 1.9e-118
Identity = 229/286 (80.07%), Postives = 238/286 (83.22%), Query Frame = 0


Query: 1   MLRLAPNLLRRISNRATSTIHFHRFSLPTFLSHDLLQQQLLLRFIAGSASSPSLSIWRRK 60
           MLR APNLLRR SNRATSTIH +RF+  TF  H   QQQLLLRFI GSASSPSLS+WRRK
Sbjct: 1   MLRFAPNLLRRFSNRATSTIHLYRFTHCTFFEHHRPQQQLLLRFITGSASSPSLSVWRRK 60

Query: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKEY 120
           KEMGKEGLIVVKELKR+QSN IRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMK  
Sbjct: 61  KEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMK-- 120

Query: 121 YFWQIKNLKYAGLFLCTLYISLGLVCFPGGELYNVVRKEVWYRPDMFFYRDMLMMLAKNK 180
                                          LYNVVRKEVWYRPDMFFYRDMLMMLAKNK
Sbjct: 121 -------------------------------LYNVVRKEVWYRPDMFFYRDMLMMLAKNK 180

Query: 181 RVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNAMPSEAMDIYREMRESPDRPLSLPFR 240
           RVEETKQVWEDLK EGVLFDQHTFGDI+RAYLDNAMPSEAMDIYREMR+SPDRPLSLPFR
Sbjct: 181 RVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLDNAMPSEAMDIYREMRQSPDRPLSLPFR 240

Query: 241 VILKGLIPYPELREQIKDDFLELFPDMIVYDPPEDLFDEDEDRRKS 287
           VILKGL+PYPELREQ+KDDFLELFPDMIVYDPPEDLF+EDED  KS
Sbjct: 241 VILKGLVPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDMCKS 253

[Close]

BLAST of CcUC03G053770 vs. NCBI nr
Match: XP_022966084.1 (pentatricopeptide repeat-containing protein At1g62350 [Cucurbita maxima] >XP_022966085.1 pentatricopeptide repeat-containing protein At1g62350 [Cucurbita maxima])

HSP 1 Score: 435.6 bits (1119), Expect = 3.2e-118
Identity = 230/286 (80.42%), Postives = 238/286 (83.22%), Query Frame = 0


Query: 1   MLRLAPNLLRRISNRATSTIHFHRFSLPTFLSHDLLQQQLLLRFIAGSASSPSLSIWRRK 60
           MLR APNLLRRISN ATSTIH +RF+  TF  H   QQQLLLRFI GSASSPSLSIWRRK
Sbjct: 1   MLRFAPNLLRRISNSATSTIHLYRFTHCTFFEHHRPQQQLLLRFITGSASSPSLSIWRRK 60

Query: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKEY 120
           KEMGKEGLIVVKELKRLQSN IRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMK  
Sbjct: 61  KEMGKEGLIVVKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMK-- 120

Query: 121 YFWQIKNLKYAGLFLCTLYISLGLVCFPGGELYNVVRKEVWYRPDMFFYRDMLMMLAKNK 180
                                          LYNVVRKEVWYRPDMFFYRDML MLAKNK
Sbjct: 121 -------------------------------LYNVVRKEVWYRPDMFFYRDMLTMLAKNK 180

Query: 181 RVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNAMPSEAMDIYREMRESPDRPLSLPFR 240
           RVEETKQVWEDLK EGVLFDQHTFGDI+RAYLDNAMPSEAMDIYREMR+SPDRPLSLPFR
Sbjct: 181 RVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLDNAMPSEAMDIYREMRQSPDRPLSLPFR 240

Query: 241 VILKGLIPYPELREQIKDDFLELFPDMIVYDPPEDLFDEDEDRRKS 287
           VILKGL+PYPELREQ++DDFLELFPDMIVYDPPEDLF+EDEDR KS
Sbjct: 241 VILKGLVPYPELREQVRDDFLELFPDMIVYDPPEDLFEEDEDRFKS 253

[Close]

BLAST of CcUC03G053770 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 1.5e-78
Identity = 148/227 (65.20%), Postives = 173/227 (76.21%), Query Frame = 0


Query: 63  MGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKEYYF 122
           M KEGLI  KELKRLQ+  +RLDRFI SHVSRLLKSDLV+VL E QRQNQVFLCMK    
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMK---- 60

Query: 123 WQIKNLKYAGLFLCTLYISLGLVCFPGGELYNVVRKEVWYRPDMFFYRDMLMMLAKNKRV 182
                                        LY VVR+E+WYRPDMFFYRDMLMMLA+NK+V
Sbjct: 61  -----------------------------LYEVVRREIWYRPDMFFYRDMLMMLARNKKV 120

Query: 183 EETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNAMPSEAMDIYREMRESPDRPLSLPFRVI 242
           +ETK+VWEDLKKE VLFDQHTFGD++R +LDN +P EAM +Y EMRESPDRPLSLPFRVI
Sbjct: 121 DETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNELPLEAMRLYGEMRESPDRPLSLPFRVI 180

Query: 243 LKGLIPYPELREQIKDDFLELFPDMIVYDPPEDLFDEDEDRRKSEDD 290
           LKGL+PYPELRE++KDDFLELFP MIVYDPPED+ ++ ++  +++ D
Sbjct: 181 LKGLVPYPELREKVKDDFLELFPGMIVYDPPEDICEDSDEEARTDSD 194

[Close]

BLAST of CcUC03G053770 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 3.1e-47
Identity = 96/235 (40.85%), Postives = 146/235 (62.13%), Query Frame = 0


Query: 43  RFIAGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVA 102
           RF  G    P   +WR KK +GKE L V+  LKRL+ +  +LD+FI +HV RLLK D++A
Sbjct: 56  RFHDGRPRGP---LWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLA 115

Query: 103 VLVELQRQNQVFLCMKEYYFWQIKNLKYAGLFLCTLYISLGLVCFPGGELYNVVRKEVWY 162
           V+ EL+RQ +  L +K                                 ++ V++K+ WY
Sbjct: 116 VIGELERQEETALAIK---------------------------------MFEVIQKQEWY 175

Query: 163 RPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNAMPSEAMD 222
           +PD+F Y+D+++ LAK+KR++E   +WE +KKE +  D  T+ ++IR +L +  P++AM+
Sbjct: 176 QPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEVIRGFLRDGCPADAMN 235

Query: 223 IYREMRESPDRPLSLPFRVILKGLIPYPELREQIKDDFLELFPDMIVYDPPEDLF 278
           +Y +M +SPD P  LPFRV+LKGL+P+P LR ++K DF ELFP+   YDPPE++F
Sbjct: 236 VYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFPEKHAYDPPEEIF 254

[Close]

BLAST of CcUC03G053770 vs. ExPASy Swiss-Prot
Match: Q9ZVX5 (Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana OX=3702 GN=At2g16880 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.5e-04
Identity = 28/112 (25.00%), Postives = 58/112 (51.79%), Query Frame = 0


Query: 164 PDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNAMPSEAMDI 223
           PD   Y  +L  ++K  R+ + K++  D+KK G++ ++ T+ +++  Y       EA  I
Sbjct: 238 PDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQI 297

Query: 224 YREMRESPDRPLSLPFRVILKGLIPYPELRE--QIKDDF--LELFPDMIVYD 272
              M+++   P    + +++ GL     +RE  ++ D    L+L PD++ Y+
Sbjct: 298 VELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYN 349

[Close]

BLAST of CcUC03G053770 vs. ExPASy Swiss-Prot
Match: Q9FKC3 (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 2.5e-04
Identity = 19/98 (19.39%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 151 ELYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRA 210
           +++ ++R+++WY+P++  Y  +++ML K K+ E+  ++++++  EG + +   +  ++ A
Sbjct: 135 QVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSA 194

Query: 211 YLDNAMPSEAMDIYREMRESPD-RPLSLPFRVILKGLI 248
           Y  +     A  +   M+ S + +P    + +++K  +
Sbjct: 195 YSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFL 232

[Close]

BLAST of CcUC03G053770 vs. ExPASy Swiss-Prot
Match: Q9SVH3 (Pentatricopeptide repeat-containing protein At4g20740 OS=Arabidopsis thaliana OX=3702 GN=At4g20740 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 4.2e-04
Identity = 28/117 (23.93%), Postives = 59/117 (50.43%), Query Frame = 0


Query: 158 KEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNAMP 217
           K+  ++P +F Y  ++  L KN   +    V+ED K++G++ +  TF  +++        
Sbjct: 220 KKFGFKPRVFLYNRIMDALVKNGYFDLALAVYEDFKEDGLVEESTTFMILVKGLCKAGRI 279

Query: 218 SEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQIK--DDFL--ELFPDMIVY 271
            E ++I + MRE+  +P    +  ++K L+    L   ++  D+    E+ PD++ Y
Sbjct: 280 EEMLEILQRMRENLCKPDVFAYTAMIKTLVSEGNLDASLRVWDEMRRDEIKPDVMAY 336

[Close]

BLAST of CcUC03G053770 vs. ExPASy TrEMBL
Match: A0A1S3BQ11 (pentatricopeptide repeat-containing protein At1g62350 OS=Cucumis melo OX=3656 GN=LOC103491974 PE=4 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 8.0e-123
Identity = 240/289 (83.04%), Postives = 246/289 (85.12%), Query Frame = 0


Query: 1   MLRLAPNLLRRISNRATSTIHFHRFSLPTFLSHDLLQQQLLLRFIAGSASSPSLSIWRRK 60
           MLRLAPNLLR+IS+   S+  FHRFSL TFL+ DLLQQQLLLRFIAGSASSPSLSIWRRK
Sbjct: 1   MLRLAPNLLRKISSSPVSSTPFHRFSLSTFLNLDLLQQQLLLRFIAGSASSPSLSIWRRK 60

Query: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKEY 120
           KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQN VFLCMK  
Sbjct: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMK-- 120

Query: 121 YFWQIKNLKYAGLFLCTLYISLGLVCFPGGELYNVVRKEVWYRPDMFFYRDMLMMLAKNK 180
                                          LYNVVRKEVWYRPDMFFYRDMLMMLAKNK
Sbjct: 121 -------------------------------LYNVVRKEVWYRPDMFFYRDMLMMLAKNK 180

Query: 181 RVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNAMPSEAMDIYREMRESPDRPLSLPFR 240
           RVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNAM SEAMDIYREMRESPDRPLSLPFR
Sbjct: 181 RVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNAMLSEAMDIYREMRESPDRPLSLPFR 240

Query: 241 VILKGLIPYPELREQIKDDFLELFPDMIVYDPPEDLFDEDEDRRKSEDD 290
           VILKGLIPYPELREQ+KDDFLELFPDMIVYDPPEDLF+EDEDR KSEDD
Sbjct: 241 VILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDRNKSEDD 256

[Close]

BLAST of CcUC03G053770 vs. ExPASy TrEMBL
Match: A0A6J1HQL7 (pentatricopeptide repeat-containing protein At1g62350 OS=Cucurbita maxima OX=3661 GN=LOC111465833 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.6e-118
Identity = 230/286 (80.42%), Postives = 238/286 (83.22%), Query Frame = 0


Query: 1   MLRLAPNLLRRISNRATSTIHFHRFSLPTFLSHDLLQQQLLLRFIAGSASSPSLSIWRRK 60
           MLR APNLLRRISN ATSTIH +RF+  TF  H   QQQLLLRFI GSASSPSLSIWRRK
Sbjct: 1   MLRFAPNLLRRISNSATSTIHLYRFTHCTFFEHHRPQQQLLLRFITGSASSPSLSIWRRK 60

Query: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKEY 120
           KEMGKEGLIVVKELKRLQSN IRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMK  
Sbjct: 61  KEMGKEGLIVVKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMK-- 120

Query: 121 YFWQIKNLKYAGLFLCTLYISLGLVCFPGGELYNVVRKEVWYRPDMFFYRDMLMMLAKNK 180
                                          LYNVVRKEVWYRPDMFFYRDML MLAKNK
Sbjct: 121 -------------------------------LYNVVRKEVWYRPDMFFYRDMLTMLAKNK 180

Query: 181 RVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNAMPSEAMDIYREMRESPDRPLSLPFR 240
           RVEETKQVWEDLK EGVLFDQHTFGDI+RAYLDNAMPSEAMDIYREMR+SPDRPLSLPFR
Sbjct: 181 RVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLDNAMPSEAMDIYREMRQSPDRPLSLPFR 240

Query: 241 VILKGLIPYPELREQIKDDFLELFPDMIVYDPPEDLFDEDEDRRKS 287
           VILKGL+PYPELREQ++DDFLELFPDMIVYDPPEDLF+EDEDR KS
Sbjct: 241 VILKGLVPYPELREQVRDDFLELFPDMIVYDPPEDLFEEDEDRFKS 253

[Close]

BLAST of CcUC03G053770 vs. ExPASy TrEMBL
Match: A0A6J1EQI1 (pentatricopeptide repeat-containing protein At1g62350 OS=Cucurbita moschata OX=3662 GN=LOC111436516 PE=4 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 1.5e-116
Identity = 227/286 (79.37%), Postives = 235/286 (82.17%), Query Frame = 0


Query: 1   MLRLAPNLLRRISNRATSTIHFHRFSLPTFLSHDLLQQQLLLRFIAGSASSPSLSIWRRK 60
           MLR APNLLRR SN ATSTIH +R +  TF  H   QQQLLLRFI GSASSPSLSIWRRK
Sbjct: 1   MLRFAPNLLRRFSNSATSTIHVYRLTHCTFFEHHRPQQQLLLRFITGSASSPSLSIWRRK 60

Query: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKEY 120
           KEMGKEGLIVVKELKR+QSN IRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMK  
Sbjct: 61  KEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMK-- 120

Query: 121 YFWQIKNLKYAGLFLCTLYISLGLVCFPGGELYNVVRKEVWYRPDMFFYRDMLMMLAKNK 180
                                          LYNVVRKEVWYRPDMFFYRDMLMMLAKNK
Sbjct: 121 -------------------------------LYNVVRKEVWYRPDMFFYRDMLMMLAKNK 180

Query: 181 RVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNAMPSEAMDIYREMRESPDRPLSLPFR 240
           RVEETKQVWEDLK EGVLFDQHTFGDI+RAYLDNAMPSEAMDIYREMR+SPDRPLSLPFR
Sbjct: 181 RVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLDNAMPSEAMDIYREMRQSPDRPLSLPFR 240

Query: 241 VILKGLIPYPELREQIKDDFLELFPDMIVYDPPEDLFDEDEDRRKS 287
           VILKGL+PYPELREQ+KDDFLELFPDMIVYDPPEDLF+EDE   KS
Sbjct: 241 VILKGLVPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEGMCKS 253

[Close]

BLAST of CcUC03G053770 vs. ExPASy TrEMBL
Match: A0A6J1DGX4 (pentatricopeptide repeat-containing protein At1g62350 OS=Momordica charantia OX=3673 GN=LOC111020768 PE=4 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 7.5e-113
Identity = 224/290 (77.24%), Postives = 233/290 (80.34%), Query Frame = 0


Query: 1   MLRLAPNLLRRISNRA--TSTIHFHRFSLPTFLSHDLLQQQLLLRFIAGSASSPSLSIWR 60
           MLRL PNLLRR  NR   T+TI FH  S  TF   D LQQQ L RFI GSASSPSLSIWR
Sbjct: 1   MLRLVPNLLRRAPNRVTRTATIPFHLSSPITFFDRDQLQQQSLFRFITGSASSPSLSIWR 60

Query: 61  RKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMK 120
           RKKEMGKEGLIVVKELKRLQSN IRLDRFISSHVSRLLKSDLVAVLVELQRQ QVFLCMK
Sbjct: 61  RKKEMGKEGLIVVKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQKQVFLCMK 120

Query: 121 EYYFWQIKNLKYAGLFLCTLYISLGLVCFPGGELYNVVRKEVWYRPDMFFYRDMLMMLAK 180
                                            LYNVVRKEVWYRPDMFFYRDMLMML+K
Sbjct: 121 ---------------------------------LYNVVRKEVWYRPDMFFYRDMLMMLSK 180

Query: 181 NKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNAMPSEAMDIYREMRESPDRPLSLP 240
           NK+VEETKQVW+DLK+E VLFDQHTFGDIIRAYLDN MPSEAMDIYREMR+SPDRPLSLP
Sbjct: 181 NKKVEETKQVWQDLKREEVLFDQHTFGDIIRAYLDNGMPSEAMDIYREMRQSPDRPLSLP 240

Query: 241 FRVILKGLIPYPELREQIKDDFLELFPDMIVYDPPEDLFDEDEDRRKSED 289
           FRVILKGLIPYPELREQIKDDFLELFPDMIVYDPPEDLF+EDEDR++  D
Sbjct: 241 FRVILKGLIPYPELREQIKDDFLELFPDMIVYDPPEDLFEEDEDRKREYD 257

[Close]

BLAST of CcUC03G053770 vs. ExPASy TrEMBL
Match: A0A2I4F1J6 (pentatricopeptide repeat-containing protein At1g62350 OS=Juglans regia OX=51240 GN=LOC108994666 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.5e-92
Identity = 191/295 (64.75%), Postives = 219/295 (74.24%), Query Frame = 0


Query: 1   MLRLAPNLLRRISNRATSTIHFHRFSLPTF--LSHDLL----QQQLLLRFIAGSASSPSL 60
           MLR A NL R+ S   T+ +    FS P F  L  D      QQ+  LR++AGSASSPSL
Sbjct: 1   MLRQAQNLFRKTSFSTTTRLPSSPFS-PNFPLLLQDTFSKNHQQKWFLRYVAGSASSPSL 60

Query: 61  SIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVF 120
           SIWRR+KEMGKEGLIV KELKRL+ N +RLDRFI SHVSRLLKSDL+AVL E QRQ+Q+ 
Sbjct: 61  SIWRRRKEMGKEGLIVAKELKRLRFNQLRLDRFIRSHVSRLLKSDLLAVLAEFQRQDQIL 120

Query: 121 LCMKEYYFWQIKNLKYAGLFLCTLYISLGLVCFPGGELYNVVRKEVWYRPDMFFYRDMLM 180
           LCMK                                 LY+VVRKE+WYRPDM+FYRDMLM
Sbjct: 121 LCMK---------------------------------LYDVVRKEIWYRPDMYFYRDMLM 180

Query: 181 MLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNAMPSEAMDIYREMRESPDRP 240
           MLA+NK+V+E KQVWEDLKKE VLFDQHTFGDIIRA+LDN +PSEAMDIY EMR SPD P
Sbjct: 181 MLARNKKVDEAKQVWEDLKKEEVLFDQHTFGDIIRAFLDNELPSEAMDIYDEMRLSPDPP 240

Query: 241 LSLPFRVILKGLIPYPELREQIKDDFLELFPDMIVYDPPEDLFDEDEDRRKSEDD 290
           +SLPFRVILKGL+PYPELRE+IKDDFLELFPDM+VYDPPEDLF+ ++ R+K  DD
Sbjct: 241 ISLPFRVILKGLLPYPELREKIKDDFLELFPDMVVYDPPEDLFEHEDWRKKIGDD 261

[Close]

BLAST of CcUC03G053770 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 294.3 bits (752), Expect = 1.1e-79
Identity = 148/227 (65.20%), Postives = 173/227 (76.21%), Query Frame = 0


Query: 63  MGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKEYYF 122
           M KEGLI  KELKRLQ+  +RLDRFI SHVSRLLKSDLV+VL E QRQNQVFLCMK    
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMK---- 60

Query: 123 WQIKNLKYAGLFLCTLYISLGLVCFPGGELYNVVRKEVWYRPDMFFYRDMLMMLAKNKRV 182
                                        LY VVR+E+WYRPDMFFYRDMLMMLA+NK+V
Sbjct: 61  -----------------------------LYEVVRREIWYRPDMFFYRDMLMMLARNKKV 120

Query: 183 EETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNAMPSEAMDIYREMRESPDRPLSLPFRVI 242
           +ETK+VWEDLKKE VLFDQHTFGD++R +LDN +P EAM +Y EMRESPDRPLSLPFRVI
Sbjct: 121 DETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNELPLEAMRLYGEMRESPDRPLSLPFRVI 180

Query: 243 LKGLIPYPELREQIKDDFLELFPDMIVYDPPEDLFDEDEDRRKSEDD 290
           LKGL+PYPELRE++KDDFLELFP MIVYDPPED+ ++ ++  +++ D
Sbjct: 181 LKGLVPYPELREKVKDDFLELFPGMIVYDPPEDICEDSDEEARTDSD 194

[Close]

BLAST of CcUC03G053770 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 190.3 bits (482), Expect = 2.2e-48
Identity = 96/235 (40.85%), Postives = 146/235 (62.13%), Query Frame = 0


Query: 43  RFIAGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVA 102
           RF  G    P   +WR KK +GKE L V+  LKRL+ +  +LD+FI +HV RLLK D++A
Sbjct: 56  RFHDGRPRGP---LWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLA 115

Query: 103 VLVELQRQNQVFLCMKEYYFWQIKNLKYAGLFLCTLYISLGLVCFPGGELYNVVRKEVWY 162
           V+ EL+RQ +  L +K                                 ++ V++K+ WY
Sbjct: 116 VIGELERQEETALAIK---------------------------------MFEVIQKQEWY 175

Query: 163 RPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNAMPSEAMD 222
           +PD+F Y+D+++ LAK+KR++E   +WE +KKE +  D  T+ ++IR +L +  P++AM+
Sbjct: 176 QPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEVIRGFLRDGCPADAMN 235

Query: 223 IYREMRESPDRPLSLPFRVILKGLIPYPELREQIKDDFLELFPDMIVYDPPEDLF 278
           +Y +M +SPD P  LPFRV+LKGL+P+P LR ++K DF ELFP+   YDPPE++F
Sbjct: 236 VYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFPEKHAYDPPEEIF 254

[Close]

BLAST of CcUC03G053770 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 68.6 bits (166), Expect = 9.7e-12
Identity = 56/202 (27.72%), Postives = 90/202 (44.55%), Query Frame = 0


Query: 84  LDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKEYYFWQIKNLKYAGLFLCTLYISLG 143
           LDR I S   RLLK D+VAVL EL RQN+  L +K                         
Sbjct: 541 LDRVIISKFRRLLKFDMVAVLRELLRQNECSLALK------------------------- 600

Query: 144 LVCFPGGELYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKE-GVLFDQH 203
                   ++  +RKE WY+P +  Y DM+ ++A N  +EE   ++  +K E G++ +  
Sbjct: 601 --------VFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVNYLYSAMKSEKGLMAEIE 660

Query: 204 TFGDIIRAYLDNAMPSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPE--LREQIKDDF 263
            F  ++   L++ +    MD Y  M+     P    FRV++ GL    E  L   ++ D 
Sbjct: 661 WFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDRASFRVLVLGLESNGEMGLSAIVRQDA 703

Query: 264 LELFPDMIVYDPPEDLFDEDED 283
            E + + +      +  +EDE+
Sbjct: 721 HEYYGESL------EFIEEDEE 703

[Close]

BLAST of CcUC03G053770 vs. TAIR 10
Match: AT3G42570.1 (peroxidase family protein )

HSP 1 Score: 52.0 bits (123), Expect = 9.4e-07
Identity = 25/34 (73.53%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 60 KKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVS 94
          KKE  KEGLI  KELKRLQ+N +RLDRFI SH S
Sbjct: 4  KKEKSKEGLIAAKELKRLQTNLVRLDRFIDSHPS 37

[Close]

BLAST of CcUC03G053770 vs. TAIR 10
Match: AT2G16880.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.8e-05
Identity = 28/112 (25.00%), Postives = 58/112 (51.79%), Query Frame = 0


Query: 164 PDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNAMPSEAMDI 223
           PD   Y  +L  ++K  R+ + K++  D+KK G++ ++ T+ +++  Y       EA  I
Sbjct: 238 PDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQI 297

Query: 224 YREMRESPDRPLSLPFRVILKGLIPYPELRE--QIKDDF--LELFPDMIVYD 272
              M+++   P    + +++ GL     +RE  ++ D    L+L PD++ Y+
Sbjct: 298 VELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYN 349

The following BLAST results are available for this feature:

BLAST of CcUC03G053770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450338.1	1.7e-122	83.04	PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Cucumis melo]	[more]
XP_004139064.1	1.8e-121	82.35	pentatricopeptide repeat-containing protein At1g62350 isoform X1 [Cucumis sativu...	[more]
XP_038878451.1	1.6e-120	83.21	pentatricopeptide repeat-containing protein At1g62350 [Benincasa hispida]	[more]
XP_023531705.1	1.9e-118	80.07	pentatricopeptide repeat-containing protein At1g62350 [Cucurbita pepo subsp. pep...	[more]
XP_022966084.1	3.2e-118	80.42	pentatricopeptide repeat-containing protein At1g62350 [Cucurbita maxima] >XP_022...	[more]

BLAST of CcUC03G053770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1PFH7	1.5e-78	65.20	Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX...	[more]
Q9STF9	3.1e-47	40.85	Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q9ZVX5	2.5e-04	25.00	Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana OX...	[more]
Q9FKC3	2.5e-04	19.39	Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop...	[more]
Q9SVH3	4.2e-04	23.93	Pentatricopeptide repeat-containing protein At4g20740 OS=Arabidopsis thaliana OX...	[more]

BLAST of CcUC03G053770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BQ11	8.0e-123	83.04	pentatricopeptide repeat-containing protein At1g62350 OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1HQL7	1.6e-118	80.42	pentatricopeptide repeat-containing protein At1g62350 OS=Cucurbita maxima OX=366...	[more]
A0A6J1EQI1	1.5e-116	79.37	pentatricopeptide repeat-containing protein At1g62350 OS=Cucurbita moschata OX=3...	[more]
A0A6J1DGX4	7.5e-113	77.24	pentatricopeptide repeat-containing protein At1g62350 OS=Momordica charantia OX=...	[more]
A0A2I4F1J6	1.5e-92	64.75	pentatricopeptide repeat-containing protein At1g62350 OS=Juglans regia OX=51240 ...	[more]

BLAST of CcUC03G053770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G62350.1	1.1e-79	65.20	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G46870.1	2.2e-48	40.85	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G09320.1	9.7e-12	27.72	Vacuolar sorting protein 9 (VPS9) domain	[more]
AT3G42570.1	9.4e-07	73.53	peroxidase family protein	[more]
AT2G16880.1	1.8e-05	25.00	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 203..230 e-value: 0.0022 score: 16.1
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 203..230 e-value: 0.0087 score: 16.2 coord: 169..197 e-value: 0.22 score: 11.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 165..199 score: 8.769097
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 200..234 score: 9.920034
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 62..280 e-value: 1.7E-35 score: 124.0
IPR044795	Pentatricopeptide repeat-containing protein THA8L-like	PANTHER	PTHR46870	PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC	coord: 151..286 coord: 2..121
None	No IPR available	PANTHER	PTHR46870:SF1	BNAC09G13590D PROTEIN	coord: 2..121
None	No IPR available	PANTHER	PTHR46870:SF1	BNAC09G13590D PROTEIN	coord: 151..286

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC03G053770.1	CcUC03G053770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding